Wall clock time and date at job start Tue Mar 31 2020 14:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48494 * 109.47115 * 269.99662 * 3 2 1 5 5 H 1.48501 * 109.47246 * 29.99676 * 3 2 1 6 6 H 1.48504 * 109.47105 * 149.99653 * 3 2 1 7 7 C 1.38804 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99676 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00359 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00433 * 180.27342 * 9 7 2 11 11 H 1.08996 * 112.85076 * 335.92607 * 10 9 7 12 12 C 1.53790 * 113.61400 * 107.22586 * 10 9 7 13 13 C 1.53787 * 87.07786 * 139.98341 * 12 10 9 14 14 H 1.08999 * 113.68998 * 89.13074 * 13 12 10 15 15 C 1.52996 * 113.61108 * 220.01707 * 13 12 10 16 16 N 1.46502 * 109.47560 * 272.50047 * 15 13 12 17 17 C 1.34772 * 120.00205 * 180.02562 * 16 15 13 18 18 O 1.21537 * 120.00099 * 359.97438 * 17 16 15 19 19 C 1.48002 * 120.00198 * 180.02562 * 17 16 15 20 20 C 1.38890 * 121.16760 * 354.23852 * 19 17 16 21 21 C 1.39356 * 119.67220 * 179.69302 * 20 19 17 22 22 N 1.31097 * 121.89758 * 0.62325 * 21 20 19 23 23 C 1.33278 * 121.62025 * 359.68130 * 22 21 20 24 24 C 1.40846 * 121.91501 * 180.02562 * 23 22 21 25 25 C 1.36169 * 118.76724 * 179.97438 * 24 23 22 26 26 N 1.32531 * 121.96032 * 359.97438 * 25 24 23 27 27 C 1.31333 * 122.60891 * 359.97438 * 26 25 24 28 28 C 1.40089 * 119.87420 * 0.04145 * 27 26 25 29 29 C 1.53774 * 113.61980 * 204.72441 * 10 9 7 30 30 H 0.96999 * 120.00553 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99795 * 0.02562 * 9 7 2 32 32 H 1.08992 * 113.61875 * 254.53222 * 12 10 9 33 33 H 1.08998 * 113.61215 * 25.43717 * 12 10 9 34 34 H 1.09000 * 109.47333 * 32.50625 * 15 13 12 35 35 H 1.09004 * 109.46763 * 152.50055 * 15 13 12 36 36 H 0.96998 * 119.99654 * 0.02562 * 16 15 13 37 37 H 1.08001 * 120.16638 * 359.97438 * 20 19 17 38 38 H 1.08002 * 119.04743 * 180.28278 * 21 20 19 39 39 H 1.07994 * 120.61567 * 359.94697 * 24 23 22 40 40 H 1.07998 * 119.01546 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.06812 * 179.97438 * 27 26 25 42 42 H 1.09005 * 113.61839 * 334.57028 * 29 10 9 43 43 H 1.09004 * 113.61607 * 105.38637 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3795 -1.2020 0.0011 10 6 4.1121 -2.4707 -0.0044 11 1 3.5295 -3.2977 0.4013 12 6 4.7821 -2.7893 -1.3515 13 6 5.9826 -3.3079 -0.5423 14 1 5.9132 -4.3646 -0.2841 15 6 7.3371 -2.9316 -1.1461 16 7 7.7360 -3.9484 -2.1225 17 6 8.9033 -3.8254 -2.7848 18 8 9.6249 -2.8708 -2.5724 19 6 9.3060 -4.8523 -3.7716 20 6 8.5601 -6.0104 -3.9490 21 6 8.9644 -6.9538 -4.8916 22 7 10.0439 -6.7895 -5.6171 23 6 10.8097 -5.7056 -5.4949 24 6 11.9704 -5.5225 -6.2714 25 6 12.7055 -4.3900 -6.0943 26 7 12.3601 -3.4597 -5.2158 27 6 11.2916 -3.5626 -4.4592 28 6 10.4679 -4.6908 -4.5647 29 6 5.5283 -2.3669 0.5859 30 1 -0.4851 0.8400 -0.0004 31 1 3.8645 -0.3620 0.0014 32 1 4.2710 -3.5658 -1.9206 33 1 5.0066 -1.9048 -1.9476 34 1 7.2580 -1.9637 -1.6411 35 1 8.0845 -2.8749 -0.3547 36 1 7.1599 -4.7100 -2.2924 37 1 7.6686 -6.1769 -3.3625 38 1 8.3743 -7.8486 -5.0245 39 1 12.2720 -6.2666 -6.9936 40 1 13.5965 -4.2457 -6.6873 41 1 11.0489 -2.7795 -3.7562 42 1 5.9569 -1.3669 0.5196 43 1 5.6192 -2.8011 1.5816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086159274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:57 Heat of formation + Delta-G solvation = 47.578814 kcal Electronic energy + Delta-G solvation = -25863.523278 eV Core-core repulsion = 22101.930387 eV Total energy + Delta-G solvation = -3761.592891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.49561 -40.84474 -39.83531 -39.07741 -36.26316 -35.20596 -34.64163 -32.77759 -32.65382 -31.59077 -29.04690 -26.55132 -26.43654 -25.53429 -25.25358 -24.29071 -22.39401 -22.09991 -20.81193 -19.67722 -19.34918 -19.10307 -18.43694 -17.32922 -17.13907 -16.72585 -16.63688 -16.12908 -16.08328 -15.78435 -15.65464 -15.50501 -15.22024 -14.73262 -14.56703 -14.36659 -14.16637 -13.92687 -13.89490 -13.22734 -13.19855 -13.08619 -13.00609 -12.68609 -12.14932 -11.92982 -11.77785 -11.74955 -11.60404 -11.43059 -11.11665 -10.90214 -10.84291 -10.48377 -10.39366 -10.22879 -9.61613 -9.25013 -8.02104 -5.33985 -1.18774 -0.43529 0.38846 1.37889 1.40121 1.47439 1.63507 1.84839 2.04104 2.48231 2.95232 3.06979 3.26274 3.29363 3.37238 3.44448 3.56395 3.60983 3.62724 3.72688 3.85940 4.10851 4.17013 4.24308 4.28402 4.34531 4.40429 4.53288 4.57433 4.66281 4.74729 4.80579 4.83289 4.98579 5.00010 5.06197 5.21620 5.28551 5.30951 5.40882 5.55399 5.67981 5.79631 6.24123 6.33964 6.61120 6.82610 7.00632 7.09360 7.88442 8.04955 9.19358 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022130 B = 0.002145 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.924566 B =13050.590296 C =13531.184454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.068 4.068 3 Si 0.952 3.048 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.251 1.251 7 C -0.228 4.228 8 H 0.061 0.939 9 N -0.745 5.745 10 C 0.143 3.857 11 H 0.079 0.921 12 C -0.156 4.156 13 C -0.096 4.096 14 H 0.126 0.874 15 C 0.135 3.865 16 N -0.695 5.695 17 C 0.556 3.444 18 O -0.561 6.561 19 C -0.066 4.066 20 C -0.118 4.118 21 C 0.154 3.846 22 N -0.479 5.479 23 C 0.133 3.867 24 C -0.145 4.145 25 C 0.083 3.917 26 N -0.510 5.510 27 C 0.138 3.862 28 C -0.150 4.150 29 C -0.137 4.137 30 H 0.256 0.744 31 H 0.364 0.636 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.419 0.581 37 H 0.190 0.810 38 H 0.216 0.784 39 H 0.170 0.830 40 H 0.190 0.810 41 H 0.184 0.816 42 H 0.075 0.925 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.203 -18.010 -9.645 31.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.259 4.259 3 Si 0.779 3.221 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.176 1.176 7 C -0.359 4.359 8 H 0.079 0.921 9 N -0.386 5.386 10 C 0.035 3.965 11 H 0.097 0.903 12 C -0.196 4.196 13 C -0.115 4.115 14 H 0.144 0.856 15 C 0.012 3.988 16 N -0.346 5.346 17 C 0.343 3.657 18 O -0.441 6.441 19 C -0.079 4.079 20 C -0.138 4.138 21 C -0.020 4.020 22 N -0.188 5.188 23 C 0.007 3.993 24 C -0.165 4.165 25 C -0.061 4.061 26 N -0.219 5.219 27 C -0.032 4.032 28 C -0.154 4.154 29 C -0.176 4.176 30 H 0.065 0.935 31 H 0.198 0.802 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.257 0.743 37 H 0.207 0.793 38 H 0.232 0.768 39 H 0.188 0.812 40 H 0.206 0.794 41 H 0.200 0.800 42 H 0.094 0.906 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 25.438 -17.289 -10.127 32.381 hybrid contribution -1.109 1.048 0.402 1.579 sum 24.328 -16.240 -9.725 30.825 Atomic orbital electron populations 1.69873 1.07070 1.26529 1.60044 1.25499 0.96103 1.01181 1.03115 0.85456 0.78725 0.79988 0.77890 1.20849 1.22499 1.17583 1.19129 0.82899 0.93407 1.40508 0.92120 1.42817 1.02410 1.04162 1.89221 1.21968 0.90901 0.87900 0.95768 0.90310 1.23761 0.96998 1.00565 0.98322 1.22485 0.91430 1.01154 0.96388 0.85650 1.21400 0.95886 0.90707 0.90852 1.45752 1.20223 1.27631 1.41023 1.18244 0.81801 0.84983 0.80721 1.90623 1.53316 1.33804 1.66400 1.20311 0.95149 0.96213 0.96266 1.23022 1.00525 0.91831 0.98424 1.23962 0.90948 0.99100 0.87956 1.67938 1.06029 1.20367 1.24466 1.19188 0.95803 0.90023 0.94259 1.22032 0.93563 1.00280 1.00666 1.22893 0.99931 0.88891 0.94418 1.67693 1.17035 1.30951 1.06180 1.24278 0.88132 0.96029 0.94792 1.19766 0.97822 0.98271 0.99587 1.23363 0.95714 0.99819 0.98747 0.93482 0.80250 0.91236 0.91763 0.92440 0.90660 0.74270 0.79279 0.76789 0.81246 0.79363 0.79958 0.90625 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.53 13.97 21.65 0.30 -62.22 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 3 Si 0.95 45.19 27.74 68.60 1.90 47.09 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.25 -10.72 6.52 99.48 0.65 -10.07 16 7 C -0.23 -12.59 10.45 84.03 0.88 -11.71 16 8 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 9 N -0.75 -32.85 5.20 -320.46 -1.67 -34.52 16 10 C 0.14 4.67 4.48 45.52 0.20 4.87 16 11 H 0.08 2.64 8.10 -2.39 -0.02 2.62 16 12 C -0.16 -3.99 7.43 31.13 0.23 -3.76 16 13 C -0.10 -1.68 3.75 -10.27 -0.04 -1.72 16 14 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 15 C 0.13 2.40 5.51 86.38 0.48 2.88 16 16 N -0.69 -9.90 5.51 -465.82 -2.57 -12.46 16 17 C 0.56 10.96 7.76 86.83 0.67 11.64 16 18 O -0.56 -15.29 13.61 -3.83 -0.05 -15.35 16 19 C -0.07 -1.12 5.93 -19.70 -0.12 -1.24 16 20 C -0.12 -1.00 9.60 22.70 0.22 -0.78 16 21 C 0.15 1.37 11.14 85.07 0.95 2.32 16 22 N -0.48 -7.75 10.33 -188.54 -1.95 -9.70 16 23 C 0.13 2.60 6.63 40.45 0.27 2.87 16 24 C -0.15 -2.40 10.08 22.43 0.23 -2.17 16 25 C 0.08 1.45 11.06 84.11 0.93 2.38 16 26 N -0.51 -12.19 10.31 -195.81 -2.02 -14.21 16 27 C 0.14 3.43 10.52 85.22 0.90 4.33 16 28 C -0.15 -3.22 5.77 -21.11 -0.12 -3.34 16 29 C -0.14 -3.27 7.39 31.12 0.23 -3.04 16 30 H 0.26 15.59 8.31 -92.71 -0.77 14.81 16 31 H 0.36 15.66 5.78 -92.71 -0.54 15.12 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.86 7.90 -2.39 -0.02 1.84 16 34 H 0.06 1.27 7.84 -2.39 -0.02 1.26 16 35 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.42 3.01 6.65 -92.71 -0.62 2.39 16 37 H 0.19 -0.05 6.56 -2.91 -0.02 -0.07 16 38 H 0.22 -0.02 8.06 -2.91 -0.02 -0.04 16 39 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 41 H 0.18 4.98 5.08 -2.91 -0.01 4.96 16 42 H 0.08 1.90 8.08 -2.38 -0.02 1.88 16 43 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -79.49 359.51 0.18 -79.32 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.14 Total: 22.01 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 6.37 Total: 0.04 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -7.90 Total: -133.11 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.05 Total: -15.35 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Total: -79.49 0.18 -79.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086159274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.896 kcal (2) G-P(sol) polarization free energy of solvation -79.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds