Wall clock time and date at job start Tue Mar 31 2020 15:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00094 * 2 1 4 4 H 1.48491 * 109.47253 * 269.99719 * 3 2 1 5 5 H 1.48499 * 109.47080 * 29.99946 * 3 2 1 6 6 H 1.48500 * 109.47184 * 149.99539 * 3 2 1 7 7 C 1.38812 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00411 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00071 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00160 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.85163 * 23.80459 * 10 9 7 12 12 C 1.53781 * 113.61570 * 155.00405 * 10 9 7 13 13 C 1.53777 * 87.08323 * 89.11370 * 12 10 9 14 14 H 1.09001 * 113.61356 * 270.80103 * 13 12 10 15 15 C 1.53001 * 113.61587 * 139.98284 * 13 12 10 16 16 N 1.46497 * 109.47556 * 174.99882 * 15 13 12 17 17 C 1.34770 * 120.00271 * 179.97438 * 16 15 13 18 18 O 1.21545 * 119.99868 * 0.02562 * 17 16 15 19 19 C 1.47922 * 119.99997 * 180.02562 * 17 16 15 20 20 C 1.38935 * 119.84118 * 180.02562 * 19 17 16 21 21 C 1.40653 * 117.38771 * 180.02562 * 20 19 17 22 22 C 1.40254 * 122.04665 * 180.02562 * 21 20 19 23 23 C 1.36261 * 119.47853 * 179.97438 * 22 21 20 24 24 C 1.39322 * 120.87615 * 359.93216 * 23 22 21 25 25 C 1.36228 * 121.15640 * 0.04812 * 24 23 22 26 26 C 1.40341 * 119.68100 * 359.97438 * 25 24 23 27 27 N 1.33810 * 121.62000 * 180.02562 * 26 25 24 28 28 N 1.28442 * 121.68533 * 179.97438 * 27 26 25 29 29 C 1.53779 * 87.08167 * 25.43462 * 13 12 10 30 30 H 0.96998 * 120.00059 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99626 * 0.02562 * 9 7 2 32 32 H 1.09007 * 113.61221 * 334.56416 * 12 10 9 33 33 H 1.09000 * 113.69387 * 203.67916 * 12 10 9 34 34 H 1.09002 * 109.47058 * 54.99782 * 15 13 12 35 35 H 1.09004 * 109.46626 * 295.00159 * 15 13 12 36 36 H 0.97003 * 119.99290 * 0.02562 * 16 15 13 37 37 H 1.07995 * 121.31129 * 359.72250 * 20 19 17 38 38 H 1.08007 * 120.26056 * 359.92936 * 22 21 20 39 39 H 1.08000 * 119.56523 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.42427 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.16637 * 180.02562 * 25 24 23 42 42 H 1.08997 * 113.61331 * 89.11262 * 29 13 12 43 43 H 1.09001 * 113.61382 * 220.02168 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 3.0652 -3.5637 0.4078 12 6 1.2596 -4.8286 0.5970 13 6 0.7210 -5.0795 -0.8214 14 1 -0.1903 -4.5255 -1.0467 15 6 0.6204 -6.5621 -1.1854 16 7 -0.0105 -6.7004 -2.5004 17 6 -0.2039 -7.9247 -3.0296 18 8 0.1447 -8.9141 -2.4157 19 6 -0.8404 -8.0643 -4.3575 20 6 -1.0387 -9.3280 -4.8997 21 6 -1.6478 -9.4007 -6.1655 22 6 -1.8949 -10.6252 -6.8032 23 6 -2.4887 -10.6347 -8.0296 24 6 -2.8541 -9.4452 -8.6562 25 6 -2.6290 -8.2389 -8.0647 26 6 -2.0191 -8.1872 -6.8018 27 7 -1.7802 -7.0239 -6.1852 28 7 -1.2225 -6.9751 -5.0292 29 6 2.0001 -4.4028 -1.3419 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 0.4926 -4.5184 1.3068 33 1 1.8849 -5.6369 0.9760 34 1 0.0193 -7.0798 -0.4378 35 1 1.6192 -6.9978 -1.2139 36 1 -0.2883 -5.9107 -2.9904 37 1 -0.7326 -10.2193 -4.3724 38 1 -1.6160 -11.5533 -6.3263 39 1 -2.6793 -11.5767 -8.5221 40 1 -3.3238 -9.4801 -9.6281 41 1 -2.9192 -7.3266 -8.5648 42 1 2.8290 -5.0941 -1.4935 43 1 1.8309 -3.7489 -2.1974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086443647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:04 Heat of formation + Delta-G solvation = 52.259571 kcal Electronic energy + Delta-G solvation = -25582.724852 eV Core-core repulsion = 21821.334934 eV Total energy + Delta-G solvation = -3761.389918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.52170 -40.89655 -39.89019 -38.75249 -36.12488 -35.02145 -34.85513 -32.87264 -32.06010 -31.53477 -28.90853 -26.43779 -26.40086 -26.19031 -25.43046 -23.55921 -23.16753 -22.22418 -20.21171 -19.81119 -19.45696 -19.21058 -18.12362 -17.11837 -17.08123 -16.87901 -16.67242 -16.10090 -15.85901 -15.69784 -15.65607 -15.39464 -14.99661 -14.72787 -14.59027 -14.47999 -13.78440 -13.53595 -13.42102 -13.28368 -13.01787 -12.94350 -12.92583 -12.63747 -12.24312 -12.16584 -12.07754 -11.93577 -11.63716 -11.48753 -11.24954 -10.96742 -10.93160 -10.79683 -10.50556 -10.17947 -9.48113 -8.99774 -7.94972 -5.23418 -1.19076 -0.77954 0.62044 1.19514 1.47410 1.49233 1.57535 1.89425 2.04401 2.55941 2.66794 2.79879 3.16170 3.29289 3.37418 3.43309 3.69732 3.72353 3.77275 3.78376 3.89873 4.11510 4.13165 4.17712 4.32269 4.40240 4.41674 4.50681 4.66542 4.71424 4.73878 4.89850 4.93005 4.98735 5.04912 5.10355 5.20349 5.23656 5.31204 5.34900 5.44240 5.53377 5.66502 5.68748 6.28486 6.29686 6.90204 7.33231 7.33626 8.10950 8.32830 9.28368 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018529 B = 0.002117 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.805696 B =13224.796905 C =14454.260995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.144 3.856 11 H 0.063 0.937 12 C -0.130 4.130 13 C -0.106 4.106 14 H 0.077 0.923 15 C 0.138 3.862 16 N -0.701 5.701 17 C 0.578 3.422 18 O -0.560 6.560 19 C -0.033 4.033 20 C -0.023 4.023 21 C -0.085 4.085 22 C -0.098 4.098 23 C -0.084 4.084 24 C -0.069 4.069 25 C -0.103 4.103 26 C 0.052 3.948 27 N -0.230 5.230 28 N -0.218 5.218 29 C -0.156 4.156 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.414 0.586 37 H 0.184 0.816 38 H 0.169 0.831 39 H 0.177 0.823 40 H 0.176 0.824 41 H 0.153 0.847 42 H 0.094 0.906 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 -27.955 -18.047 33.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.034 3.966 11 H 0.081 0.919 12 C -0.169 4.169 13 C -0.125 4.125 14 H 0.095 0.905 15 C 0.015 3.985 16 N -0.350 5.350 17 C 0.362 3.638 18 O -0.439 6.439 19 C -0.167 4.167 20 C -0.053 4.053 21 C -0.093 4.093 22 C -0.117 4.117 23 C -0.103 4.103 24 C -0.090 4.090 25 C -0.124 4.124 26 C -0.076 4.076 27 N -0.085 5.085 28 N -0.075 5.075 29 C -0.196 4.196 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.250 0.750 37 H 0.201 0.799 38 H 0.186 0.814 39 H 0.195 0.805 40 H 0.193 0.807 41 H 0.170 0.830 42 H 0.112 0.888 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.072 -26.906 -17.509 32.499 hybrid contribution -0.137 0.499 0.015 0.518 sum -5.209 -26.407 -17.494 32.101 Atomic orbital electron populations 1.69819 1.06606 1.26044 1.59546 1.25586 0.96418 1.01171 1.03830 0.85125 0.77743 0.79471 0.77341 1.21577 1.22268 1.19293 1.19686 0.91553 0.85185 1.40950 0.90464 1.42323 1.05325 1.00632 1.87565 1.21391 0.95217 0.84928 0.95068 0.91893 1.23334 0.99934 0.98664 0.94973 1.22513 0.98312 0.93631 0.98039 0.90472 1.21494 0.98307 0.95910 0.82794 1.45968 1.59977 1.08204 1.20846 1.17634 0.78476 0.83751 0.83965 1.90762 1.52988 1.38135 1.62010 1.22427 1.04007 0.92628 0.97598 1.22824 0.90523 0.98672 0.93285 1.19103 0.99295 0.96168 0.94745 1.21439 0.98209 0.95926 0.96113 1.21691 0.94193 1.00511 0.93886 1.21645 0.95348 0.90800 1.01165 1.21090 0.98324 1.01326 0.91676 1.20921 0.98565 0.90206 0.97862 1.73785 1.08426 1.24450 1.01859 1.73129 1.05098 1.27382 1.01929 1.23746 0.97338 0.99341 0.99205 0.94059 0.79434 0.92264 0.87116 0.90802 0.90331 0.74964 0.79922 0.81351 0.80518 0.80685 0.82970 0.88774 0.93840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 3 Si 0.97 46.87 29.55 68.60 2.03 48.90 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.24 -13.61 9.97 84.03 0.84 -12.77 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.72 -36.69 5.31 -320.44 -1.70 -38.39 16 10 C 0.14 5.64 4.56 45.52 0.21 5.85 16 11 H 0.06 2.44 8.10 -2.39 -0.02 2.42 16 12 C -0.13 -4.04 7.39 31.12 0.23 -3.81 16 13 C -0.11 -3.24 3.63 -10.27 -0.04 -3.28 16 14 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 15 C 0.14 3.67 5.51 86.38 0.48 4.14 16 16 N -0.70 -19.56 5.55 -465.90 -2.58 -22.15 16 17 C 0.58 16.62 7.80 86.81 0.68 17.29 16 18 O -0.56 -17.79 16.35 -3.86 -0.06 -17.85 16 19 C -0.03 -0.86 6.82 41.62 0.28 -0.58 16 20 C -0.02 -0.47 9.51 23.03 0.22 -0.25 16 21 C -0.08 -1.45 5.75 -21.28 -0.12 -1.57 16 22 C -0.10 -0.81 9.81 22.30 0.22 -0.60 16 23 C -0.08 -0.33 9.96 22.07 0.22 -0.11 16 24 C -0.07 -0.38 9.94 22.06 0.22 -0.16 16 25 C -0.10 -1.34 10.00 22.31 0.22 -1.12 16 26 C 0.05 1.08 6.69 40.28 0.27 1.35 16 27 N -0.23 -6.32 11.55 -51.92 -0.60 -6.92 16 28 N -0.22 -6.38 10.70 -48.75 -0.52 -6.90 16 29 C -0.16 -5.26 7.43 31.12 0.23 -5.03 16 30 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.37 20.45 7.90 -92.70 -0.73 19.72 16 32 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.11 2.74 8.10 -2.39 -0.02 2.72 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 2.00 7.84 -2.39 -0.02 1.98 16 36 H 0.41 11.76 7.80 -92.71 -0.72 11.03 16 37 H 0.18 2.85 7.69 -2.91 -0.02 2.83 16 38 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 39 H 0.18 -0.63 8.06 -2.91 -0.02 -0.66 16 40 H 0.18 -0.30 8.06 -2.91 -0.02 -0.32 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 42 H 0.09 2.70 7.90 -2.39 -0.02 2.68 16 43 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -75.98 369.91 1.06 -74.91 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: -0.40 Total: 33.07 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 4.62 Total: -4.71 kcal Atomic # 7 Polarization: -129.21 SS G_CDS: -5.12 Total: -134.33 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.06 Total: -17.85 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -75.98 1.06 -74.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086443647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.173 kcal (2) G-P(sol) polarization free energy of solvation -75.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds