Wall clock time and date at job start Tue Mar 31 2020 15:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99940 * 2 1 4 4 H 1.48508 * 109.47189 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47245 * 300.00026 * 3 2 1 6 6 H 1.48497 * 109.47126 * 60.00323 * 3 2 1 7 7 C 1.38809 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00122 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.46490 * 120.00157 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61894 * 155.00200 * 10 9 7 12 12 C 1.53777 * 87.08326 * 89.11222 * 11 10 9 13 13 C 1.53004 * 113.61223 * 139.98294 * 12 11 10 14 14 N 1.46503 * 109.47077 * 176.52728 * 13 12 11 15 15 C 1.34774 * 119.99914 * 180.02562 * 14 13 12 16 16 O 1.21586 * 120.00382 * 0.02562 * 15 14 13 17 17 C 1.47514 * 119.99582 * 180.02562 * 15 14 13 18 18 C 1.38672 * 120.34049 * 359.97310 * 17 15 14 19 19 C 1.38988 * 120.63198 * 180.02562 * 18 17 15 20 20 C 1.36227 * 121.14020 * 359.97438 * 19 18 17 21 21 C 1.40688 * 120.17017 * 0.02562 * 20 19 18 22 22 N 1.33762 * 120.97508 * 179.97438 * 21 20 19 23 23 C 1.31330 * 119.72930 * 179.68438 * 22 21 20 24 24 C 1.39645 * 120.68394 * 0.58181 * 23 22 21 25 25 N 1.31451 * 120.64270 * 359.43307 * 24 23 22 26 26 C 1.33493 * 119.72012 * 0.26288 * 25 24 23 27 27 C 1.53779 * 87.17207 * 25.39202 * 12 11 10 28 28 H 0.97005 * 119.99968 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99671 * 359.97438 * 9 7 2 30 30 H 1.08998 * 112.85475 * 23.80029 * 10 9 7 31 31 H 1.09004 * 113.61101 * 334.56115 * 11 10 9 32 32 H 1.09004 * 113.61704 * 203.66553 * 11 10 9 33 33 H 1.09002 * 113.61749 * 270.80133 * 12 11 10 34 34 H 1.09008 * 109.47066 * 56.53309 * 13 12 11 35 35 H 1.08994 * 109.47419 * 296.52986 * 13 12 11 36 36 H 0.96999 * 119.99590 * 0.02562 * 14 13 12 37 37 H 1.07996 * 119.68136 * 0.02562 * 18 17 15 38 38 H 1.07998 * 119.43092 * 179.97438 * 19 18 17 39 39 H 1.08004 * 119.91339 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.66115 * 180.27201 * 23 22 21 41 41 H 1.08002 * 119.68268 * 179.72098 * 24 23 22 42 42 H 1.09004 * 113.60970 * 89.15864 * 27 12 11 43 43 H 1.08995 * 113.61712 * 220.05385 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.2601 -4.8288 0.5949 12 6 0.7203 -5.0791 -0.8231 13 6 0.6195 -6.5616 -1.1877 14 7 0.0208 -6.6977 -2.5179 15 6 -0.1680 -7.9216 -3.0498 16 8 0.1581 -8.9127 -2.4256 17 6 -0.7703 -8.0586 -4.3894 18 6 -1.1453 -6.9329 -5.1073 19 6 -1.7137 -7.0550 -6.3697 20 6 -1.9174 -8.2774 -6.9354 21 6 -1.5522 -9.4465 -6.2433 22 7 -1.7453 -10.6549 -6.7833 23 6 -1.3895 -11.7299 -6.1180 24 6 -0.8221 -11.6258 -4.8463 25 7 -0.6232 -10.4488 -4.2958 26 6 -0.9716 -9.3420 -4.9559 27 6 1.9977 -4.4014 -1.3467 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 3.0655 -3.5639 0.4048 31 1 0.4938 -4.5190 1.3055 32 1 1.8870 -5.6367 0.9724 33 1 -0.1912 -4.5251 -1.0475 34 1 -0.0034 -7.0745 -0.4548 35 1 1.6158 -7.0036 -1.1907 36 1 -0.2396 -5.9070 -3.0157 37 1 -0.9941 -5.9521 -4.6813 38 1 -1.9990 -6.1653 -6.9115 39 1 -2.3603 -8.3491 -7.9178 40 1 -1.5419 -12.7049 -6.5569 41 1 -0.5396 -12.5207 -4.3118 42 1 2.8265 -5.0923 -1.5010 43 1 1.8260 -3.7472 -2.2014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091299379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:08 Heat of formation + Delta-G solvation = 74.614478 kcal Electronic energy + Delta-G solvation = -25962.646620 eV Core-core repulsion = 22202.226083 eV Total energy + Delta-G solvation = -3760.420537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.80244 -39.74301 -38.52025 -37.52495 -35.05541 -34.60636 -33.24945 -31.34291 -31.19870 -30.07039 -27.40968 -25.79264 -25.07725 -24.50734 -24.04807 -23.33295 -21.67219 -20.62187 -19.18348 -18.75146 -18.25881 -17.49643 -17.16163 -16.63307 -15.83877 -15.65413 -15.39100 -15.13145 -14.83669 -14.62622 -14.42789 -14.11029 -14.07516 -13.51184 -13.26579 -12.91118 -12.60671 -12.36075 -12.22489 -12.15770 -11.95684 -11.90909 -11.86278 -11.39266 -11.06105 -10.88199 -10.50253 -10.23011 -10.14600 -9.88798 -9.72059 -9.51764 -9.40133 -9.21015 -9.09091 -8.92601 -8.84816 -7.02783 -5.83822 -3.12756 -0.37408 0.16645 1.33940 2.26282 3.04540 3.05497 3.39267 3.45517 3.47457 3.62225 3.74440 3.78230 3.93942 4.30074 4.38180 4.53217 4.56963 4.68159 4.82209 4.92082 5.05015 5.06846 5.20709 5.29864 5.39087 5.42902 5.50910 5.61181 5.69245 5.74261 5.78433 5.86301 5.95634 6.09831 6.17967 6.20397 6.35704 6.41612 6.57652 6.72146 6.88274 6.92267 7.02130 7.39962 7.51671 7.67035 8.22847 8.35465 9.46260 10.03799 10.37975 11.38642 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022409 B = 0.002197 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.219239 B =12744.428378 C =13708.711184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.147 4.147 12 C -0.120 4.120 13 C 0.133 3.867 14 N -0.722 5.722 15 C 0.549 3.451 16 O -0.504 6.504 17 C -0.096 4.096 18 C -0.059 4.059 19 C -0.105 4.105 20 C -0.061 4.061 21 C 0.070 3.930 22 N -0.426 5.426 23 C 0.075 3.925 24 C 0.075 3.925 25 N -0.388 5.388 26 C 0.112 3.888 27 C -0.168 4.168 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.399 0.601 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.176 0.824 41 H 0.176 0.824 42 H 0.068 0.932 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.339 -21.268 -13.822 25.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.139 4.139 13 C 0.010 3.990 14 N -0.375 5.375 15 C 0.334 3.666 16 O -0.378 6.378 17 C -0.101 4.101 18 C -0.080 4.080 19 C -0.125 4.125 20 C -0.080 4.080 21 C -0.054 4.054 22 N -0.140 5.140 23 C -0.101 4.101 24 C -0.101 4.101 25 N -0.101 5.101 26 C -0.014 4.014 27 C -0.210 4.210 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.234 0.766 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.193 0.807 41 H 0.193 0.807 42 H 0.086 0.914 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.976 -21.576 -13.315 25.664 hybrid contribution -0.110 1.186 -0.383 1.252 sum -4.087 -20.390 -13.698 24.901 Atomic orbital electron populations 1.69671 1.05126 1.25667 1.57598 1.24765 0.95554 0.97802 1.02830 0.86101 0.78828 0.83964 0.77193 1.20491 1.21851 1.21831 1.19339 0.91161 0.83956 1.42760 0.90932 1.42180 1.05683 0.99453 1.87123 1.21092 0.95113 0.85578 0.92725 1.23438 1.00499 0.99691 0.95086 1.22717 0.99568 0.92909 0.98685 1.21487 0.98064 0.97041 0.82369 1.46005 1.63838 1.07620 1.20011 1.17891 0.79633 0.83808 0.85232 1.90844 1.49016 1.36823 1.61166 1.19977 1.02629 0.91574 0.95943 1.21664 0.93918 0.98314 0.94073 1.20988 0.98208 0.98196 0.95090 1.21007 0.97060 0.89975 0.99994 1.19544 0.99578 0.93305 0.92991 1.68702 1.13744 0.97877 1.33705 1.24115 0.94380 0.98450 0.93131 1.24295 0.94856 0.97059 0.93857 1.69033 1.11154 0.97582 1.32302 1.19301 0.97192 0.93036 0.91831 1.23916 0.95709 0.99613 1.01719 0.93496 0.78123 0.91950 0.91298 0.90422 0.88898 0.91702 0.91451 0.76577 0.83869 0.83682 0.83815 0.80721 0.80701 0.91387 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.03 5.31 -52.56 -0.28 -17.31 16 10 C 0.17 3.19 4.57 -67.03 -0.31 2.88 16 11 C -0.15 -2.32 7.39 -25.92 -0.19 -2.51 16 12 C -0.12 -1.75 3.62 -89.81 -0.33 -2.07 16 13 C 0.13 1.79 5.50 -4.04 -0.02 1.77 16 14 N -0.72 -8.99 5.51 -61.35 -0.34 -9.33 16 15 C 0.55 7.86 7.77 -12.48 -0.10 7.76 16 16 O -0.50 -8.95 15.19 5.29 0.08 -8.86 16 17 C -0.10 -1.18 5.90 -104.62 -0.62 -1.79 16 18 C -0.06 -0.51 9.52 -39.14 -0.37 -0.89 16 19 C -0.10 -0.75 9.93 -40.03 -0.40 -1.14 16 20 C -0.06 -0.50 9.97 -39.38 -0.39 -0.90 16 21 C 0.07 0.77 6.59 -84.81 -0.56 0.21 16 22 N -0.43 -4.35 10.46 -10.82 -0.11 -4.46 16 23 C 0.07 0.57 11.21 -17.24 -0.19 0.38 16 24 C 0.07 0.67 11.22 -17.19 -0.19 0.48 16 25 N -0.39 -5.19 8.56 -10.59 -0.09 -5.28 16 26 C 0.11 1.44 6.60 -84.53 -0.56 0.88 16 27 C -0.17 -2.72 7.44 -25.83 -0.19 -2.92 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.38 9.81 7.90 -40.82 -0.32 9.48 16 30 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 33 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 35 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 36 H 0.40 4.11 6.50 -40.82 -0.27 3.84 16 37 H 0.14 0.93 6.37 -52.49 -0.33 0.60 16 38 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.18 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.18 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -35.14 365.34 -9.71 -44.85 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.51 Total: 9.69 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -4.66 Total: -5.00 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.10 Total: -63.07 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.08 Total: -8.86 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.14 -9.71 -44.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091299379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.461 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds