Wall clock time and date at job start Tue Mar 31 2020 14:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00268 * 2 1 4 4 H 1.48494 * 109.47330 * 270.00454 * 3 2 1 5 5 H 1.48509 * 109.46886 * 30.00322 * 3 2 1 6 6 H 1.48498 * 109.47077 * 150.00091 * 3 2 1 7 7 C 1.38815 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00352 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99826 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00379 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61720 * 154.99777 * 10 9 7 12 12 C 1.53776 * 87.07767 * 89.11826 * 11 10 9 13 13 C 1.52997 * 113.61488 * 139.98451 * 12 11 10 14 14 N 1.46499 * 109.47555 * 176.52790 * 13 12 11 15 15 C 1.34777 * 120.00199 * 180.02562 * 14 13 12 16 16 O 1.21493 * 119.99885 * 359.97438 * 15 14 13 17 17 C 1.48351 * 120.00039 * 180.27215 * 15 14 13 18 18 C 1.40169 * 119.20600 * 179.71882 * 17 15 14 19 19 C 1.36616 * 119.70982 * 179.97438 * 18 17 15 20 20 C 1.40598 * 118.20888 * 0.02562 * 19 18 17 21 21 C 1.40745 * 121.38073 * 179.97438 * 20 19 18 22 22 C 1.36586 * 118.12869 * 180.02562 * 21 20 19 23 23 C 1.39419 * 119.85292 * 359.97438 * 22 21 20 24 24 N 1.31024 * 121.84019 * 0.02785 * 23 22 21 25 25 C 1.33860 * 121.42178 * 359.94951 * 24 23 22 26 26 N 1.31886 * 119.20113 * 359.45288 * 17 15 14 27 27 C 1.53777 * 87.17783 * 25.38760 * 12 11 10 28 28 H 0.96997 * 119.99842 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99908 * 359.97438 * 9 7 2 30 30 H 1.08999 * 112.84652 * 23.80258 * 10 9 7 31 31 H 1.08998 * 113.61159 * 334.56946 * 11 10 9 32 32 H 1.08995 * 113.61157 * 203.66346 * 11 10 9 33 33 H 1.09003 * 113.61770 * 270.79794 * 12 11 10 34 34 H 1.08998 * 109.47382 * 56.52351 * 13 12 11 35 35 H 1.09002 * 109.47216 * 296.52788 * 13 12 11 36 36 H 0.97001 * 120.00074 * 359.97438 * 14 13 12 37 37 H 1.07996 * 120.14450 * 359.96130 * 18 17 15 38 38 H 1.08005 * 120.89756 * 179.97438 * 19 18 17 39 39 H 1.07995 * 120.93137 * 0.02562 * 21 20 19 40 40 H 1.08003 * 120.06524 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.08514 * 179.97438 * 23 22 21 42 42 H 1.09002 * 113.61320 * 89.15554 * 27 12 11 43 43 H 1.08998 * 113.61710 * 220.06174 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.2601 -4.8288 0.5950 12 6 0.7204 -5.0791 -0.8231 13 6 0.6195 -6.5616 -1.1876 14 7 0.0210 -6.6978 -2.5178 15 6 -0.1679 -7.9216 -3.0498 16 8 0.1587 -8.9119 -2.4263 17 6 -0.7684 -8.0593 -4.3993 18 6 -0.9518 -9.3399 -4.9389 19 6 -1.5044 -9.4786 -6.1806 20 6 -1.8720 -8.3146 -6.8783 21 6 -2.4462 -8.3798 -8.1616 22 6 -2.7775 -7.2075 -8.7792 23 6 -2.5439 -5.9935 -8.1348 24 7 -2.0092 -5.9368 -6.9400 25 6 -1.6611 -7.0468 -6.2778 26 7 -1.1217 -6.9740 -5.0601 27 6 1.9977 -4.4015 -1.3466 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 0.0002 30 1 3.0655 -3.5639 0.4049 31 1 0.4938 -4.5189 1.3055 32 1 1.8870 -5.6367 0.9724 33 1 -0.1911 -4.5251 -1.0475 34 1 -0.0033 -7.0744 -0.4547 35 1 1.6158 -7.0037 -1.1906 36 1 -0.2401 -5.9071 -3.0155 37 1 -0.6574 -10.2130 -4.3757 38 1 -1.6541 -10.4560 -6.6150 39 1 -2.6198 -9.3302 -8.6444 40 1 -3.2203 -7.2212 -9.7642 41 1 -2.8104 -5.0740 -8.6347 42 1 2.8266 -5.0923 -1.5009 43 1 1.8260 -3.7472 -2.2013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091040193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:14 Heat of formation + Delta-G solvation = 70.576931 kcal Electronic energy + Delta-G solvation = -25780.034383 eV Core-core repulsion = 22019.438765 eV Total energy + Delta-G solvation = -3760.595618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.65080 -39.90014 -38.59524 -37.72777 -34.87844 -34.40628 -33.16651 -31.61302 -31.35275 -30.10292 -27.69713 -25.75253 -25.00753 -24.60786 -23.61717 -23.03242 -21.81146 -21.07571 -19.30947 -18.64564 -18.03851 -17.62049 -17.23034 -16.44844 -16.01575 -15.78338 -15.23574 -15.05829 -14.81171 -14.65937 -14.51684 -14.11297 -13.89895 -13.57046 -13.45599 -13.32692 -12.84215 -12.51597 -12.34346 -12.20475 -11.87359 -11.54659 -11.36231 -11.10357 -11.00594 -10.80888 -10.48660 -10.35244 -10.13641 -9.84887 -9.65045 -9.50516 -9.41668 -9.37451 -9.33559 -8.98603 -8.84182 -6.95802 -5.76592 -3.05540 -0.36201 0.07137 1.43244 2.00566 2.88510 2.95108 3.30776 3.45045 3.50047 3.51721 3.75426 3.93420 4.15311 4.18504 4.32202 4.42554 4.59337 4.60971 4.84463 4.88872 5.09533 5.10448 5.19729 5.26879 5.36877 5.42750 5.49356 5.65165 5.66749 5.72319 5.73753 5.88650 5.98501 6.12308 6.14179 6.25195 6.38675 6.42170 6.62869 6.81255 6.87013 6.94090 7.09799 7.44906 7.70957 7.72721 8.06479 8.42549 9.53113 10.11073 10.45210 11.45888 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.002482 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.830956 B =11277.242241 C =13122.379773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 C -0.147 4.147 12 C -0.120 4.120 13 C 0.128 3.872 14 N -0.696 5.696 15 C 0.564 3.436 16 O -0.534 6.534 17 C 0.148 3.852 18 C -0.130 4.130 19 C -0.047 4.047 20 C -0.144 4.144 21 C -0.047 4.047 22 C -0.172 4.172 23 C 0.160 3.840 24 N -0.455 5.455 25 C 0.302 3.698 26 N -0.432 5.432 27 C -0.169 4.169 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.416 0.584 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.170 0.830 42 H 0.067 0.933 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 -21.954 -17.677 28.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.186 4.186 12 C -0.139 4.139 13 C 0.005 3.995 14 N -0.347 5.347 15 C 0.347 3.653 16 O -0.410 6.410 17 C -0.010 4.010 18 C -0.150 4.150 19 C -0.074 4.074 20 C -0.149 4.149 21 C -0.074 4.074 22 C -0.192 4.192 23 C -0.018 4.018 24 N -0.164 5.164 25 C 0.064 3.936 26 N -0.145 5.145 27 C -0.210 4.210 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.253 0.747 37 H 0.175 0.825 38 H 0.168 0.832 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.187 0.813 42 H 0.086 0.914 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.393 -20.795 -16.316 26.976 hybrid contribution -0.406 -0.296 -1.245 1.343 sum -5.799 -21.091 -17.561 28.051 Atomic orbital electron populations 1.69661 1.05125 1.25754 1.57469 1.24766 0.95537 0.97776 1.02836 0.86172 0.78643 0.83739 0.77529 1.21684 1.21780 1.20721 1.19286 0.91102 0.83983 1.42907 0.91010 1.42176 1.05710 0.99436 1.87098 1.21086 0.95064 0.85592 0.92716 1.23438 1.00481 0.99702 0.95028 1.22723 0.99834 0.92741 0.98618 1.21607 0.98143 0.97497 0.82212 1.45995 1.60848 1.08258 1.19583 1.17849 0.79108 0.84140 0.84163 1.90783 1.51469 1.37577 1.61208 1.21529 0.95386 0.89223 0.94825 1.21846 0.98587 0.98532 0.96079 1.21465 0.94262 0.98094 0.93603 1.19750 1.02354 0.95664 0.97114 1.21501 0.93779 0.99739 0.92395 1.22092 1.01672 0.93364 1.02101 1.23212 0.90749 0.98450 0.89364 1.67693 1.10513 1.29771 1.08389 1.19218 0.95865 0.87635 0.90911 1.67403 1.08941 1.31616 1.06498 1.23922 0.95578 0.99672 1.01839 0.93449 0.78082 0.91951 0.91275 0.90432 0.88718 0.91391 0.91154 0.74737 0.82535 0.83215 0.83766 0.83676 0.81254 0.91428 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.71 -17.76 5.31 -52.55 -0.28 -18.04 16 10 C 0.17 3.35 4.57 -67.03 -0.31 3.04 16 11 C -0.15 -2.40 7.39 -25.92 -0.19 -2.59 16 12 C -0.12 -1.89 3.62 -89.81 -0.33 -2.22 16 13 C 0.13 1.80 5.50 -4.04 -0.02 1.78 16 14 N -0.70 -9.86 5.54 -61.09 -0.34 -10.20 16 15 C 0.56 8.09 7.81 -12.10 -0.09 7.99 16 16 O -0.53 -8.58 16.28 5.37 0.09 -8.49 16 17 C 0.15 1.89 6.75 -82.96 -0.56 1.33 16 18 C -0.13 -1.26 9.54 -39.44 -0.38 -1.64 16 19 C -0.05 -0.36 9.89 -39.28 -0.39 -0.74 16 20 C -0.14 -1.32 5.75 -106.68 -0.61 -1.93 16 21 C -0.05 -0.28 9.90 -39.23 -0.39 -0.67 16 22 C -0.17 -0.92 10.04 -39.74 -0.40 -1.32 16 23 C 0.16 1.25 11.14 -17.46 -0.19 1.06 16 24 N -0.46 -5.70 10.43 -12.59 -0.13 -5.83 16 25 C 0.30 3.86 7.62 -157.90 -1.20 2.66 16 26 N -0.43 -6.08 9.56 -9.19 -0.09 -6.17 16 27 C -0.17 -2.95 7.44 -25.83 -0.19 -3.14 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.39 10.27 7.90 -40.82 -0.32 9.94 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 33 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 36 H 0.42 5.97 7.78 -40.82 -0.32 5.65 16 37 H 0.16 1.31 7.60 -52.49 -0.40 0.91 16 38 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 39 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 40 H 0.15 0.27 8.06 -52.48 -0.42 -0.15 16 41 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -34.86 369.68 -10.61 -45.47 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -5.63 Total: 11.52 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -5.50 Total: -3.76 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: -0.11 Total: -67.84 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.86 -10.61 -45.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091040193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.042 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds