Wall clock time and date at job start Tue Mar 31 2020 15:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 120.00072 * 2 1 4 4 H 1.48499 * 109.47155 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47189 * 300.00593 * 3 2 1 6 6 H 1.48507 * 109.46758 * 60.00440 * 3 2 1 7 7 C 1.38806 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00429 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99749 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00379 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61720 * 154.99777 * 10 9 7 12 12 C 1.53775 * 87.08013 * 89.11546 * 11 10 9 13 13 C 1.53004 * 113.61235 * 139.97849 * 12 11 10 14 14 N 1.46504 * 109.46929 * 176.53237 * 13 12 11 15 15 C 1.34777 * 119.99858 * 180.02562 * 14 13 12 16 16 O 1.21553 * 119.99924 * 359.97438 * 15 14 13 17 17 C 1.47917 * 119.99952 * 180.27528 * 15 14 13 18 18 C 1.38941 * 119.84551 * 179.72371 * 17 15 14 19 19 C 1.40649 * 117.38867 * 179.97438 * 18 17 15 20 20 C 1.40257 * 122.04153 * 180.02562 * 19 18 17 21 21 C 1.36267 * 119.47488 * 179.97438 * 20 19 18 22 22 C 1.39323 * 120.87635 * 359.97438 * 21 20 19 23 23 C 1.36239 * 121.15453 * 0.02562 * 22 21 20 24 24 C 1.40327 * 119.67825 * 359.97438 * 23 22 21 25 25 N 1.33817 * 121.61693 * 180.02562 * 24 23 22 26 26 N 1.28441 * 121.69056 * 179.71654 * 25 24 23 27 27 C 1.53783 * 87.17311 * 25.39199 * 12 11 10 28 28 H 0.97005 * 119.99732 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99908 * 359.97438 * 9 7 2 30 30 H 1.08999 * 112.84652 * 23.80258 * 10 9 7 31 31 H 1.08997 * 113.61573 * 334.56598 * 11 10 9 32 32 H 1.09004 * 113.61337 * 203.66403 * 11 10 9 33 33 H 1.08996 * 113.61973 * 270.79511 * 12 11 10 34 34 H 1.08998 * 109.47202 * 56.53081 * 13 12 11 35 35 H 1.08997 * 109.47419 * 296.52979 * 13 12 11 36 36 H 0.97001 * 120.00416 * 359.97438 * 14 13 12 37 37 H 1.08004 * 121.30281 * 359.95529 * 18 17 15 38 38 H 1.08003 * 120.26592 * 359.95741 * 20 19 18 39 39 H 1.08000 * 119.56223 * 179.97438 * 21 20 19 40 40 H 1.07999 * 119.42949 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.15662 * 180.02562 * 23 22 21 42 42 H 1.09004 * 113.61586 * 89.15999 * 27 12 11 43 43 H 1.09001 * 113.61101 * 220.05673 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.2601 -4.8288 0.5950 12 6 0.7203 -5.0790 -0.8230 13 6 0.6195 -6.5616 -1.1876 14 7 0.0209 -6.6977 -2.5178 15 6 -0.1678 -7.9215 -3.0498 16 8 0.1589 -8.9123 -2.4260 17 6 -0.7666 -8.0588 -4.3954 18 6 -0.9544 -9.3218 -4.9431 19 6 -1.5283 -9.3922 -6.2252 20 6 -1.7622 -10.6158 -6.8697 21 6 -2.3217 -10.6231 -8.1121 22 6 -2.6643 -9.4322 -8.7490 23 6 -2.4507 -8.2266 -8.1514 24 6 -1.8765 -8.1773 -6.8720 25 7 -1.6501 -7.0149 -6.2490 26 7 -1.1295 -6.9683 -5.0757 27 6 1.9977 -4.4015 -1.3466 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3880 0.0002 30 1 3.0655 -3.5638 0.4049 31 1 0.4938 -4.5189 1.3055 32 1 1.8870 -5.6367 0.9725 33 1 -0.1912 -4.5251 -1.0474 34 1 -0.0033 -7.0744 -0.4547 35 1 1.6158 -7.0036 -1.1906 36 1 -0.2402 -5.9070 -3.0154 37 1 -0.6706 -10.2145 -4.4055 38 1 -1.5006 -11.5449 -6.3851 39 1 -2.5020 -11.5644 -8.6098 40 1 -3.1061 -9.4652 -9.7339 41 1 -2.7229 -7.3134 -8.6597 42 1 2.8266 -5.0924 -1.5009 43 1 1.8260 -3.7472 -2.2013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091172850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:24 Heat of formation + Delta-G solvation = 52.014450 kcal Electronic energy + Delta-G solvation = -25587.055719 eV Core-core repulsion = 21825.655171 eV Total energy + Delta-G solvation = -3761.400548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.52077 -40.89389 -39.88171 -38.75129 -36.12460 -35.01986 -34.85437 -32.87200 -32.06016 -31.53422 -28.90727 -26.44007 -26.40028 -26.19093 -25.43268 -23.55910 -23.16606 -22.22041 -20.20742 -19.81046 -19.46192 -19.21409 -18.12265 -17.11857 -17.08074 -16.87533 -16.67446 -16.10602 -15.86043 -15.69214 -15.65731 -15.39524 -14.99608 -14.73488 -14.58593 -14.48009 -13.77566 -13.53554 -13.42052 -13.28433 -13.01760 -12.95551 -12.92512 -12.66823 -12.24321 -12.13233 -12.05496 -11.93526 -11.64489 -11.48830 -11.25143 -10.96694 -10.93676 -10.80135 -10.50512 -10.17973 -9.48069 -8.99804 -7.95283 -5.23659 -1.19078 -0.77925 0.62039 1.19508 1.47414 1.48201 1.58303 1.89359 2.04434 2.55685 2.66815 2.79892 3.16199 3.29255 3.37323 3.43319 3.69813 3.72411 3.77611 3.78349 3.89983 4.11518 4.13080 4.17729 4.32117 4.40092 4.41684 4.50673 4.66561 4.71415 4.73771 4.89872 4.92961 4.98614 5.04937 5.10472 5.20518 5.23678 5.31214 5.34922 5.44210 5.53379 5.66502 5.68755 6.28377 6.29727 6.90242 7.33116 7.33642 8.10761 8.32627 9.28257 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002120 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.605920 B =13204.567276 C =14434.761589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.293 1.293 7 C -0.241 4.241 8 H 0.078 0.922 9 N -0.720 5.720 10 C 0.144 3.856 11 C -0.130 4.130 12 C -0.106 4.106 13 C 0.138 3.862 14 N -0.700 5.700 15 C 0.578 3.422 16 O -0.560 6.560 17 C -0.033 4.033 18 C -0.023 4.023 19 C -0.085 4.085 20 C -0.098 4.098 21 C -0.084 4.084 22 C -0.069 4.069 23 C -0.103 4.103 24 C 0.052 3.948 25 N -0.230 5.230 26 N -0.218 5.218 27 C -0.156 4.156 28 H 0.251 0.749 29 H 0.374 0.626 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.414 0.586 37 H 0.184 0.816 38 H 0.169 0.831 39 H 0.177 0.823 40 H 0.176 0.824 41 H 0.153 0.847 42 H 0.093 0.907 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 -27.962 -18.266 33.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.373 4.373 8 H 0.096 0.904 9 N -0.358 5.358 10 C 0.034 3.966 11 C -0.169 4.169 12 C -0.125 4.125 13 C 0.015 3.985 14 N -0.350 5.350 15 C 0.362 3.638 16 O -0.439 6.439 17 C -0.167 4.167 18 C -0.053 4.053 19 C -0.093 4.093 20 C -0.117 4.117 21 C -0.103 4.103 22 C -0.090 4.090 23 C -0.124 4.124 24 C -0.075 4.075 25 N -0.085 5.085 26 N -0.075 5.075 27 C -0.196 4.196 28 H 0.059 0.941 29 H 0.206 0.794 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.250 0.750 37 H 0.201 0.799 38 H 0.186 0.814 39 H 0.195 0.805 40 H 0.193 0.807 41 H 0.170 0.830 42 H 0.112 0.888 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.670 -26.919 -17.732 32.571 hybrid contribution -0.160 0.506 0.036 0.532 sum -4.829 -26.413 -17.696 32.158 Atomic orbital electron populations 1.69828 1.06609 1.25965 1.59629 1.25584 0.96418 1.01164 1.03861 0.85064 0.78279 0.79804 0.76562 1.18949 1.22223 1.22051 1.19722 0.91564 0.85175 1.40795 0.90441 1.42331 1.05334 1.00645 1.87538 1.21430 0.95213 0.84922 0.95039 1.23328 0.99924 0.98661 0.94973 1.22511 0.98321 0.93628 0.98030 1.21490 0.98743 0.95925 0.82344 1.45964 1.61163 1.08172 1.19684 1.17636 0.78272 0.83760 0.84158 1.90764 1.52981 1.38020 1.62136 1.22429 1.04229 0.92626 0.97382 1.22826 0.90355 0.98693 0.93424 1.19101 0.99457 0.96161 0.94595 1.21441 0.98224 0.95948 0.96070 1.21692 0.94237 1.00497 0.93860 1.21649 0.95139 0.90802 1.01367 1.21088 0.98525 1.01339 0.91465 1.20917 0.98581 0.90201 0.97849 1.73786 1.08627 1.24497 1.01616 1.73133 1.05316 1.27339 1.01741 1.23768 0.97344 0.99330 0.99191 0.94065 0.79434 0.91884 0.92236 0.87117 0.90488 0.90826 0.90326 0.74964 0.79921 0.81352 0.80520 0.80686 0.82971 0.88817 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 7 C -0.24 -13.53 9.97 84.03 0.84 -12.70 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.72 -36.66 5.31 -320.18 -1.70 -38.36 16 10 C 0.14 5.64 4.57 45.58 0.21 5.85 16 11 C -0.13 -4.03 7.39 31.12 0.23 -3.80 16 12 C -0.11 -3.23 3.62 -10.27 -0.04 -3.27 16 13 C 0.14 3.66 5.50 86.38 0.47 4.14 16 14 N -0.70 -19.55 5.55 -465.89 -2.58 -22.13 16 15 C 0.58 16.61 7.80 86.81 0.68 17.28 16 16 O -0.56 -17.78 16.35 -3.88 -0.06 -17.85 16 17 C -0.03 -0.86 6.82 41.62 0.28 -0.58 16 18 C -0.02 -0.47 9.51 23.03 0.22 -0.25 16 19 C -0.08 -1.45 5.75 -21.28 -0.12 -1.57 16 20 C -0.10 -0.81 9.81 22.30 0.22 -0.59 16 21 C -0.08 -0.33 9.96 22.07 0.22 -0.11 16 22 C -0.07 -0.38 9.94 22.06 0.22 -0.16 16 23 C -0.10 -1.34 10.00 22.31 0.22 -1.12 16 24 C 0.05 1.08 6.69 40.27 0.27 1.35 16 25 N -0.23 -6.32 11.55 -51.93 -0.60 -6.92 16 26 N -0.22 -6.37 10.70 -48.75 -0.52 -6.89 16 27 C -0.16 -5.26 7.44 31.18 0.23 -5.03 16 28 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 29 H 0.37 20.43 7.90 -92.71 -0.73 19.70 16 30 H 0.06 2.44 8.10 -2.39 -0.02 2.42 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.11 2.74 8.10 -2.38 -0.02 2.72 16 33 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 2.00 7.87 -2.39 -0.02 1.98 16 36 H 0.41 11.75 7.80 -92.71 -0.72 11.03 16 37 H 0.18 2.85 7.69 -2.91 -0.02 2.83 16 38 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 39 H 0.18 -0.63 8.06 -2.91 -0.02 -0.66 16 40 H 0.18 -0.30 8.06 -2.91 -0.02 -0.32 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 42 H 0.09 2.69 7.92 -2.38 -0.02 2.67 16 43 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -75.99 369.96 1.06 -74.93 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -0.40 Total: 32.92 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 4.62 Total: -4.64 kcal Atomic # 7 Polarization: -129.15 SS G_CDS: -5.12 Total: -134.27 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.06 Total: -17.85 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -75.99 1.06 -74.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091172850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.945 kcal (2) G-P(sol) polarization free energy of solvation -75.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds