Wall clock time and date at job start Tue Mar 31 2020 14:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00262 * 2 1 4 4 H 1.48500 * 109.47254 * 270.00917 * 3 2 1 5 5 H 1.48500 * 109.46755 * 30.00832 * 3 2 1 6 6 H 1.48501 * 109.47178 * 150.00192 * 3 2 1 7 7 C 1.38812 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99673 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00241 * 180.02562 * 9 7 2 11 11 C 1.53769 * 113.61661 * 154.99981 * 10 9 7 12 12 C 1.53781 * 87.08473 * 89.11553 * 11 10 9 13 13 C 1.53003 * 113.61687 * 139.97914 * 12 11 10 14 14 N 1.46490 * 109.47024 * 176.52896 * 13 12 11 15 15 C 1.34776 * 119.99918 * 179.97438 * 14 13 12 16 16 O 1.21548 * 120.00051 * 0.02562 * 15 14 13 17 17 C 1.47895 * 120.00377 * 179.97438 * 15 14 13 18 18 N 1.32139 * 120.03128 * 359.97438 * 17 15 14 19 19 C 1.31977 * 122.77354 * 180.02562 * 18 17 15 20 20 C 1.37785 * 121.72458 * 0.02562 * 19 18 17 21 21 C 1.40380 * 118.72807 * 359.97438 * 20 19 18 22 22 C 1.40643 * 122.27683 * 179.97438 * 21 20 19 23 23 C 1.36637 * 117.95137 * 180.02562 * 22 21 20 24 24 C 1.39401 * 119.92801 * 0.02562 * 23 22 21 25 25 N 1.31204 * 121.85250 * 359.97438 * 24 23 22 26 26 C 1.33259 * 121.22277 * 0.02562 * 25 24 23 27 27 C 1.53782 * 87.16819 * 25.39085 * 12 11 10 28 28 H 0.97004 * 119.99987 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00104 * 359.97438 * 9 7 2 30 30 H 1.08999 * 112.84598 * 23.79685 * 10 9 7 31 31 H 1.09004 * 113.61557 * 334.56389 * 11 10 9 32 32 H 1.09003 * 113.61572 * 203.66458 * 11 10 9 33 33 H 1.08994 * 113.61358 * 270.79863 * 12 11 10 34 34 H 1.09003 * 109.46518 * 56.53226 * 13 12 11 35 35 H 1.09001 * 109.46893 * 296.53704 * 13 12 11 36 36 H 0.96996 * 120.00589 * 0.02562 * 14 13 12 37 37 H 1.07999 * 119.14167 * 180.28497 * 19 18 17 38 38 H 1.08001 * 120.63274 * 180.02562 * 20 19 18 39 39 H 1.07997 * 121.02524 * 0.02581 * 22 21 20 40 40 H 1.08008 * 120.04091 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.07692 * 180.02562 * 24 23 22 42 42 H 1.08994 * 113.61377 * 89.16610 * 27 12 11 43 43 H 1.09006 * 113.61286 * 220.06035 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.2601 -4.8287 0.5949 12 6 0.7203 -5.0791 -0.8231 13 6 0.6194 -6.5616 -1.1877 14 7 0.0208 -6.6977 -2.5178 15 6 -0.1671 -7.9215 -3.0502 16 8 0.1597 -8.9123 -2.4266 17 6 -0.7719 -8.0591 -4.3928 18 7 -1.1288 -6.9825 -5.0708 19 6 -1.6732 -7.0423 -6.2716 20 6 -1.9072 -8.2449 -6.9019 21 6 -1.5536 -9.4325 -6.2422 22 6 -1.7594 -10.7001 -6.8156 23 6 -1.3825 -11.7980 -6.0948 24 6 -0.8142 -11.6393 -4.8319 25 7 -0.6246 -10.4541 -4.3019 26 6 -0.9699 -9.3434 -4.9521 27 6 1.9977 -4.4015 -1.3466 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 0.0002 30 1 3.0655 -3.5639 0.4048 31 1 0.4937 -4.5189 1.3055 32 1 1.8869 -5.6367 0.9724 33 1 -0.1912 -4.5251 -1.0474 34 1 -0.0035 -7.0744 -0.4548 35 1 1.6158 -7.0036 -1.1906 36 1 -0.2397 -5.9071 -3.0157 37 1 -1.9384 -6.1244 -6.7751 38 1 -2.3533 -8.2733 -7.8850 39 1 -2.2017 -10.8026 -7.7955 40 1 -1.5254 -12.7878 -6.5027 41 1 -0.5209 -12.5165 -4.2743 42 1 2.8265 -5.0924 -1.5010 43 1 1.8260 -3.7472 -2.2014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091075770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:28 Heat of formation + Delta-G solvation = 71.924820 kcal Electronic energy + Delta-G solvation = -25946.110470 eV Core-core repulsion = 22185.573301 eV Total energy + Delta-G solvation = -3760.537169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.64829 -39.51924 -38.50422 -38.11236 -34.55704 -34.08889 -33.14597 -31.88517 -30.99510 -30.04633 -27.50676 -25.61341 -24.98607 -24.48802 -23.95405 -23.30204 -21.60283 -20.75603 -19.15633 -18.39093 -17.90420 -17.86895 -17.21606 -16.52426 -15.86441 -15.66363 -15.11500 -14.92523 -14.74412 -14.64463 -14.46269 -14.01719 -13.80378 -13.54812 -13.28907 -13.26922 -12.87785 -12.82749 -12.61862 -12.18433 -11.85055 -11.34659 -11.16585 -11.00303 -10.81286 -10.44196 -10.40624 -10.24861 -10.14263 -9.87188 -9.76678 -9.65021 -9.51318 -9.33166 -8.95507 -8.85172 -8.72975 -6.96139 -5.77457 -3.06167 -0.44353 0.27873 1.27148 2.39290 3.02703 3.04371 3.44073 3.49281 3.50942 3.77437 3.79646 3.88567 4.05418 4.19825 4.32042 4.37654 4.58672 4.72796 4.91146 4.98030 5.09739 5.15143 5.17136 5.21946 5.32617 5.45103 5.49393 5.63859 5.71164 5.77147 5.87018 5.94152 6.03470 6.14771 6.17946 6.28124 6.43711 6.52845 6.66296 6.81992 6.96838 7.11006 7.24955 7.49306 7.71471 7.72185 8.29866 8.41809 9.52371 10.10652 10.44936 11.45015 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022545 B = 0.002201 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.688426 B =12716.994075 C =13673.818261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.147 4.147 12 C -0.119 4.119 13 C 0.131 3.869 14 N -0.706 5.706 15 C 0.561 3.439 16 O -0.501 6.501 17 C 0.144 3.856 18 N -0.441 5.441 19 C 0.078 3.922 20 C -0.124 4.124 21 C -0.085 4.085 22 C -0.064 4.064 23 C -0.156 4.156 24 C 0.131 3.869 25 N -0.421 5.421 26 C 0.106 3.894 27 C -0.168 4.168 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.411 0.589 37 H 0.169 0.831 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.166 0.834 42 H 0.067 0.933 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.311 -24.143 -16.110 29.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.138 4.138 13 C 0.008 3.992 14 N -0.358 5.358 15 C 0.343 3.657 16 O -0.373 6.373 17 C -0.009 4.009 18 N -0.153 5.153 19 C -0.068 4.068 20 C -0.145 4.145 21 C -0.092 4.092 22 C -0.090 4.090 23 C -0.177 4.177 24 C -0.043 4.043 25 N -0.128 5.128 26 C -0.019 4.019 27 C -0.209 4.209 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.247 0.753 37 H 0.186 0.814 38 H 0.165 0.835 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.183 0.817 42 H 0.086 0.914 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.469 -23.589 -14.451 28.022 hybrid contribution -0.688 0.369 -1.782 1.946 sum -5.157 -23.219 -16.233 28.797 Atomic orbital electron populations 1.69663 1.05113 1.25717 1.57572 1.24763 0.95544 0.97766 1.02907 0.86169 0.78655 0.83739 0.77502 1.21719 1.21798 1.20722 1.19293 0.91112 0.83994 1.42772 0.91010 1.42174 1.05701 0.99438 1.87119 1.21093 0.95054 0.85583 0.92775 1.23436 1.00474 0.99662 0.95117 1.22709 0.99668 0.92918 0.98506 1.21524 0.98043 0.97157 0.82428 1.45934 1.62253 1.08045 1.19542 1.17586 0.79819 0.84144 0.84135 1.90854 1.49196 1.37083 1.60210 1.21586 0.96795 0.87162 0.95382 1.67389 1.08118 1.31504 1.08305 1.22648 0.95541 0.98228 0.90431 1.22408 0.99096 0.92022 1.00942 1.18984 0.99673 0.95400 0.95154 1.21427 0.96776 0.90816 0.99941 1.22137 0.99134 1.00279 0.96177 1.23352 0.92759 0.95721 0.92489 1.68319 1.13785 0.97428 1.33313 1.19477 0.97521 0.93660 0.91257 1.23910 0.95692 0.99622 1.01701 0.93481 0.78094 0.91986 0.91323 0.90441 0.88817 0.91645 0.91405 0.75310 0.81414 0.83525 0.83690 0.83873 0.81722 0.91433 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.52 16 9 N -0.71 -17.64 5.31 -52.55 -0.28 -17.92 16 10 C 0.17 3.33 4.57 -67.03 -0.31 3.02 16 11 C -0.15 -2.43 7.39 -25.92 -0.19 -2.62 16 12 C -0.12 -1.88 3.62 -89.81 -0.33 -2.21 16 13 C 0.13 1.91 5.50 -4.05 -0.02 1.89 16 14 N -0.71 -10.27 5.55 -61.24 -0.34 -10.61 16 15 C 0.56 8.84 7.81 -12.31 -0.10 8.75 16 16 O -0.50 -9.13 15.21 5.32 0.08 -9.04 16 17 C 0.14 2.01 6.81 -82.55 -0.56 1.45 16 18 N -0.44 -5.40 9.48 -9.55 -0.09 -5.49 16 19 C 0.08 0.69 11.12 -17.66 -0.20 0.49 16 20 C -0.12 -0.91 9.93 -38.94 -0.39 -1.29 16 21 C -0.08 -0.79 5.75 -106.79 -0.61 -1.41 16 22 C -0.06 -0.40 9.94 -39.25 -0.39 -0.79 16 23 C -0.16 -0.91 10.03 -39.73 -0.40 -1.31 16 24 C 0.13 1.13 11.14 -17.39 -0.19 0.93 16 25 N -0.42 -5.54 8.49 -10.75 -0.09 -5.63 16 26 C 0.11 1.36 6.61 -84.62 -0.56 0.80 16 27 C -0.17 -2.92 7.44 -25.83 -0.19 -3.11 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.39 10.17 7.90 -40.82 -0.32 9.85 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 33 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 36 H 0.41 5.70 7.82 -40.82 -0.32 5.38 16 37 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 39 H 0.15 0.42 8.06 -52.49 -0.42 -0.01 16 40 H 0.14 0.34 8.06 -52.48 -0.42 -0.09 16 41 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -34.92 367.82 -9.81 -44.73 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -5.65 Total: 11.13 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -4.68 Total: -2.73 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -0.08 Total: -67.00 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.92 -9.81 -44.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091075770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.659 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds