Wall clock time and date at job start Tue Mar 31 2020 15:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00203 * 2 1 4 4 H 1.48499 * 109.46950 * 269.99811 * 3 2 1 5 5 H 1.48502 * 109.46988 * 29.99806 * 3 2 1 6 6 H 1.48499 * 109.47294 * 149.99469 * 3 2 1 7 7 C 1.38819 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00665 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99574 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00022 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.90687 * 23.74627 * 10 9 7 12 12 C 1.53775 * 113.61484 * 155.00145 * 10 9 7 13 13 C 1.53781 * 87.08397 * 89.11575 * 12 10 9 14 14 H 1.09003 * 113.61749 * 270.80259 * 13 12 10 15 15 C 1.53004 * 113.61835 * 139.97837 * 13 12 10 16 16 N 1.46496 * 109.47237 * 176.53127 * 15 13 12 17 17 C 1.34780 * 119.99707 * 180.02562 * 16 15 13 18 18 O 1.21501 * 120.00146 * 0.02562 * 17 16 15 19 19 C 1.48233 * 119.99829 * 180.02562 * 17 16 15 20 20 C 1.40570 * 119.75000 * 180.02562 * 19 17 16 21 21 N 1.31259 * 120.57186 * 180.02562 * 20 19 17 22 22 C 1.33783 * 119.80621 * 359.95311 * 21 20 19 23 23 C 1.40546 * 120.99711 * 180.02562 * 22 21 20 24 24 C 1.36075 * 119.74928 * 179.97438 * 23 22 21 25 25 C 1.39485 * 121.01849 * 0.02562 * 24 23 22 26 26 C 1.35984 * 120.97847 * 359.97438 * 25 24 23 27 27 C 1.40820 * 119.70179 * 0.02562 * 26 25 24 28 28 N 1.32165 * 119.74687 * 359.97438 * 19 17 16 29 29 C 1.53787 * 87.17248 * 25.38912 * 13 12 10 30 30 H 0.96992 * 119.99902 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99835 * 0.02562 * 9 7 2 32 32 H 1.08999 * 113.61829 * 334.57075 * 12 10 9 33 33 H 1.09006 * 113.61453 * 203.66475 * 12 10 9 34 34 H 1.09003 * 109.46449 * 56.52718 * 15 13 12 35 35 H 1.08997 * 109.46939 * 296.53843 * 15 13 12 36 36 H 0.97004 * 119.99997 * 359.97438 * 16 15 13 37 37 H 1.08000 * 119.71137 * 359.97438 * 20 19 17 38 38 H 1.07997 * 120.12713 * 0.02562 * 23 22 21 39 39 H 1.08000 * 119.49294 * 180.28109 * 24 23 22 40 40 H 1.08004 * 119.50815 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.14915 * 180.02562 * 26 25 24 42 42 H 1.09003 * 113.61073 * 89.15832 * 29 13 12 43 43 H 1.08993 * 113.61576 * 220.06133 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0661 -3.5647 0.4048 12 6 1.2602 -4.8288 0.5960 13 6 0.7204 -5.0791 -0.8221 14 1 -0.1911 -4.5251 -1.0465 15 6 0.6196 -6.5616 -1.1868 16 7 0.0211 -6.6977 -2.5169 17 6 -0.1677 -7.9216 -3.0489 18 8 0.1581 -8.9121 -2.4251 19 6 -0.7727 -8.0594 -4.3951 20 6 -0.9677 -9.3384 -4.9447 21 7 -1.5016 -9.4791 -6.1355 22 6 -1.8649 -8.3970 -6.8334 23 6 -2.4393 -8.5186 -8.1104 24 6 -2.7998 -7.4010 -8.7977 25 6 -2.6082 -6.1303 -8.2552 26 6 -2.0557 -5.9715 -7.0229 27 6 -1.6693 -7.1039 -6.2802 28 7 -1.1257 -6.9787 -5.0691 29 6 1.9978 -4.4015 -1.3456 30 1 -0.4849 0.8400 -0.0004 31 1 0.3556 -2.3880 -0.0002 32 1 0.4938 -4.5190 1.3064 33 1 1.8870 -5.6367 0.9735 34 1 -0.0032 -7.0744 -0.4538 35 1 1.6159 -7.0037 -1.1896 36 1 -0.2400 -5.9070 -3.0145 37 1 -0.6749 -10.2129 -4.3825 38 1 -2.5946 -9.4954 -8.5441 39 1 -3.2451 -7.4994 -9.7768 40 1 -2.9030 -5.2597 -8.8223 41 1 -1.9138 -4.9814 -6.6155 42 1 2.8267 -5.0924 -1.4999 43 1 1.8261 -3.7472 -2.2003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086387118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:58 Heat of formation + Delta-G solvation = 43.992976 kcal Electronic energy + Delta-G solvation = -25782.699615 eV Core-core repulsion = 22020.951230 eV Total energy + Delta-G solvation = -3761.748385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.67576 -40.89967 -39.88421 -38.35562 -36.32483 -35.90618 -34.94278 -32.36164 -31.92831 -31.63973 -28.94636 -26.88604 -26.43337 -25.85806 -25.33515 -23.37176 -23.17264 -22.21776 -20.23605 -19.60913 -19.48989 -19.30261 -18.61997 -17.10346 -16.98789 -16.87274 -16.66605 -16.11697 -15.94903 -15.71398 -15.66855 -15.40905 -15.06508 -14.75846 -14.69439 -14.57028 -13.77258 -13.29787 -13.00543 -12.99822 -12.98065 -12.95243 -12.92414 -12.85805 -12.74896 -12.62769 -12.16761 -12.07652 -11.76320 -11.49386 -11.37060 -10.95349 -10.81999 -10.35014 -10.27323 -10.03933 -9.67606 -8.99682 -7.95203 -5.23418 -1.15981 -0.72977 0.70095 1.27022 1.47938 1.49058 1.57599 1.84617 2.01809 2.55874 2.66949 2.88133 2.94129 3.06265 3.37278 3.56335 3.66222 3.72507 3.78260 3.87432 3.95656 4.08583 4.14114 4.22489 4.32476 4.33705 4.40372 4.70668 4.73623 4.78767 4.83924 4.93667 4.99214 5.02443 5.10061 5.12066 5.20679 5.31064 5.34735 5.44104 5.53404 5.64409 5.66513 5.91376 6.25668 6.28582 6.47139 6.92547 7.33427 8.10876 8.32944 9.28171 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.002456 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.953428 B =11397.261760 C =13212.039925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.144 3.856 11 H 0.062 0.938 12 C -0.131 4.131 13 C -0.105 4.105 14 H 0.078 0.922 15 C 0.137 3.863 16 N -0.697 5.697 17 C 0.574 3.426 18 O -0.554 6.554 19 C 0.042 3.958 20 C 0.120 3.880 21 N -0.436 5.436 22 C 0.076 3.924 23 C -0.104 4.104 24 C -0.067 4.067 25 C -0.085 4.085 26 C -0.094 4.094 27 C 0.055 3.945 28 N -0.403 5.403 29 C -0.155 4.155 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.414 0.586 37 H 0.198 0.802 38 H 0.158 0.842 39 H 0.180 0.820 40 H 0.174 0.826 41 H 0.148 0.852 42 H 0.093 0.907 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.507 -18.319 -18.096 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.034 3.966 11 H 0.080 0.920 12 C -0.170 4.170 13 C -0.124 4.124 14 H 0.096 0.904 15 C 0.014 3.986 16 N -0.347 5.347 17 C 0.358 3.642 18 O -0.432 6.432 19 C -0.114 4.114 20 C -0.054 4.054 21 N -0.150 5.150 22 C -0.049 4.049 23 C -0.123 4.123 24 C -0.087 4.087 25 C -0.105 4.105 26 C -0.113 4.113 27 C -0.073 4.073 28 N -0.121 5.121 29 C -0.196 4.196 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.251 0.749 37 H 0.214 0.786 38 H 0.176 0.824 39 H 0.197 0.803 40 H 0.191 0.809 41 H 0.166 0.834 42 H 0.111 0.889 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.168 -18.799 -17.723 26.348 hybrid contribution -0.129 1.470 0.129 1.481 sum -5.297 -17.329 -17.595 25.257 Atomic orbital electron populations 1.69808 1.06572 1.26058 1.59559 1.25553 0.96383 1.01059 1.03807 0.85155 0.77741 0.79578 0.77389 1.21469 1.22290 1.19427 1.19675 0.91526 0.85194 1.40959 0.90546 1.42314 1.05324 1.00606 1.87573 1.21423 0.95160 0.84923 0.95101 0.92021 1.23335 0.99945 0.98671 0.95070 1.22506 0.98319 0.93600 0.97930 0.90367 1.21502 0.98803 0.95939 0.82356 1.45929 1.61080 1.08092 1.19587 1.17748 0.78498 0.83841 0.84099 1.90773 1.52536 1.38043 1.61822 1.22326 1.00915 0.91791 0.96320 1.24095 0.92122 0.97759 0.91441 1.68852 1.08595 1.31430 1.06106 1.20267 0.98220 0.89154 0.97231 1.21140 0.98198 1.02017 0.90945 1.21642 0.94987 0.90867 1.01181 1.21558 0.95201 0.99703 0.94038 1.21190 0.97881 0.97296 0.94965 1.20017 0.99981 0.95360 0.91898 1.68455 1.05539 1.31794 1.06300 1.23763 0.97338 0.99299 0.99161 0.94027 0.79398 0.92260 0.87215 0.90795 0.90318 0.74929 0.78562 0.82427 0.80315 0.80853 0.83413 0.88882 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.84 13.06 21.65 0.28 -58.56 16 2 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.24 -13.29 9.97 84.03 0.84 -12.45 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 9 N -0.72 -35.67 5.31 -320.17 -1.70 -37.37 16 10 C 0.14 5.47 4.57 45.58 0.21 5.67 16 11 H 0.06 2.34 8.10 -2.39 -0.02 2.32 16 12 C -0.13 -3.93 7.39 31.12 0.23 -3.70 16 13 C -0.10 -3.03 3.62 -10.26 -0.04 -3.06 16 14 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 15 C 0.14 3.44 5.50 86.38 0.47 3.92 16 16 N -0.70 -18.04 5.55 -465.60 -2.58 -20.63 16 17 C 0.57 15.74 7.82 86.90 0.68 16.41 16 18 O -0.55 -17.19 16.32 -3.72 -0.06 -17.25 16 19 C 0.04 1.07 6.76 42.32 0.29 1.36 16 20 C 0.12 2.80 10.75 85.35 0.92 3.71 16 21 N -0.44 -10.05 10.45 -187.22 -1.96 -12.00 16 22 C 0.08 1.60 6.60 40.34 0.27 1.87 16 23 C -0.10 -1.37 9.98 22.33 0.22 -1.15 16 24 C -0.07 -0.50 9.95 22.07 0.22 -0.28 16 25 C -0.09 -0.77 9.95 22.05 0.22 -0.55 16 26 C -0.09 -1.51 9.99 22.38 0.22 -1.29 16 27 C 0.05 1.22 6.59 40.48 0.27 1.48 16 28 N -0.40 -10.22 9.64 -177.29 -1.71 -11.93 16 29 C -0.16 -4.99 7.44 31.18 0.23 -4.76 16 30 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 31 H 0.37 19.88 7.90 -92.71 -0.73 19.15 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.11 2.64 8.10 -2.38 -0.02 2.62 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 1.91 7.87 -2.39 -0.02 1.89 16 36 H 0.41 10.60 7.81 -92.71 -0.72 9.88 16 37 H 0.20 3.88 7.62 -2.91 -0.02 3.86 16 38 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 39 H 0.18 -0.07 8.06 -2.91 -0.02 -0.09 16 40 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 41 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.09 2.55 7.92 -2.39 -0.02 2.53 16 43 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -71.35 369.83 -0.38 -71.73 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: -0.40 Total: 34.86 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 5.71 Total: 3.33 kcal Atomic # 7 Polarization: -132.82 SS G_CDS: -7.66 Total: -140.49 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.06 Total: -17.25 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -71.35 -0.38 -71.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086387118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.726 kcal (2) G-P(sol) polarization free energy of solvation -71.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds