Wall clock time and date at job start Tue Mar 31 2020 15:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00203 * 2 1 4 4 H 1.48499 * 109.46950 * 269.99811 * 3 2 1 5 5 H 1.48502 * 109.46988 * 29.99806 * 3 2 1 6 6 H 1.48499 * 109.47294 * 149.99469 * 3 2 1 7 7 C 1.38819 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00665 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99574 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00022 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.90687 * 23.74627 * 10 9 7 12 12 C 1.53775 * 113.61484 * 155.00145 * 10 9 7 13 13 C 1.53781 * 87.08397 * 89.11575 * 12 10 9 14 14 H 1.09003 * 113.61749 * 270.80259 * 13 12 10 15 15 C 1.53004 * 113.61835 * 139.97837 * 13 12 10 16 16 N 1.46496 * 109.47237 * 176.53127 * 15 13 12 17 17 C 1.34780 * 119.99707 * 180.02562 * 16 15 13 18 18 O 1.21501 * 120.00146 * 0.02562 * 17 16 15 19 19 C 1.48233 * 119.99829 * 180.02562 * 17 16 15 20 20 C 1.40570 * 119.75000 * 180.02562 * 19 17 16 21 21 N 1.31259 * 120.57186 * 180.02562 * 20 19 17 22 22 C 1.33783 * 119.80621 * 359.95311 * 21 20 19 23 23 C 1.40546 * 120.99711 * 180.02562 * 22 21 20 24 24 C 1.36075 * 119.74928 * 179.97438 * 23 22 21 25 25 C 1.39485 * 121.01849 * 0.02562 * 24 23 22 26 26 C 1.35984 * 120.97847 * 359.97438 * 25 24 23 27 27 C 1.40820 * 119.70179 * 0.02562 * 26 25 24 28 28 N 1.32165 * 119.74687 * 359.97438 * 19 17 16 29 29 C 1.53787 * 87.17248 * 25.38912 * 13 12 10 30 30 H 0.96992 * 119.99902 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99835 * 0.02562 * 9 7 2 32 32 H 1.08999 * 113.61829 * 334.57075 * 12 10 9 33 33 H 1.09006 * 113.61453 * 203.66475 * 12 10 9 34 34 H 1.09003 * 109.46449 * 56.52718 * 15 13 12 35 35 H 1.08997 * 109.46939 * 296.53843 * 15 13 12 36 36 H 0.97004 * 119.99997 * 359.97438 * 16 15 13 37 37 H 1.08000 * 119.71137 * 359.97438 * 20 19 17 38 38 H 1.07997 * 120.12713 * 0.02562 * 23 22 21 39 39 H 1.08000 * 119.49294 * 180.28109 * 24 23 22 40 40 H 1.08004 * 119.50815 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.14915 * 180.02562 * 26 25 24 42 42 H 1.09003 * 113.61073 * 89.15832 * 29 13 12 43 43 H 1.08993 * 113.61576 * 220.06133 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0661 -3.5647 0.4048 12 6 1.2602 -4.8288 0.5960 13 6 0.7204 -5.0791 -0.8221 14 1 -0.1911 -4.5251 -1.0465 15 6 0.6196 -6.5616 -1.1868 16 7 0.0211 -6.6977 -2.5169 17 6 -0.1677 -7.9216 -3.0489 18 8 0.1581 -8.9121 -2.4251 19 6 -0.7727 -8.0594 -4.3951 20 6 -0.9677 -9.3384 -4.9447 21 7 -1.5016 -9.4791 -6.1355 22 6 -1.8649 -8.3970 -6.8334 23 6 -2.4393 -8.5186 -8.1104 24 6 -2.7998 -7.4010 -8.7977 25 6 -2.6082 -6.1303 -8.2552 26 6 -2.0557 -5.9715 -7.0229 27 6 -1.6693 -7.1039 -6.2802 28 7 -1.1257 -6.9787 -5.0691 29 6 1.9978 -4.4015 -1.3456 30 1 -0.4849 0.8400 -0.0004 31 1 0.3556 -2.3880 -0.0002 32 1 0.4938 -4.5190 1.3064 33 1 1.8870 -5.6367 0.9735 34 1 -0.0032 -7.0744 -0.4538 35 1 1.6159 -7.0037 -1.1896 36 1 -0.2400 -5.9070 -3.0145 37 1 -0.6749 -10.2129 -4.3825 38 1 -2.5946 -9.4954 -8.5441 39 1 -3.2451 -7.4994 -9.7768 40 1 -2.9030 -5.2597 -8.8223 41 1 -1.9138 -4.9814 -6.6155 42 1 2.8267 -5.0924 -1.4999 43 1 1.8261 -3.7472 -2.2003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086387118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:59 Heat of formation + Delta-G solvation = 66.067672 kcal Electronic energy + Delta-G solvation = -25781.742384 eV Core-core repulsion = 22020.951230 eV Total energy + Delta-G solvation = -3760.791154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.89845 -39.82831 -38.56959 -37.64905 -35.41257 -34.66436 -33.21068 -31.47000 -31.04817 -30.14876 -27.69954 -26.00684 -25.07583 -24.81021 -23.67373 -22.67571 -21.88773 -21.21481 -19.20816 -18.77089 -18.35741 -17.82224 -17.22431 -16.17055 -16.04597 -15.93795 -15.34189 -15.10675 -14.84708 -14.78488 -14.43380 -14.13991 -14.08404 -13.63560 -13.33005 -12.90123 -12.40260 -12.38175 -12.27429 -12.21967 -12.12693 -12.08784 -11.93107 -11.42339 -11.06239 -10.86112 -10.64624 -10.49226 -10.18662 -9.94905 -9.70566 -9.60168 -9.45606 -9.41641 -9.10135 -9.01457 -8.89608 -7.01486 -5.82129 -3.11121 -0.39923 0.00010 1.41251 2.05986 2.82922 2.85327 3.40701 3.46177 3.47709 3.49617 3.63534 3.65629 3.82070 4.31940 4.39717 4.54454 4.57525 4.67324 4.78386 4.94870 5.03635 5.05184 5.21864 5.37705 5.41675 5.43935 5.59894 5.61555 5.66912 5.71641 5.82830 5.87229 5.92375 6.07772 6.18271 6.19761 6.30915 6.36346 6.56983 6.71274 6.74166 6.87691 7.03310 7.15479 7.42061 7.67776 7.97151 8.37080 9.47770 10.05356 10.39495 11.40320 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.002456 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.953428 B =11397.261760 C =13212.039925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.147 4.147 13 C -0.120 4.120 14 H 0.094 0.906 15 C 0.128 3.872 16 N -0.698 5.698 17 C 0.571 3.429 18 O -0.531 6.531 19 C 0.061 3.939 20 C 0.128 3.872 21 N -0.426 5.426 22 C 0.093 3.907 23 C -0.091 4.091 24 C -0.087 4.087 25 C -0.103 4.103 26 C -0.072 4.072 27 C 0.077 3.923 28 N -0.390 5.390 29 C -0.169 4.169 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.413 0.587 37 H 0.188 0.812 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.068 0.932 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 -17.713 -16.051 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.187 4.187 13 C -0.139 4.139 14 H 0.112 0.888 15 C 0.005 3.995 16 N -0.348 5.348 17 C 0.353 3.647 18 O -0.407 6.407 19 C -0.096 4.096 20 C -0.048 4.048 21 N -0.140 5.140 22 C -0.032 4.032 23 C -0.110 4.110 24 C -0.107 4.107 25 C -0.123 4.123 26 C -0.092 4.092 27 C -0.050 4.050 28 N -0.108 5.108 29 C -0.210 4.210 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.249 0.751 37 H 0.205 0.795 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.164 0.836 42 H 0.086 0.914 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.265 -18.149 -15.687 24.560 hybrid contribution -0.072 1.296 -0.336 1.341 sum -5.337 -16.853 -16.023 23.859 Atomic orbital electron populations 1.69656 1.05135 1.25786 1.57479 1.24764 0.95539 0.97787 1.02798 0.86173 0.78683 0.83701 0.77530 1.21690 1.21755 1.20689 1.19291 0.91120 0.83970 1.42930 0.90991 1.42174 1.05690 0.99442 1.87108 1.21087 0.95109 0.85586 0.92694 0.91915 1.23440 1.00497 0.99716 0.94999 1.22727 0.99763 0.92714 0.98711 0.88777 1.21619 0.98225 0.97499 0.82113 1.45954 1.61177 1.08044 1.19649 1.17630 0.79021 0.84223 0.83797 1.90800 1.51394 1.37473 1.61044 1.22519 0.99311 0.91187 0.96542 1.23987 0.91790 0.97815 0.91171 1.68835 1.08224 1.30891 1.06016 1.19813 0.97858 0.89498 0.96049 1.20824 0.98024 1.00252 0.91922 1.21136 0.97409 0.91998 1.00192 1.21087 0.97821 0.98100 0.95250 1.20985 0.96499 0.97895 0.93776 1.19611 0.99314 0.94130 0.91950 1.68527 1.05214 1.31573 1.05470 1.23929 0.95604 0.99668 1.01819 0.93438 0.78102 0.91252 0.90385 0.91312 0.91075 0.75056 0.79522 0.84013 0.84408 0.84259 0.83582 0.91386 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.20 5.31 -52.55 -0.28 -17.48 16 10 C 0.17 3.22 4.57 -67.03 -0.31 2.91 16 11 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 12 C -0.15 -2.30 7.39 -25.92 -0.19 -2.49 16 13 C -0.12 -1.78 3.62 -89.80 -0.33 -2.10 16 14 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 15 C 0.13 1.68 5.50 -4.04 -0.02 1.66 16 16 N -0.70 -9.03 5.55 -61.13 -0.34 -9.37 16 17 C 0.57 7.70 7.82 -12.15 -0.09 7.61 16 18 O -0.53 -8.20 16.32 5.36 0.09 -8.11 16 19 C 0.06 0.75 6.76 -82.74 -0.56 0.19 16 20 C 0.13 1.43 10.75 -16.92 -0.18 1.25 16 21 N -0.43 -4.88 10.45 -10.53 -0.11 -4.99 16 22 C 0.09 1.00 6.60 -84.70 -0.56 0.44 16 23 C -0.09 -0.70 9.98 -39.49 -0.39 -1.10 16 24 C -0.09 -0.50 9.95 -39.89 -0.40 -0.89 16 25 C -0.10 -0.63 9.95 -39.93 -0.40 -1.03 16 26 C -0.07 -0.62 9.99 -39.41 -0.39 -1.02 16 27 C 0.08 0.86 6.59 -84.79 -0.56 0.30 16 28 N -0.39 -4.80 9.64 -7.39 -0.07 -4.87 16 29 C -0.17 -2.78 7.44 -25.82 -0.19 -2.98 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.38 9.93 7.90 -40.82 -0.32 9.61 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 36 H 0.41 5.18 7.81 -40.82 -0.32 4.86 16 37 H 0.19 1.76 7.62 -52.49 -0.40 1.36 16 38 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.14 0.37 8.06 -52.49 -0.42 -0.06 16 40 H 0.14 0.49 8.06 -52.48 -0.42 0.06 16 41 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -32.17 369.83 -9.89 -42.06 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.63 Total: 11.54 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -4.82 Total: -4.45 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.07 Total: -63.65 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.17 -9.89 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086387118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.129 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds