Wall clock time and date at job start Tue Mar 31 2020 15:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00094 * 2 1 4 4 H 1.48491 * 109.47253 * 269.99719 * 3 2 1 5 5 H 1.48499 * 109.47080 * 29.99946 * 3 2 1 6 6 H 1.48500 * 109.47184 * 149.99539 * 3 2 1 7 7 C 1.38812 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00411 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00071 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00160 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.85163 * 23.80459 * 10 9 7 12 12 C 1.53781 * 113.61570 * 155.00405 * 10 9 7 13 13 C 1.53777 * 87.08323 * 89.11370 * 12 10 9 14 14 H 1.09001 * 113.61356 * 270.80103 * 13 12 10 15 15 C 1.53001 * 113.61587 * 139.98284 * 13 12 10 16 16 N 1.46497 * 109.47556 * 174.99882 * 15 13 12 17 17 C 1.34770 * 120.00271 * 179.97438 * 16 15 13 18 18 O 1.21545 * 119.99868 * 0.02562 * 17 16 15 19 19 C 1.47922 * 119.99997 * 180.02562 * 17 16 15 20 20 C 1.38935 * 119.84118 * 180.02562 * 19 17 16 21 21 C 1.40653 * 117.38771 * 180.02562 * 20 19 17 22 22 C 1.40254 * 122.04665 * 180.02562 * 21 20 19 23 23 C 1.36261 * 119.47853 * 179.97438 * 22 21 20 24 24 C 1.39322 * 120.87615 * 359.93216 * 23 22 21 25 25 C 1.36228 * 121.15640 * 0.04812 * 24 23 22 26 26 C 1.40341 * 119.68100 * 359.97438 * 25 24 23 27 27 N 1.33810 * 121.62000 * 180.02562 * 26 25 24 28 28 N 1.28442 * 121.68533 * 179.97438 * 27 26 25 29 29 C 1.53779 * 87.08167 * 25.43462 * 13 12 10 30 30 H 0.96998 * 120.00059 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99626 * 0.02562 * 9 7 2 32 32 H 1.09007 * 113.61221 * 334.56416 * 12 10 9 33 33 H 1.09000 * 113.69387 * 203.67916 * 12 10 9 34 34 H 1.09002 * 109.47058 * 54.99782 * 15 13 12 35 35 H 1.09004 * 109.46626 * 295.00159 * 15 13 12 36 36 H 0.97003 * 119.99290 * 0.02562 * 16 15 13 37 37 H 1.07995 * 121.31129 * 359.72250 * 20 19 17 38 38 H 1.08007 * 120.26056 * 359.92936 * 22 21 20 39 39 H 1.08000 * 119.56523 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.42427 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.16637 * 180.02562 * 25 24 23 42 42 H 1.08997 * 113.61331 * 89.11262 * 29 13 12 43 43 H 1.09001 * 113.61382 * 220.02168 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 3.0652 -3.5637 0.4078 12 6 1.2596 -4.8286 0.5970 13 6 0.7210 -5.0795 -0.8214 14 1 -0.1903 -4.5255 -1.0467 15 6 0.6204 -6.5621 -1.1854 16 7 -0.0105 -6.7004 -2.5004 17 6 -0.2039 -7.9247 -3.0296 18 8 0.1447 -8.9141 -2.4157 19 6 -0.8404 -8.0643 -4.3575 20 6 -1.0387 -9.3280 -4.8997 21 6 -1.6478 -9.4007 -6.1655 22 6 -1.8949 -10.6252 -6.8032 23 6 -2.4887 -10.6347 -8.0296 24 6 -2.8541 -9.4452 -8.6562 25 6 -2.6290 -8.2389 -8.0647 26 6 -2.0191 -8.1872 -6.8018 27 7 -1.7802 -7.0239 -6.1852 28 7 -1.2225 -6.9751 -5.0292 29 6 2.0001 -4.4028 -1.3419 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 0.4926 -4.5184 1.3068 33 1 1.8849 -5.6369 0.9760 34 1 0.0193 -7.0798 -0.4378 35 1 1.6192 -6.9978 -1.2139 36 1 -0.2883 -5.9107 -2.9904 37 1 -0.7326 -10.2193 -4.3724 38 1 -1.6160 -11.5533 -6.3263 39 1 -2.6793 -11.5767 -8.5221 40 1 -3.3238 -9.4801 -9.6281 41 1 -2.9192 -7.3266 -8.5648 42 1 2.8290 -5.0941 -1.4935 43 1 1.8309 -3.7489 -2.1974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086443647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:04 Heat of formation + Delta-G solvation = 75.094913 kcal Electronic energy + Delta-G solvation = -25581.734637 eV Core-core repulsion = 21821.334934 eV Total energy + Delta-G solvation = -3760.399704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.78474 -39.81566 -38.56771 -38.05518 -34.80130 -34.12301 -33.22208 -32.14618 -31.01100 -30.10678 -27.62777 -25.69313 -25.20078 -25.00706 -23.63878 -22.94207 -21.86020 -21.23740 -19.20249 -18.99882 -18.15201 -17.48194 -17.14559 -16.48438 -15.97229 -15.91012 -15.17219 -15.12942 -14.90638 -14.80543 -14.36473 -14.10502 -13.95519 -13.61193 -13.32082 -12.88265 -12.85847 -12.79123 -12.55564 -12.26925 -11.89538 -11.61373 -11.39973 -11.18958 -11.02392 -10.81962 -10.51358 -10.36250 -10.18084 -10.14305 -9.89205 -9.84585 -9.66443 -9.47009 -9.09175 -8.88556 -8.85074 -6.97207 -5.77810 -3.06849 -0.53985 -0.07007 1.20306 1.96590 2.84952 2.88161 3.44318 3.48293 3.49435 3.49819 3.51059 3.79195 4.01525 4.07645 4.23801 4.48896 4.54456 4.58278 4.63503 4.98859 5.06713 5.07338 5.14105 5.20612 5.27663 5.31498 5.47938 5.62253 5.64215 5.67671 5.71517 5.75231 5.86286 5.96644 6.09927 6.11542 6.23154 6.34933 6.40209 6.60954 6.79062 6.91753 7.07694 7.38644 7.71631 7.97826 8.15628 8.41299 9.51909 10.09667 10.43780 11.44586 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018529 B = 0.002117 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.805696 B =13224.796905 C =14454.260995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.062 0.938 12 C -0.147 4.147 13 C -0.121 4.121 14 H 0.095 0.905 15 C 0.129 3.871 16 N -0.699 5.699 17 C 0.574 3.426 18 O -0.538 6.538 19 C -0.005 4.005 20 C -0.029 4.029 21 C -0.074 4.074 22 C -0.095 4.095 23 C -0.097 4.097 24 C -0.093 4.093 25 C -0.078 4.078 26 C 0.071 3.929 27 N -0.197 5.197 28 N -0.188 5.188 29 C -0.169 4.169 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.415 0.585 37 H 0.167 0.833 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.067 0.933 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 -24.807 -16.215 30.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.187 4.187 13 C -0.139 4.139 14 H 0.113 0.887 15 C 0.006 3.994 16 N -0.349 5.349 17 C 0.357 3.643 18 O -0.415 6.415 19 C -0.139 4.139 20 C -0.060 4.060 21 C -0.083 4.083 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.113 4.113 25 C -0.099 4.099 26 C -0.057 4.057 27 N -0.053 5.053 28 N -0.046 5.046 29 C -0.210 4.210 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.251 0.749 37 H 0.184 0.816 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.157 0.843 41 H 0.165 0.835 42 H 0.086 0.914 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.368 -23.729 -15.675 28.941 hybrid contribution -0.010 -0.270 -0.359 0.449 sum -5.378 -23.999 -16.034 29.359 Atomic orbital electron populations 1.69661 1.05118 1.25768 1.57436 1.24768 0.95548 0.97791 1.02818 0.86166 0.78634 0.83713 0.77528 1.21681 1.21788 1.20729 1.19286 0.91107 0.83975 1.42948 0.91003 1.42172 1.05702 0.99420 1.87109 1.21049 0.95086 0.85598 0.92745 0.91946 1.23446 1.00505 0.99709 0.95017 1.22730 0.99842 0.92687 0.98670 0.88656 1.21613 0.97708 0.97527 0.82553 1.45959 1.59976 1.08074 1.20860 1.17469 0.79023 0.84200 0.83590 1.90795 1.51795 1.37679 1.61200 1.22589 1.01955 0.91569 0.97793 1.22591 0.91367 0.99193 0.92832 1.18828 0.99281 0.95154 0.95017 1.21052 0.98430 0.96398 0.95489 1.21146 0.96663 0.99030 0.94812 1.21131 0.97965 0.91833 1.00369 1.20853 0.97137 0.99569 0.92341 1.20490 0.98058 0.90400 0.96710 1.73928 1.07216 1.22459 1.01671 1.73264 1.03751 1.26455 1.01124 1.23902 0.95542 0.99677 1.01884 0.93445 0.78078 0.91281 0.90446 0.91386 0.91152 0.74882 0.81555 0.84098 0.84562 0.84346 0.83517 0.91410 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.71 -17.54 5.31 -52.64 -0.28 -17.82 16 10 C 0.17 3.29 4.56 -67.12 -0.31 2.98 16 11 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 12 C -0.15 -2.36 7.39 -25.92 -0.19 -2.55 16 13 C -0.12 -1.84 3.63 -89.81 -0.33 -2.17 16 14 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 15 C 0.13 1.76 5.51 -4.04 -0.02 1.74 16 16 N -0.70 -9.53 5.55 -61.23 -0.34 -9.87 16 17 C 0.57 8.08 7.80 -12.30 -0.10 7.98 16 18 O -0.54 -8.56 16.35 5.33 0.09 -8.47 16 19 C -0.01 -0.07 6.82 -82.90 -0.57 -0.63 16 20 C -0.03 -0.30 9.51 -38.41 -0.37 -0.66 16 21 C -0.07 -0.68 5.75 -106.80 -0.61 -1.29 16 22 C -0.09 -0.55 9.81 -39.54 -0.39 -0.94 16 23 C -0.10 -0.42 9.96 -39.89 -0.40 -0.82 16 24 C -0.09 -0.43 9.94 -39.90 -0.40 -0.83 16 25 C -0.08 -0.56 10.00 -39.51 -0.40 -0.96 16 26 C 0.07 0.73 6.69 -84.79 -0.57 0.16 16 27 N -0.20 -2.55 11.55 32.24 0.37 -2.18 16 28 N -0.19 -2.57 10.70 33.24 0.36 -2.22 16 29 C -0.17 -2.87 7.43 -25.92 -0.19 -3.07 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.39 10.13 7.90 -40.82 -0.32 9.81 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16 36 H 0.41 5.55 7.80 -40.82 -0.32 5.24 16 37 H 0.17 1.37 7.69 -52.49 -0.40 0.97 16 38 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 39 H 0.14 0.21 8.06 -52.49 -0.42 -0.21 16 40 H 0.14 0.26 8.06 -52.49 -0.42 -0.17 16 41 H 0.15 0.85 8.06 -52.48 -0.42 0.42 16 42 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -33.35 369.91 -9.23 -42.58 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -5.63 Total: 10.75 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -5.07 Total: -8.39 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 0.83 Total: -59.45 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.35 -9.23 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086443647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.673 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds