Wall clock time and date at job start Tue Mar 31 2020 15:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 120.00072 * 2 1 4 4 H 1.48499 * 109.47155 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47189 * 300.00593 * 3 2 1 6 6 H 1.48507 * 109.46758 * 60.00440 * 3 2 1 7 7 C 1.38806 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00429 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99749 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00379 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61720 * 154.99777 * 10 9 7 12 12 C 1.53775 * 87.08013 * 89.11546 * 11 10 9 13 13 C 1.53004 * 113.61235 * 139.97849 * 12 11 10 14 14 N 1.46504 * 109.46929 * 176.53237 * 13 12 11 15 15 C 1.34777 * 119.99858 * 180.02562 * 14 13 12 16 16 O 1.21553 * 119.99924 * 359.97438 * 15 14 13 17 17 C 1.47917 * 119.99952 * 180.27528 * 15 14 13 18 18 C 1.38941 * 119.84551 * 179.72371 * 17 15 14 19 19 C 1.40649 * 117.38867 * 179.97438 * 18 17 15 20 20 C 1.40257 * 122.04153 * 180.02562 * 19 18 17 21 21 C 1.36267 * 119.47488 * 179.97438 * 20 19 18 22 22 C 1.39323 * 120.87635 * 359.97438 * 21 20 19 23 23 C 1.36239 * 121.15453 * 0.02562 * 22 21 20 24 24 C 1.40327 * 119.67825 * 359.97438 * 23 22 21 25 25 N 1.33817 * 121.61693 * 180.02562 * 24 23 22 26 26 N 1.28441 * 121.69056 * 179.71654 * 25 24 23 27 27 C 1.53783 * 87.17311 * 25.39199 * 12 11 10 28 28 H 0.97005 * 119.99732 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99908 * 359.97438 * 9 7 2 30 30 H 1.08999 * 112.84652 * 23.80258 * 10 9 7 31 31 H 1.08997 * 113.61573 * 334.56598 * 11 10 9 32 32 H 1.09004 * 113.61337 * 203.66403 * 11 10 9 33 33 H 1.08996 * 113.61973 * 270.79511 * 12 11 10 34 34 H 1.08998 * 109.47202 * 56.53081 * 13 12 11 35 35 H 1.08997 * 109.47419 * 296.52979 * 13 12 11 36 36 H 0.97001 * 120.00416 * 359.97438 * 14 13 12 37 37 H 1.08004 * 121.30281 * 359.95529 * 18 17 15 38 38 H 1.08003 * 120.26592 * 359.95741 * 20 19 18 39 39 H 1.08000 * 119.56223 * 179.97438 * 21 20 19 40 40 H 1.07999 * 119.42949 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.15662 * 180.02562 * 23 22 21 42 42 H 1.09004 * 113.61586 * 89.15999 * 27 12 11 43 43 H 1.09001 * 113.61101 * 220.05673 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.2601 -4.8288 0.5950 12 6 0.7203 -5.0790 -0.8230 13 6 0.6195 -6.5616 -1.1876 14 7 0.0209 -6.6977 -2.5178 15 6 -0.1678 -7.9215 -3.0498 16 8 0.1589 -8.9123 -2.4260 17 6 -0.7666 -8.0588 -4.3954 18 6 -0.9544 -9.3218 -4.9431 19 6 -1.5283 -9.3922 -6.2252 20 6 -1.7622 -10.6158 -6.8697 21 6 -2.3217 -10.6231 -8.1121 22 6 -2.6643 -9.4322 -8.7490 23 6 -2.4507 -8.2266 -8.1514 24 6 -1.8765 -8.1773 -6.8720 25 7 -1.6501 -7.0149 -6.2490 26 7 -1.1295 -6.9683 -5.0757 27 6 1.9977 -4.4015 -1.3466 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3880 0.0002 30 1 3.0655 -3.5638 0.4049 31 1 0.4938 -4.5189 1.3055 32 1 1.8870 -5.6367 0.9725 33 1 -0.1912 -4.5251 -1.0474 34 1 -0.0033 -7.0744 -0.4547 35 1 1.6158 -7.0036 -1.1906 36 1 -0.2402 -5.9070 -3.0154 37 1 -0.6706 -10.2145 -4.4055 38 1 -1.5006 -11.5449 -6.3851 39 1 -2.5020 -11.5644 -8.6098 40 1 -3.1061 -9.4652 -9.7339 41 1 -2.7229 -7.3134 -8.6597 42 1 2.8266 -5.0924 -1.5009 43 1 1.8260 -3.7472 -2.2013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091172850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:25 Heat of formation + Delta-G solvation = 74.860699 kcal Electronic energy + Delta-G solvation = -25586.065031 eV Core-core repulsion = 21825.655171 eV Total energy + Delta-G solvation = -3760.409860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78422 -39.81398 -38.56052 -38.05298 -34.79907 -34.12255 -33.22284 -32.14568 -31.01080 -30.10718 -27.62696 -25.69266 -25.20198 -25.00904 -23.64194 -22.94240 -21.85970 -21.23329 -19.20177 -18.99500 -18.15920 -17.48178 -17.14672 -16.48496 -15.97515 -15.90400 -15.17318 -15.13439 -14.90680 -14.80471 -14.36346 -14.10840 -13.95594 -13.61236 -13.31330 -12.88324 -12.86386 -12.79091 -12.55545 -12.26146 -11.89718 -11.61433 -11.40456 -11.18970 -11.02326 -10.84051 -10.51195 -10.36170 -10.17949 -10.10791 -9.89198 -9.85078 -9.66979 -9.47138 -9.09239 -8.88727 -8.85525 -6.97249 -5.78135 -3.07118 -0.54011 -0.07013 1.20282 1.96549 2.84749 2.88293 3.43745 3.48279 3.49504 3.49814 3.51754 3.79205 4.01483 4.07628 4.23799 4.48872 4.54461 4.58085 4.63480 4.98861 5.07143 5.07461 5.14079 5.20491 5.27494 5.31500 5.47799 5.62230 5.64033 5.67635 5.71389 5.75211 5.86226 5.96256 6.09929 6.11737 6.23080 6.34898 6.40067 6.60765 6.78936 6.91589 7.07569 7.38667 7.71991 7.97832 8.15612 8.40964 9.51712 10.09452 10.43560 11.44316 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002120 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.605920 B =13204.567276 C =14434.761589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.168 3.832 11 C -0.147 4.147 12 C -0.121 4.121 13 C 0.129 3.871 14 N -0.699 5.699 15 C 0.574 3.426 16 O -0.538 6.538 17 C -0.005 4.005 18 C -0.029 4.029 19 C -0.074 4.074 20 C -0.095 4.095 21 C -0.097 4.097 22 C -0.092 4.092 23 C -0.078 4.078 24 C 0.071 3.929 25 N -0.197 5.197 26 N -0.188 5.188 27 C -0.169 4.169 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.415 0.585 37 H 0.167 0.833 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.067 0.933 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.327 -24.810 -16.397 30.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.139 4.139 13 C 0.006 3.994 14 N -0.349 5.349 15 C 0.357 3.643 16 O -0.415 6.415 17 C -0.139 4.139 18 C -0.060 4.060 19 C -0.083 4.083 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.099 4.099 24 C -0.057 4.057 25 N -0.053 5.053 26 N -0.046 5.046 27 C -0.210 4.210 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.251 0.749 37 H 0.184 0.816 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.157 0.843 41 H 0.165 0.835 42 H 0.086 0.914 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.015 -23.737 -15.862 28.986 hybrid contribution -0.021 -0.265 -0.347 0.437 sum -5.036 -24.002 -16.209 29.397 Atomic orbital electron populations 1.69673 1.05118 1.25648 1.57526 1.24769 0.95549 0.97794 1.02838 0.86101 0.78799 0.84016 0.77168 1.20513 1.21842 1.21870 1.19333 0.91144 0.83966 1.42807 0.90940 1.42181 1.05711 0.99436 1.87089 1.21087 0.95084 0.85594 0.92718 1.23440 1.00488 0.99710 0.95021 1.22729 0.99853 0.92688 0.98656 1.21608 0.98136 0.97539 0.82114 1.45955 1.61161 1.08044 1.19701 1.17472 0.78848 0.84209 0.83753 1.90797 1.51776 1.37564 1.61339 1.22592 1.02096 0.91569 0.97656 1.22593 0.91255 0.99211 0.92920 1.18826 0.99423 0.95151 0.94882 1.21054 0.98488 0.96413 0.95409 1.21147 0.96752 0.99018 0.94737 1.21135 0.97884 0.91831 1.00446 1.20850 0.97273 0.99583 0.92194 1.20486 0.98105 0.90392 0.96668 1.73928 1.07372 1.22508 1.01471 1.73267 1.03947 1.26413 1.00959 1.23926 0.95562 0.99670 1.01857 0.93496 0.78082 0.91936 0.91262 0.90443 0.88669 0.91395 0.91156 0.74881 0.81552 0.84097 0.84562 0.84346 0.83518 0.91425 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.71 -17.53 5.31 -52.55 -0.28 -17.81 16 10 C 0.17 3.29 4.57 -67.03 -0.31 2.98 16 11 C -0.15 -2.36 7.39 -25.92 -0.19 -2.55 16 12 C -0.12 -1.84 3.62 -89.81 -0.33 -2.17 16 13 C 0.13 1.76 5.50 -4.04 -0.02 1.74 16 14 N -0.70 -9.52 5.55 -61.22 -0.34 -9.86 16 15 C 0.57 8.08 7.80 -12.30 -0.10 7.98 16 16 O -0.54 -8.56 16.35 5.32 0.09 -8.47 16 17 C -0.01 -0.07 6.82 -82.89 -0.57 -0.63 16 18 C -0.03 -0.30 9.51 -38.41 -0.37 -0.66 16 19 C -0.07 -0.68 5.75 -106.80 -0.61 -1.29 16 20 C -0.09 -0.55 9.81 -39.53 -0.39 -0.94 16 21 C -0.10 -0.42 9.96 -39.89 -0.40 -0.82 16 22 C -0.09 -0.43 9.94 -39.90 -0.40 -0.83 16 23 C -0.08 -0.56 10.00 -39.52 -0.40 -0.96 16 24 C 0.07 0.73 6.69 -84.79 -0.57 0.16 16 25 N -0.20 -2.55 11.55 32.23 0.37 -2.18 16 26 N -0.19 -2.57 10.70 33.24 0.36 -2.21 16 27 C -0.17 -2.87 7.44 -25.83 -0.19 -3.07 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.39 10.13 7.90 -40.82 -0.32 9.81 16 30 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 33 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 36 H 0.41 5.56 7.80 -40.82 -0.32 5.24 16 37 H 0.17 1.37 7.69 -52.48 -0.40 0.97 16 38 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 39 H 0.14 0.21 8.06 -52.49 -0.42 -0.21 16 40 H 0.14 0.26 8.06 -52.49 -0.42 -0.17 16 41 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -33.37 369.96 -9.23 -42.60 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.63 Total: 10.70 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -5.07 Total: -8.37 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.83 Total: -59.43 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.37 -9.23 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091172850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.456 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds