Wall clock time and date at job start Tue Mar 31 2020 15:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99940 * 2 1 4 4 H 1.48508 * 109.47189 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47245 * 300.00026 * 3 2 1 6 6 H 1.48497 * 109.47126 * 60.00323 * 3 2 1 7 7 C 1.38809 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00122 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.46490 * 120.00157 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61894 * 155.00200 * 10 9 7 12 12 C 1.53777 * 87.08326 * 89.11222 * 11 10 9 13 13 C 1.53004 * 113.61223 * 139.98294 * 12 11 10 14 14 N 1.46503 * 109.47077 * 176.52728 * 13 12 11 15 15 C 1.34774 * 119.99914 * 180.02562 * 14 13 12 16 16 O 1.21586 * 120.00382 * 0.02562 * 15 14 13 17 17 C 1.47514 * 119.99582 * 180.02562 * 15 14 13 18 18 C 1.38672 * 120.34049 * 359.97310 * 17 15 14 19 19 C 1.38988 * 120.63198 * 180.02562 * 18 17 15 20 20 C 1.36227 * 121.14020 * 359.97438 * 19 18 17 21 21 C 1.40688 * 120.17017 * 0.02562 * 20 19 18 22 22 N 1.33762 * 120.97508 * 179.97438 * 21 20 19 23 23 C 1.31330 * 119.72930 * 179.68438 * 22 21 20 24 24 C 1.39645 * 120.68394 * 0.58181 * 23 22 21 25 25 N 1.31451 * 120.64270 * 359.43307 * 24 23 22 26 26 C 1.33493 * 119.72012 * 0.26288 * 25 24 23 27 27 C 1.53779 * 87.17207 * 25.39202 * 12 11 10 28 28 H 0.97005 * 119.99968 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99671 * 359.97438 * 9 7 2 30 30 H 1.08998 * 112.85475 * 23.80029 * 10 9 7 31 31 H 1.09004 * 113.61101 * 334.56115 * 11 10 9 32 32 H 1.09004 * 113.61704 * 203.66553 * 11 10 9 33 33 H 1.09002 * 113.61749 * 270.80133 * 12 11 10 34 34 H 1.09008 * 109.47066 * 56.53309 * 13 12 11 35 35 H 1.08994 * 109.47419 * 296.52986 * 13 12 11 36 36 H 0.96999 * 119.99590 * 0.02562 * 14 13 12 37 37 H 1.07996 * 119.68136 * 0.02562 * 18 17 15 38 38 H 1.07998 * 119.43092 * 179.97438 * 19 18 17 39 39 H 1.08004 * 119.91339 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.66115 * 180.27201 * 23 22 21 41 41 H 1.08002 * 119.68268 * 179.72098 * 24 23 22 42 42 H 1.09004 * 113.60970 * 89.15864 * 27 12 11 43 43 H 1.08995 * 113.61712 * 220.05385 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.2601 -4.8288 0.5949 12 6 0.7203 -5.0791 -0.8231 13 6 0.6195 -6.5616 -1.1877 14 7 0.0208 -6.6977 -2.5179 15 6 -0.1680 -7.9216 -3.0498 16 8 0.1581 -8.9127 -2.4256 17 6 -0.7703 -8.0586 -4.3894 18 6 -1.1453 -6.9329 -5.1073 19 6 -1.7137 -7.0550 -6.3697 20 6 -1.9174 -8.2774 -6.9354 21 6 -1.5522 -9.4465 -6.2433 22 7 -1.7453 -10.6549 -6.7833 23 6 -1.3895 -11.7299 -6.1180 24 6 -0.8221 -11.6258 -4.8463 25 7 -0.6232 -10.4488 -4.2958 26 6 -0.9716 -9.3420 -4.9559 27 6 1.9977 -4.4014 -1.3467 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 3.0655 -3.5639 0.4048 31 1 0.4938 -4.5190 1.3055 32 1 1.8870 -5.6367 0.9724 33 1 -0.1912 -4.5251 -1.0475 34 1 -0.0034 -7.0745 -0.4548 35 1 1.6158 -7.0036 -1.1907 36 1 -0.2396 -5.9070 -3.0157 37 1 -0.9941 -5.9521 -4.6813 38 1 -1.9990 -6.1653 -6.9115 39 1 -2.3603 -8.3491 -7.9178 40 1 -1.5419 -12.7049 -6.5569 41 1 -0.5396 -12.5207 -4.3118 42 1 2.8265 -5.0923 -1.5010 43 1 1.8260 -3.7472 -2.2014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091299379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:07 Heat of formation + Delta-G solvation = 49.738086 kcal Electronic energy + Delta-G solvation = -25963.725341 eV Core-core repulsion = 22202.226083 eV Total energy + Delta-G solvation = -3761.499258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.51370 -40.82776 -39.81920 -38.26102 -36.06552 -35.67919 -34.96858 -32.39176 -31.86051 -31.67063 -28.68187 -26.50387 -26.42571 -25.79497 -25.12921 -24.50179 -22.96949 -21.56576 -20.06072 -19.67548 -19.43573 -19.19775 -18.09591 -17.52440 -16.89403 -16.63642 -16.56993 -16.05026 -15.99917 -15.71044 -15.66143 -15.22518 -15.05039 -14.71411 -14.64245 -14.48491 -13.73766 -13.29195 -13.22864 -12.98853 -12.93095 -12.89930 -12.80037 -12.73196 -12.62165 -12.60102 -12.12085 -12.04002 -11.55705 -11.47344 -11.13624 -10.91810 -10.79021 -10.12843 -10.05622 -9.98728 -9.65915 -8.98658 -7.94601 -5.22569 -1.07124 -0.49794 0.57426 1.48776 1.49387 1.59201 1.60217 2.06867 2.13244 2.56465 2.99872 3.02872 3.13965 3.23278 3.38217 3.62403 3.68327 3.73808 3.80420 3.88151 3.93620 4.10627 4.16187 4.25348 4.33135 4.36810 4.41112 4.55640 4.73733 4.75264 4.80172 4.93859 4.94070 5.00171 5.11075 5.12692 5.19438 5.28477 5.35979 5.49086 5.55324 5.58060 5.66968 6.24396 6.29373 6.51061 6.74289 7.20963 7.34529 8.11472 8.34052 9.28746 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022409 B = 0.002197 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.219239 B =12744.428378 C =13708.711184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.144 3.856 11 C -0.135 4.135 12 C -0.101 4.101 13 C 0.143 3.857 14 N -0.714 5.714 15 C 0.548 3.452 16 O -0.548 6.548 17 C -0.134 4.134 18 C -0.043 4.043 19 C -0.100 4.100 20 C -0.057 4.057 21 C 0.049 3.951 22 N -0.442 5.442 23 C 0.083 3.917 24 C 0.076 3.924 25 N -0.441 5.441 26 C 0.086 3.914 27 C -0.153 4.153 28 H 0.251 0.749 29 H 0.375 0.625 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.410 0.590 37 H 0.164 0.836 38 H 0.183 0.817 39 H 0.167 0.833 40 H 0.220 0.780 41 H 0.206 0.794 42 H 0.089 0.911 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 -21.978 -15.537 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.372 4.372 8 H 0.094 0.906 9 N -0.357 5.357 10 C 0.034 3.966 11 C -0.175 4.175 12 C -0.120 4.120 13 C 0.020 3.980 14 N -0.367 5.367 15 C 0.336 3.664 16 O -0.426 6.426 17 C -0.139 4.139 18 C -0.064 4.064 19 C -0.119 4.119 20 C -0.077 4.077 21 C -0.074 4.074 22 N -0.157 5.157 23 C -0.093 4.093 24 C -0.100 4.100 25 N -0.154 5.154 26 C -0.039 4.039 27 C -0.193 4.193 28 H 0.060 0.940 29 H 0.207 0.793 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.247 0.753 37 H 0.181 0.819 38 H 0.201 0.799 39 H 0.184 0.816 40 H 0.236 0.764 41 H 0.222 0.778 42 H 0.107 0.893 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.776 -22.284 -15.049 27.153 hybrid contribution -0.142 1.257 0.112 1.270 sum -3.918 -21.026 -14.936 26.087 Atomic orbital electron populations 1.69813 1.06488 1.25957 1.59609 1.25527 0.96390 1.00962 1.03857 0.85103 0.78256 0.79996 0.76578 1.19146 1.22032 1.22276 1.19695 0.91507 0.85170 1.40811 0.90612 1.42300 1.05342 1.00499 1.87574 1.21406 0.95013 0.84896 0.95243 1.23348 0.99997 0.98675 0.95436 1.22499 0.98518 0.93394 0.97606 1.21295 0.98076 0.95760 0.82906 1.45899 1.63372 1.07783 1.19647 1.18266 0.78878 0.83406 0.85887 1.90802 1.51126 1.38149 1.62522 1.19925 1.05493 0.92806 0.95626 1.21984 0.92017 0.98074 0.94305 1.21386 0.96961 0.99198 0.94346 1.21385 0.96078 0.89550 1.00645 1.19864 1.00140 0.94607 0.92777 1.68778 1.14497 0.98235 1.34140 1.24800 0.92471 0.99581 0.92416 1.24922 0.93611 0.96898 0.94535 1.68985 1.13273 0.99042 1.34124 1.19552 0.98247 0.93232 0.92850 1.23731 0.97189 0.99163 0.99227 0.94037 0.79290 0.92285 0.92317 0.87817 0.89706 0.92028 0.91539 0.75308 0.81865 0.79937 0.81554 0.76362 0.77767 0.89279 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.75 13.06 21.65 0.28 -57.46 16 2 C -0.08 -4.21 5.50 84.86 0.47 -3.75 16 3 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.24 -12.98 9.97 84.03 0.84 -12.15 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.72 -34.87 5.31 -320.19 -1.70 -36.57 16 10 C 0.14 5.41 4.57 45.58 0.21 5.62 16 11 C -0.14 -4.10 7.39 31.12 0.23 -3.87 16 12 C -0.10 -2.84 3.62 -10.27 -0.04 -2.88 16 13 C 0.14 3.71 5.50 86.38 0.47 4.19 16 14 N -0.71 -17.41 5.51 -466.28 -2.57 -19.98 16 15 C 0.55 15.95 7.77 86.69 0.67 16.63 16 16 O -0.55 -20.15 15.19 -3.99 -0.06 -20.21 16 17 C -0.13 -3.28 5.90 -19.87 -0.12 -3.40 16 18 C -0.04 -0.69 9.52 22.55 0.21 -0.48 16 19 C -0.10 -1.16 9.93 21.98 0.22 -0.94 16 20 C -0.06 -0.84 9.97 22.40 0.22 -0.62 16 21 C 0.05 1.05 6.59 40.28 0.27 1.32 16 22 N -0.44 -8.45 10.46 -188.15 -1.97 -10.42 16 23 C 0.08 1.13 11.21 85.11 0.95 2.09 16 24 C 0.08 1.32 11.22 85.09 0.95 2.27 16 25 N -0.44 -12.11 8.56 -187.41 -1.60 -13.71 16 26 C 0.09 2.25 6.60 40.59 0.27 2.51 16 27 C -0.15 -4.73 7.44 31.18 0.23 -4.50 16 28 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 29 H 0.37 19.42 7.90 -92.70 -0.73 18.69 16 30 H 0.06 2.23 8.10 -2.39 -0.02 2.22 16 31 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.10 2.63 8.10 -2.38 -0.02 2.61 16 33 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.07 1.78 7.87 -2.39 -0.02 1.76 16 36 H 0.41 8.00 6.50 -92.71 -0.60 7.40 16 37 H 0.16 1.78 6.37 -2.91 -0.02 1.76 16 38 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 39 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.22 0.77 8.06 -2.91 -0.02 0.75 16 41 H 0.21 1.93 8.06 -2.91 -0.02 1.90 16 42 H 0.09 2.42 7.92 -2.38 -0.02 2.40 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -79.00 365.34 0.20 -78.80 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -0.27 Total: 30.24 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 6.07 Total: 2.05 kcal Atomic # 7 Polarization: -130.59 SS G_CDS: -7.56 Total: -138.14 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.06 Total: -20.21 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -79.00 0.20 -78.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091299379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.535 kcal (2) G-P(sol) polarization free energy of solvation -79.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds