Wall clock time and date at job start Tue Mar 31 2020 14:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00262 * 2 1 4 4 H 1.48500 * 109.47254 * 270.00917 * 3 2 1 5 5 H 1.48500 * 109.46755 * 30.00832 * 3 2 1 6 6 H 1.48501 * 109.47178 * 150.00192 * 3 2 1 7 7 C 1.38812 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99673 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00241 * 180.02562 * 9 7 2 11 11 C 1.53769 * 113.61661 * 154.99981 * 10 9 7 12 12 C 1.53781 * 87.08473 * 89.11553 * 11 10 9 13 13 C 1.53003 * 113.61687 * 139.97914 * 12 11 10 14 14 N 1.46490 * 109.47024 * 176.52896 * 13 12 11 15 15 C 1.34776 * 119.99918 * 179.97438 * 14 13 12 16 16 O 1.21548 * 120.00051 * 0.02562 * 15 14 13 17 17 C 1.47895 * 120.00377 * 179.97438 * 15 14 13 18 18 N 1.32139 * 120.03128 * 359.97438 * 17 15 14 19 19 C 1.31977 * 122.77354 * 180.02562 * 18 17 15 20 20 C 1.37785 * 121.72458 * 0.02562 * 19 18 17 21 21 C 1.40380 * 118.72807 * 359.97438 * 20 19 18 22 22 C 1.40643 * 122.27683 * 179.97438 * 21 20 19 23 23 C 1.36637 * 117.95137 * 180.02562 * 22 21 20 24 24 C 1.39401 * 119.92801 * 0.02562 * 23 22 21 25 25 N 1.31204 * 121.85250 * 359.97438 * 24 23 22 26 26 C 1.33259 * 121.22277 * 0.02562 * 25 24 23 27 27 C 1.53782 * 87.16819 * 25.39085 * 12 11 10 28 28 H 0.97004 * 119.99987 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00104 * 359.97438 * 9 7 2 30 30 H 1.08999 * 112.84598 * 23.79685 * 10 9 7 31 31 H 1.09004 * 113.61557 * 334.56389 * 11 10 9 32 32 H 1.09003 * 113.61572 * 203.66458 * 11 10 9 33 33 H 1.08994 * 113.61358 * 270.79863 * 12 11 10 34 34 H 1.09003 * 109.46518 * 56.53226 * 13 12 11 35 35 H 1.09001 * 109.46893 * 296.53704 * 13 12 11 36 36 H 0.96996 * 120.00589 * 0.02562 * 14 13 12 37 37 H 1.07999 * 119.14167 * 180.28497 * 19 18 17 38 38 H 1.08001 * 120.63274 * 180.02562 * 20 19 18 39 39 H 1.07997 * 121.02524 * 0.02581 * 22 21 20 40 40 H 1.08008 * 120.04091 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.07692 * 180.02562 * 24 23 22 42 42 H 1.08994 * 113.61377 * 89.16610 * 27 12 11 43 43 H 1.09006 * 113.61286 * 220.06035 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.2601 -4.8287 0.5949 12 6 0.7203 -5.0791 -0.8231 13 6 0.6194 -6.5616 -1.1877 14 7 0.0208 -6.6977 -2.5178 15 6 -0.1671 -7.9215 -3.0502 16 8 0.1597 -8.9123 -2.4266 17 6 -0.7719 -8.0591 -4.3928 18 7 -1.1288 -6.9825 -5.0708 19 6 -1.6732 -7.0423 -6.2716 20 6 -1.9072 -8.2449 -6.9019 21 6 -1.5536 -9.4325 -6.2422 22 6 -1.7594 -10.7001 -6.8156 23 6 -1.3825 -11.7980 -6.0948 24 6 -0.8142 -11.6393 -4.8319 25 7 -0.6246 -10.4541 -4.3019 26 6 -0.9699 -9.3434 -4.9521 27 6 1.9977 -4.4015 -1.3466 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 0.0002 30 1 3.0655 -3.5639 0.4048 31 1 0.4937 -4.5189 1.3055 32 1 1.8869 -5.6367 0.9724 33 1 -0.1912 -4.5251 -1.0474 34 1 -0.0035 -7.0744 -0.4548 35 1 1.6158 -7.0036 -1.1906 36 1 -0.2397 -5.9071 -3.0157 37 1 -1.9384 -6.1244 -6.7751 38 1 -2.3533 -8.2733 -7.8850 39 1 -2.2017 -10.8026 -7.7955 40 1 -1.5254 -12.7878 -6.5027 41 1 -0.5209 -12.5165 -4.2743 42 1 2.8265 -5.0924 -1.5010 43 1 1.8260 -3.7472 -2.2014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091075770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:28 Heat of formation + Delta-G solvation = 46.966183 kcal Electronic energy + Delta-G solvation = -25947.192758 eV Core-core repulsion = 22185.573301 eV Total energy + Delta-G solvation = -3761.619457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.35316 -40.69941 -39.76425 -38.96570 -36.00319 -34.95446 -34.73473 -32.54186 -32.14817 -31.53482 -28.84083 -26.47229 -26.42539 -25.65452 -25.11807 -24.38128 -22.97414 -21.75322 -20.13270 -19.58320 -19.33863 -18.71395 -18.56865 -17.31633 -16.98730 -16.68849 -16.63853 -15.97025 -15.78183 -15.67477 -15.48134 -15.31385 -15.08024 -14.67970 -14.54223 -14.23193 -14.01332 -13.80741 -13.64240 -13.28459 -13.14223 -12.93788 -12.91271 -12.62572 -12.16235 -12.06972 -11.83561 -11.62283 -11.49110 -11.29919 -11.01750 -10.91972 -10.80174 -10.38789 -10.20313 -10.09251 -9.48574 -8.99602 -7.94471 -5.22990 -1.12955 -0.35012 0.62952 1.47987 1.49630 1.58115 1.61610 2.02312 2.15828 2.56341 3.02785 3.04296 3.19574 3.37520 3.41510 3.63784 3.70293 3.72718 3.79393 3.87513 3.93902 4.14403 4.22536 4.27891 4.32351 4.40506 4.46955 4.56609 4.63331 4.72211 4.75592 4.92656 4.94369 4.98267 5.10328 5.11426 5.27575 5.31856 5.35168 5.48285 5.54567 5.61111 5.66032 6.28904 6.39052 6.63298 6.91787 7.16865 7.33681 8.10763 8.33508 9.28877 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022545 B = 0.002201 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.688426 B =12716.994075 C =13673.818261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.146 3.854 11 C -0.132 4.132 12 C -0.104 4.104 13 C 0.141 3.859 14 N -0.705 5.705 15 C 0.558 3.442 16 O -0.537 6.537 17 C 0.095 3.905 18 N -0.454 5.454 19 C 0.052 3.948 20 C -0.088 4.088 21 C -0.106 4.106 22 C -0.051 4.051 23 C -0.152 4.152 24 C 0.129 3.871 25 N -0.485 5.485 26 C 0.084 3.916 27 C -0.154 4.154 28 H 0.251 0.749 29 H 0.374 0.626 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.413 0.587 37 H 0.197 0.803 38 H 0.196 0.804 39 H 0.191 0.809 40 H 0.186 0.814 41 H 0.184 0.816 42 H 0.090 0.910 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 -26.083 -18.917 32.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.036 3.964 11 C -0.171 4.171 12 C -0.122 4.122 13 C 0.018 3.982 14 N -0.356 5.356 15 C 0.343 3.657 16 O -0.412 6.412 17 C -0.056 4.056 18 N -0.167 5.167 19 C -0.095 4.095 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.076 4.076 23 C -0.173 4.173 24 C -0.044 4.044 25 N -0.193 5.193 26 C -0.040 4.040 27 C -0.195 4.195 28 H 0.060 0.940 29 H 0.206 0.794 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.249 0.751 37 H 0.213 0.787 38 H 0.213 0.787 39 H 0.208 0.792 40 H 0.204 0.796 41 H 0.201 0.799 42 H 0.109 0.891 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.641 -25.564 -17.252 31.188 hybrid contribution -0.646 0.791 -1.047 1.462 sum -5.286 -24.773 -18.299 31.249 Atomic orbital electron populations 1.69821 1.06591 1.26050 1.59531 1.25579 0.96420 1.01130 1.03794 0.85125 0.77706 0.79454 0.77382 1.21459 1.22260 1.19404 1.19683 0.91544 0.85167 1.40998 0.90510 1.42315 1.05326 1.00584 1.87559 1.21402 0.95139 0.84894 0.94958 1.23336 0.99966 0.98692 0.95096 1.22494 0.98368 0.93441 0.97929 1.21373 0.98253 0.95873 0.82722 1.45914 1.62204 1.08099 1.19427 1.17991 0.79126 0.83620 0.85003 1.90800 1.50947 1.37977 1.61512 1.21239 1.00532 0.88594 0.95274 1.67270 1.08215 1.31472 1.09772 1.23230 0.96143 1.00361 0.89784 1.22955 0.95554 0.90461 1.01863 1.19374 0.99995 0.97744 0.94214 1.21987 0.95122 0.89210 1.01280 1.22543 0.97677 1.02359 0.94717 1.23932 0.91498 0.95056 0.93918 1.68248 1.16754 0.98844 1.35494 1.19633 0.98328 0.93137 0.92892 1.23746 0.97224 0.99234 0.99254 0.94036 0.79400 0.91937 0.92207 0.87437 0.90330 0.91627 0.91118 0.75115 0.78660 0.78682 0.79185 0.79629 0.79888 0.89125 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 3 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.24 -13.60 9.97 84.03 0.84 -12.77 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.72 -36.78 5.31 -320.18 -1.70 -38.48 16 10 C 0.15 5.84 4.57 45.57 0.21 6.04 16 11 C -0.13 -4.29 7.39 31.12 0.23 -4.06 16 12 C -0.10 -3.31 3.62 -10.27 -0.04 -3.35 16 13 C 0.14 4.18 5.50 86.38 0.47 4.65 16 14 N -0.70 -21.61 5.55 -465.93 -2.58 -24.20 16 15 C 0.56 18.81 7.81 86.80 0.68 19.49 16 16 O -0.54 -20.89 15.21 -3.87 -0.06 -20.94 16 17 C 0.09 2.79 6.81 42.45 0.29 3.08 16 18 N -0.45 -11.44 9.48 -184.13 -1.75 -13.19 16 19 C 0.05 0.85 11.12 84.56 0.94 1.79 16 20 C -0.09 -1.00 9.93 22.68 0.23 -0.78 16 21 C -0.11 -1.74 5.75 -21.27 -0.12 -1.86 16 22 C -0.05 -0.42 9.94 22.48 0.22 -0.20 16 23 C -0.15 -1.25 10.03 22.18 0.22 -1.02 16 24 C 0.13 2.10 11.14 85.07 0.95 3.05 16 25 N -0.48 -13.19 8.49 -187.91 -1.60 -14.78 16 26 C 0.08 2.21 6.61 40.63 0.27 2.48 16 27 C -0.15 -5.35 7.44 31.18 0.23 -5.11 16 28 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.37 20.48 7.90 -92.71 -0.73 19.75 16 30 H 0.06 2.47 8.10 -2.39 -0.02 2.46 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.11 2.88 8.10 -2.39 -0.02 2.87 16 33 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 2.08 7.87 -2.39 -0.02 2.06 16 36 H 0.41 12.19 7.82 -92.71 -0.72 11.46 16 37 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.20 0.22 8.06 -2.91 -0.02 0.20 16 39 H 0.19 -0.19 8.06 -2.91 -0.02 -0.21 16 40 H 0.19 -0.11 8.06 -2.91 -0.02 -0.14 16 41 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.09 2.74 7.92 -2.39 -0.02 2.72 16 43 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -81.43 367.82 0.31 -81.12 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: -0.40 Total: 34.00 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 6.09 Total: 7.43 kcal Atomic # 7 Polarization: -142.88 SS G_CDS: -7.34 Total: -150.22 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.06 Total: -20.94 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -81.43 0.31 -81.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091075770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.082 kcal (2) G-P(sol) polarization free energy of solvation -81.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds