Wall clock time and date at job start Tue Mar 31 2020 14:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00268 * 2 1 4 4 H 1.48494 * 109.47330 * 270.00454 * 3 2 1 5 5 H 1.48509 * 109.46886 * 30.00322 * 3 2 1 6 6 H 1.48498 * 109.47077 * 150.00091 * 3 2 1 7 7 C 1.38815 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00352 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99826 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00379 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61720 * 154.99777 * 10 9 7 12 12 C 1.53776 * 87.07767 * 89.11826 * 11 10 9 13 13 C 1.52997 * 113.61488 * 139.98451 * 12 11 10 14 14 N 1.46499 * 109.47555 * 176.52790 * 13 12 11 15 15 C 1.34777 * 120.00199 * 180.02562 * 14 13 12 16 16 O 1.21493 * 119.99885 * 359.97438 * 15 14 13 17 17 C 1.48351 * 120.00039 * 180.27215 * 15 14 13 18 18 C 1.40169 * 119.20600 * 179.71882 * 17 15 14 19 19 C 1.36616 * 119.70982 * 179.97438 * 18 17 15 20 20 C 1.40598 * 118.20888 * 0.02562 * 19 18 17 21 21 C 1.40745 * 121.38073 * 179.97438 * 20 19 18 22 22 C 1.36586 * 118.12869 * 180.02562 * 21 20 19 23 23 C 1.39419 * 119.85292 * 359.97438 * 22 21 20 24 24 N 1.31024 * 121.84019 * 0.02785 * 23 22 21 25 25 C 1.33860 * 121.42178 * 359.94951 * 24 23 22 26 26 N 1.31886 * 119.20113 * 359.45288 * 17 15 14 27 27 C 1.53777 * 87.17783 * 25.38760 * 12 11 10 28 28 H 0.96997 * 119.99842 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99908 * 359.97438 * 9 7 2 30 30 H 1.08999 * 112.84652 * 23.80258 * 10 9 7 31 31 H 1.08998 * 113.61159 * 334.56946 * 11 10 9 32 32 H 1.08995 * 113.61157 * 203.66346 * 11 10 9 33 33 H 1.09003 * 113.61770 * 270.79794 * 12 11 10 34 34 H 1.08998 * 109.47382 * 56.52351 * 13 12 11 35 35 H 1.09002 * 109.47216 * 296.52788 * 13 12 11 36 36 H 0.97001 * 120.00074 * 359.97438 * 14 13 12 37 37 H 1.07996 * 120.14450 * 359.96130 * 18 17 15 38 38 H 1.08005 * 120.89756 * 179.97438 * 19 18 17 39 39 H 1.07995 * 120.93137 * 0.02562 * 21 20 19 40 40 H 1.08003 * 120.06524 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.08514 * 179.97438 * 23 22 21 42 42 H 1.09002 * 113.61320 * 89.15554 * 27 12 11 43 43 H 1.08998 * 113.61710 * 220.06174 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.2601 -4.8288 0.5950 12 6 0.7204 -5.0791 -0.8231 13 6 0.6195 -6.5616 -1.1876 14 7 0.0210 -6.6978 -2.5178 15 6 -0.1679 -7.9216 -3.0498 16 8 0.1587 -8.9119 -2.4263 17 6 -0.7684 -8.0593 -4.3993 18 6 -0.9518 -9.3399 -4.9389 19 6 -1.5044 -9.4786 -6.1806 20 6 -1.8720 -8.3146 -6.8783 21 6 -2.4462 -8.3798 -8.1616 22 6 -2.7775 -7.2075 -8.7792 23 6 -2.5439 -5.9935 -8.1348 24 7 -2.0092 -5.9368 -6.9400 25 6 -1.6611 -7.0468 -6.2778 26 7 -1.1217 -6.9740 -5.0601 27 6 1.9977 -4.4015 -1.3466 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 0.0002 30 1 3.0655 -3.5639 0.4049 31 1 0.4938 -4.5189 1.3055 32 1 1.8870 -5.6367 0.9724 33 1 -0.1911 -4.5251 -1.0475 34 1 -0.0033 -7.0744 -0.4547 35 1 1.6158 -7.0037 -1.1906 36 1 -0.2401 -5.9071 -3.0155 37 1 -0.6574 -10.2130 -4.3757 38 1 -1.6541 -10.4560 -6.6150 39 1 -2.6198 -9.3302 -8.6444 40 1 -3.2203 -7.2212 -9.7642 41 1 -2.8104 -5.0740 -8.6347 42 1 2.8266 -5.0923 -1.5009 43 1 1.8260 -3.7472 -2.2013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091040193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:13 Heat of formation + Delta-G solvation = 46.062677 kcal Electronic energy + Delta-G solvation = -25781.097401 eV Core-core repulsion = 22019.438765 eV Total energy + Delta-G solvation = -3761.658636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.35452 -40.96570 -39.95790 -38.54391 -36.13988 -35.28099 -34.88428 -32.40508 -32.08578 -31.87093 -28.98889 -26.66776 -26.45366 -25.67018 -25.17845 -23.67770 -23.19075 -22.08165 -20.25088 -19.75750 -19.36383 -19.05988 -18.21276 -17.29543 -17.10245 -16.78035 -16.67915 -16.06859 -15.85176 -15.77956 -15.67312 -15.19291 -15.10623 -14.77940 -14.60505 -14.38384 -14.00319 -13.78902 -13.34858 -13.22228 -12.95467 -12.92343 -12.88270 -12.64509 -12.17779 -12.16834 -12.08791 -11.97234 -11.59638 -11.50148 -11.23952 -10.95141 -10.81377 -10.25174 -10.12593 -10.03536 -9.92253 -9.01365 -7.96072 -5.24796 -1.01960 -0.57216 0.80711 1.25053 1.46312 1.48419 1.56765 1.91416 2.09140 2.53078 2.54997 3.03120 3.35418 3.35996 3.42135 3.61116 3.69766 3.74179 3.76228 3.87947 3.92048 4.04553 4.12003 4.24294 4.30328 4.38519 4.45230 4.65157 4.67070 4.71003 4.81549 4.90978 4.93562 4.96615 5.08971 5.11226 5.19645 5.20664 5.32771 5.42463 5.51672 5.59251 5.64640 6.09485 6.27367 6.38268 6.90501 7.07372 7.31890 8.09306 8.31373 9.27452 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.002482 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.830956 B =11277.242241 C =13122.379773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.975 3.025 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.078 0.922 9 N -0.721 5.721 10 C 0.145 3.855 11 C -0.129 4.129 12 C -0.107 4.107 13 C 0.137 3.863 14 N -0.700 5.700 15 C 0.564 3.436 16 O -0.556 6.556 17 C 0.124 3.876 18 C -0.143 4.143 19 C -0.023 4.023 20 C -0.153 4.153 21 C -0.039 4.039 22 C -0.162 4.162 23 C 0.157 3.843 24 N -0.517 5.517 25 C 0.267 3.733 26 N -0.473 5.473 27 C -0.156 4.156 28 H 0.251 0.749 29 H 0.373 0.627 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.413 0.587 37 H 0.167 0.833 38 H 0.200 0.800 39 H 0.191 0.809 40 H 0.190 0.810 41 H 0.193 0.807 42 H 0.094 0.906 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.017 -24.556 -20.107 32.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.359 5.359 10 C 0.035 3.965 11 C -0.168 4.168 12 C -0.125 4.125 13 C 0.014 3.986 14 N -0.350 5.350 15 C 0.349 3.651 16 O -0.434 6.434 17 C -0.031 4.031 18 C -0.164 4.164 19 C -0.049 4.049 20 C -0.159 4.159 21 C -0.065 4.065 22 C -0.181 4.181 23 C -0.019 4.019 24 N -0.227 5.227 25 C 0.029 3.971 26 N -0.186 5.186 27 C -0.197 4.197 28 H 0.060 0.940 29 H 0.205 0.795 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.249 0.751 37 H 0.185 0.815 38 H 0.217 0.783 39 H 0.208 0.792 40 H 0.207 0.793 41 H 0.210 0.790 42 H 0.112 0.888 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.310 -23.441 -18.746 30.481 hybrid contribution -0.461 0.474 -0.663 0.936 sum -5.771 -22.968 -19.409 30.619 Atomic orbital electron populations 1.69823 1.06666 1.26086 1.59537 1.25599 0.96412 1.01217 1.03760 0.85121 0.77771 0.79403 0.77363 1.21565 1.22173 1.19218 1.19692 0.91560 0.85177 1.41017 0.90439 1.42333 1.05317 1.00683 1.87558 1.21422 0.95243 0.84915 0.94908 1.23325 0.99921 0.98679 0.94874 1.22503 0.98203 0.93690 0.98145 1.21490 0.98769 0.95852 0.82458 1.46026 1.60979 1.08411 1.19587 1.18156 0.78530 0.83581 0.84851 1.90746 1.52589 1.37969 1.62082 1.21390 0.96954 0.90517 0.94262 1.21992 0.99663 0.97356 0.97391 1.21992 0.91262 0.99580 0.92099 1.20064 1.02480 0.94652 0.98673 1.22055 0.91791 1.01966 0.90680 1.22547 1.00213 0.91982 1.03386 1.23853 0.88954 1.00972 0.88164 1.67626 1.13332 1.30974 1.10743 1.19521 0.97136 0.89448 0.90990 1.67217 1.10560 1.32779 1.08079 1.23769 0.97367 0.99341 0.99187 0.94027 0.79491 0.91783 0.92210 0.87007 0.90790 0.90804 0.90286 0.75124 0.81526 0.78274 0.79164 0.79318 0.78988 0.88776 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.92 13.06 21.65 0.28 -60.64 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.97 47.20 29.55 68.60 2.03 49.23 16 4 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.24 -13.81 9.97 84.03 0.84 -12.97 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.72 -37.37 5.31 -320.17 -1.70 -39.06 16 10 C 0.15 5.82 4.57 45.58 0.21 6.02 16 11 C -0.13 -4.12 7.39 31.12 0.23 -3.89 16 12 C -0.11 -3.40 3.62 -10.27 -0.04 -3.43 16 13 C 0.14 3.83 5.50 86.38 0.47 4.30 16 14 N -0.70 -20.71 5.54 -465.49 -2.58 -23.29 16 15 C 0.56 16.79 7.81 86.94 0.68 17.47 16 16 O -0.56 -18.08 16.28 -3.69 -0.06 -18.14 16 17 C 0.12 3.32 6.75 42.30 0.29 3.61 16 18 C -0.14 -2.67 9.54 22.36 0.21 -2.46 16 19 C -0.02 -0.28 9.89 22.47 0.22 -0.06 16 20 C -0.15 -2.51 5.75 -21.20 -0.12 -2.63 16 21 C -0.04 -0.29 9.90 22.50 0.22 -0.07 16 22 C -0.16 -1.11 10.04 22.17 0.22 -0.88 16 23 C 0.16 2.26 11.14 85.10 0.95 3.21 16 24 N -0.52 -13.37 10.43 -193.76 -2.02 -15.39 16 25 C 0.27 7.00 7.62 135.12 1.03 8.03 16 26 N -0.47 -14.21 9.56 -182.98 -1.75 -15.96 16 27 C -0.16 -5.47 7.44 31.18 0.23 -5.24 16 28 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.37 20.80 7.90 -92.71 -0.73 20.07 16 30 H 0.06 2.53 8.10 -2.39 -0.02 2.51 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.11 2.85 8.10 -2.39 -0.02 2.83 16 33 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.08 2.10 7.88 -2.39 -0.02 2.08 16 36 H 0.41 12.81 7.78 -92.71 -0.72 12.09 16 37 H 0.17 2.63 7.60 -2.91 -0.02 2.61 16 38 H 0.20 0.32 8.06 -2.91 -0.02 0.30 16 39 H 0.19 -0.36 8.06 -2.91 -0.02 -0.38 16 40 H 0.19 -0.38 8.06 -2.91 -0.02 -0.40 16 41 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.09 2.81 7.92 -2.39 -0.02 2.79 16 43 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -81.46 369.68 -0.08 -81.55 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.40 Total: 34.82 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 6.11 Total: 6.89 kcal Atomic # 7 Polarization: -146.57 SS G_CDS: -7.77 Total: -154.34 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.06 Total: -18.14 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -81.46 -0.08 -81.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091040193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.608 kcal (2) G-P(sol) polarization free energy of solvation -81.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds