Wall clock time and date at job start Tue Mar 31 2020 14:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99799 * 2 1 4 4 H 1.48501 * 109.46736 * 239.99755 * 3 2 1 5 5 H 1.48499 * 109.46924 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46956 * 119.99984 * 3 2 1 7 7 C 1.38807 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00581 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00243 * 179.97438 * 9 7 2 11 11 C 1.53782 * 113.61419 * 155.00007 * 10 9 7 12 12 C 1.53778 * 87.07939 * 89.11905 * 11 10 9 13 13 C 1.52999 * 113.61593 * 139.98129 * 12 11 10 14 14 N 1.46503 * 109.47430 * 176.52835 * 13 12 11 15 15 C 1.34777 * 120.00251 * 180.02562 * 14 13 12 16 16 O 1.21544 * 119.99911 * 359.97438 * 15 14 13 17 17 C 1.47865 * 119.99979 * 180.02562 * 15 14 13 18 18 C 1.40622 * 119.75475 * 359.97438 * 17 15 14 19 19 C 1.35729 * 120.83193 * 179.97438 * 18 17 15 20 20 C 1.40700 * 120.08288 * 0.28593 * 19 18 17 21 21 N 1.33801 * 120.85422 * 180.17580 * 20 19 18 22 22 C 1.31324 * 119.76315 * 179.80029 * 21 20 19 23 23 C 1.39756 * 120.71304 * 359.76006 * 22 21 20 24 24 N 1.31279 * 120.67472 * 0.02562 * 23 22 21 25 25 C 1.33828 * 119.73252 * 359.97438 * 24 23 22 26 26 C 1.38408 * 119.75202 * 180.02562 * 17 15 14 27 27 C 1.53775 * 87.17643 * 25.39034 * 12 11 10 28 28 H 0.97004 * 120.00262 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99737 * 0.02562 * 9 7 2 30 30 H 1.09000 * 112.84755 * 23.80523 * 10 9 7 31 31 H 1.08998 * 113.61305 * 334.57195 * 11 10 9 32 32 H 1.09004 * 113.61554 * 203.66284 * 11 10 9 33 33 H 1.09003 * 113.61492 * 270.79915 * 12 11 10 34 34 H 1.08999 * 109.47293 * 56.52682 * 13 12 11 35 35 H 1.08996 * 109.47371 * 296.52675 * 13 12 11 36 36 H 0.97003 * 119.99684 * 359.97438 * 14 13 12 37 37 H 1.08002 * 119.58079 * 0.02562 * 18 17 15 38 38 H 1.08002 * 119.95423 * 179.97438 * 19 18 17 39 39 H 1.08001 * 119.64203 * 179.73360 * 22 21 20 40 40 H 1.08002 * 119.66567 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.25679 * 359.97009 * 26 17 15 42 42 H 1.09000 * 113.61791 * 89.15353 * 27 12 11 43 43 H 1.09005 * 113.61930 * 220.06726 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.2602 -4.8288 0.5960 12 6 0.7206 -5.0791 -0.8220 13 6 0.6197 -6.5616 -1.1866 14 7 0.0212 -6.6978 -2.5169 15 6 -0.1675 -7.9216 -3.0489 16 8 0.1592 -8.9124 -2.4252 17 6 -0.7711 -8.0590 -4.3917 18 6 -1.1467 -6.9093 -5.1090 19 6 -1.7020 -7.0100 -6.3434 20 6 -1.9147 -8.2756 -6.9200 21 7 -2.4577 -8.3927 -8.1372 22 6 -2.6430 -9.5846 -8.6565 23 6 -2.2743 -10.7347 -7.9534 24 7 -1.7359 -10.6460 -6.7594 25 6 -1.5368 -9.4425 -6.2088 26 6 -0.9631 -9.3184 -4.9329 27 6 1.9979 -4.4015 -1.3456 28 1 -0.4851 0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0002 30 1 3.0656 -3.5638 0.4060 31 1 0.4938 -4.5189 1.3064 32 1 1.8870 -5.6367 0.9735 33 1 -0.1910 -4.5251 -1.0465 34 1 -0.0031 -7.0744 -0.4538 35 1 1.6160 -7.0036 -1.1896 36 1 -0.2398 -5.9071 -3.0145 37 1 -0.9905 -5.9338 -4.6725 38 1 -1.9856 -6.1175 -6.8816 39 1 -3.0855 -9.6770 -9.6374 40 1 -2.4348 -11.7066 -8.3964 41 1 -0.6735 -10.1989 -4.3785 42 1 2.8268 -5.0923 -1.4998 43 1 1.8262 -3.7471 -2.2003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091357242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:02 Heat of formation + Delta-G solvation = 66.516726 kcal Electronic energy + Delta-G solvation = -25590.068233 eV Core-core repulsion = 21829.296551 eV Total energy + Delta-G solvation = -3760.771682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.85235 -40.09329 -38.64492 -37.34842 -35.26853 -34.81473 -33.28006 -31.54713 -31.02100 -30.16253 -27.76251 -25.75587 -25.10661 -24.93969 -23.74538 -22.75839 -21.80740 -21.41440 -19.24516 -18.77495 -18.26305 -17.50838 -17.36584 -16.72450 -16.01735 -15.68357 -15.31720 -15.08640 -14.94176 -14.67694 -14.41359 -14.20594 -14.15922 -13.73680 -13.37687 -12.95193 -12.88204 -12.40587 -12.23154 -12.16213 -12.11807 -12.10777 -11.96075 -11.44671 -11.07939 -10.86143 -10.54499 -10.33522 -10.22488 -9.90568 -9.72631 -9.59163 -9.54101 -9.48172 -9.15277 -8.98897 -8.91402 -7.03993 -5.84158 -3.13363 -0.37500 -0.03260 1.39175 1.95511 2.91073 2.97493 3.40082 3.44834 3.45568 3.53927 3.60366 3.67953 3.77908 4.27939 4.36828 4.44660 4.52689 4.57867 4.68671 4.91049 4.99819 5.01033 5.17132 5.25613 5.40761 5.41636 5.56369 5.57697 5.65442 5.65956 5.78036 5.82080 5.90081 6.05379 6.09948 6.17237 6.30072 6.33344 6.54111 6.69774 6.76777 6.84728 6.99709 7.22738 7.34223 7.65355 8.00581 8.35004 9.45694 10.02891 10.37056 11.38091 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.002097 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.816775 B =13348.488831 C =14553.606756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.167 3.833 11 C -0.147 4.147 12 C -0.121 4.121 13 C 0.130 3.870 14 N -0.715 5.715 15 C 0.555 3.445 16 O -0.535 6.535 17 C -0.111 4.111 18 C -0.073 4.073 19 C -0.084 4.084 20 C 0.093 3.907 21 N -0.427 5.427 22 C 0.084 3.916 23 C 0.073 3.927 24 N -0.417 5.417 25 C 0.068 3.932 26 C -0.015 4.015 27 C -0.169 4.169 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.403 0.597 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.177 0.823 40 H 0.178 0.822 41 H 0.155 0.845 42 H 0.068 0.932 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.249 -20.298 -15.575 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.139 4.139 13 C 0.007 3.993 14 N -0.366 5.366 15 C 0.341 3.659 16 O -0.413 6.413 17 C -0.117 4.117 18 C -0.093 4.093 19 C -0.104 4.104 20 C -0.031 4.031 21 N -0.141 5.141 22 C -0.092 4.092 23 C -0.103 4.103 24 N -0.130 5.130 25 C -0.055 4.055 26 C -0.035 4.035 27 C -0.210 4.210 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.238 0.762 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.194 0.806 40 H 0.195 0.805 41 H 0.173 0.827 42 H 0.086 0.914 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.808 -20.651 -14.879 25.903 hybrid contribution -0.139 1.231 -0.490 1.332 sum -4.947 -19.420 -15.369 25.255 Atomic orbital electron populations 1.69647 1.05127 1.25932 1.57354 1.24764 0.95549 0.97800 1.02732 0.86244 0.78524 0.83359 0.77907 1.21215 1.21677 1.21186 1.19244 0.91099 0.83971 1.43137 0.91038 1.42162 1.05665 0.99423 1.87143 1.21092 0.95142 0.85590 0.92694 1.23441 1.00513 0.99723 0.95021 1.22726 0.99665 0.92758 0.98794 1.21560 0.98200 0.97307 0.82206 1.45993 1.62863 1.07715 1.20014 1.18088 0.78841 0.83770 0.85213 1.90790 1.51087 1.37369 1.62082 1.20065 1.02203 0.93765 0.95619 1.21128 0.95684 0.98490 0.94028 1.20717 0.98634 0.95929 0.95092 1.19696 0.97162 0.94647 0.91632 1.68751 1.09469 1.26411 1.09429 1.24181 0.95497 0.88516 1.01001 1.24129 0.94311 1.00834 0.90993 1.68690 1.08898 1.24877 1.10585 1.19447 1.00372 0.89562 0.96138 1.21229 0.92618 0.98015 0.91666 1.23927 0.95642 0.99646 1.01806 0.93372 0.78117 0.91917 0.91258 0.90403 0.88824 0.91475 0.91225 0.76153 0.83938 0.83416 0.80552 0.80532 0.82709 0.91357 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -16.87 5.31 -52.55 -0.28 -17.15 16 10 C 0.17 3.14 4.57 -67.03 -0.31 2.83 16 11 C -0.15 -2.25 7.39 -25.92 -0.19 -2.44 16 12 C -0.12 -1.69 3.62 -89.81 -0.33 -2.02 16 13 C 0.13 1.64 5.50 -4.04 -0.02 1.61 16 14 N -0.71 -8.19 5.50 -61.24 -0.34 -8.53 16 15 C 0.55 7.08 7.77 -12.32 -0.10 6.99 16 16 O -0.54 -8.59 16.30 5.33 0.09 -8.50 16 17 C -0.11 -1.20 5.87 -105.00 -0.62 -1.82 16 18 C -0.07 -0.64 9.44 -39.58 -0.37 -1.01 16 19 C -0.08 -0.76 9.95 -39.55 -0.39 -1.15 16 20 C 0.09 0.96 6.59 -84.73 -0.56 0.40 16 21 N -0.43 -4.06 10.46 -10.74 -0.11 -4.17 16 22 C 0.08 0.53 11.21 -17.20 -0.19 0.33 16 23 C 0.07 0.47 11.21 -17.22 -0.19 0.28 16 24 N -0.42 -4.19 10.46 -10.81 -0.11 -4.31 16 25 C 0.07 0.75 6.58 -84.81 -0.56 0.19 16 26 C -0.01 -0.17 9.56 -38.69 -0.37 -0.54 16 27 C -0.17 -2.66 7.44 -25.83 -0.19 -2.86 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.38 9.72 7.90 -40.82 -0.32 9.40 16 30 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 33 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 36 H 0.40 3.84 6.46 -40.82 -0.26 3.58 16 37 H 0.14 0.94 6.35 -52.49 -0.33 0.60 16 38 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.18 0.38 8.06 -52.49 -0.42 -0.04 16 40 H 0.18 0.42 8.06 -52.49 -0.42 -0.01 16 41 H 0.16 1.77 7.61 -52.48 -0.40 1.37 16 42 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -33.68 367.33 -9.64 -43.32 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.49 Total: 9.90 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -4.64 Total: -6.33 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.12 Total: -60.76 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.68 -9.64 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091357242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.839 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds