Wall clock time and date at job start Tue Mar 31 2020 14:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99799 * 2 1 4 4 H 1.48501 * 109.46736 * 239.99755 * 3 2 1 5 5 H 1.48499 * 109.46924 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46956 * 119.99984 * 3 2 1 7 7 C 1.38807 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00581 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00243 * 179.97438 * 9 7 2 11 11 C 1.53782 * 113.61419 * 155.00007 * 10 9 7 12 12 C 1.53778 * 87.07939 * 89.11905 * 11 10 9 13 13 C 1.52999 * 113.61593 * 139.98129 * 12 11 10 14 14 N 1.46503 * 109.47430 * 176.52835 * 13 12 11 15 15 C 1.34777 * 120.00251 * 180.02562 * 14 13 12 16 16 O 1.21544 * 119.99911 * 359.97438 * 15 14 13 17 17 C 1.47865 * 119.99979 * 180.02562 * 15 14 13 18 18 C 1.40622 * 119.75475 * 359.97438 * 17 15 14 19 19 C 1.35729 * 120.83193 * 179.97438 * 18 17 15 20 20 C 1.40700 * 120.08288 * 0.28593 * 19 18 17 21 21 N 1.33801 * 120.85422 * 180.17580 * 20 19 18 22 22 C 1.31324 * 119.76315 * 179.80029 * 21 20 19 23 23 C 1.39756 * 120.71304 * 359.76006 * 22 21 20 24 24 N 1.31279 * 120.67472 * 0.02562 * 23 22 21 25 25 C 1.33828 * 119.73252 * 359.97438 * 24 23 22 26 26 C 1.38408 * 119.75202 * 180.02562 * 17 15 14 27 27 C 1.53775 * 87.17643 * 25.39034 * 12 11 10 28 28 H 0.97004 * 120.00262 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99737 * 0.02562 * 9 7 2 30 30 H 1.09000 * 112.84755 * 23.80523 * 10 9 7 31 31 H 1.08998 * 113.61305 * 334.57195 * 11 10 9 32 32 H 1.09004 * 113.61554 * 203.66284 * 11 10 9 33 33 H 1.09003 * 113.61492 * 270.79915 * 12 11 10 34 34 H 1.08999 * 109.47293 * 56.52682 * 13 12 11 35 35 H 1.08996 * 109.47371 * 296.52675 * 13 12 11 36 36 H 0.97003 * 119.99684 * 359.97438 * 14 13 12 37 37 H 1.08002 * 119.58079 * 0.02562 * 18 17 15 38 38 H 1.08002 * 119.95423 * 179.97438 * 19 18 17 39 39 H 1.08001 * 119.64203 * 179.73360 * 22 21 20 40 40 H 1.08002 * 119.66567 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.25679 * 359.97009 * 26 17 15 42 42 H 1.09000 * 113.61791 * 89.15353 * 27 12 11 43 43 H 1.09005 * 113.61930 * 220.06726 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.2602 -4.8288 0.5960 12 6 0.7206 -5.0791 -0.8220 13 6 0.6197 -6.5616 -1.1866 14 7 0.0212 -6.6978 -2.5169 15 6 -0.1675 -7.9216 -3.0489 16 8 0.1592 -8.9124 -2.4252 17 6 -0.7711 -8.0590 -4.3917 18 6 -1.1467 -6.9093 -5.1090 19 6 -1.7020 -7.0100 -6.3434 20 6 -1.9147 -8.2756 -6.9200 21 7 -2.4577 -8.3927 -8.1372 22 6 -2.6430 -9.5846 -8.6565 23 6 -2.2743 -10.7347 -7.9534 24 7 -1.7359 -10.6460 -6.7594 25 6 -1.5368 -9.4425 -6.2088 26 6 -0.9631 -9.3184 -4.9329 27 6 1.9979 -4.4015 -1.3456 28 1 -0.4851 0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0002 30 1 3.0656 -3.5638 0.4060 31 1 0.4938 -4.5189 1.3064 32 1 1.8870 -5.6367 0.9735 33 1 -0.1910 -4.5251 -1.0465 34 1 -0.0031 -7.0744 -0.4538 35 1 1.6160 -7.0036 -1.1896 36 1 -0.2398 -5.9071 -3.0145 37 1 -0.9905 -5.9338 -4.6725 38 1 -1.9856 -6.1175 -6.8816 39 1 -3.0855 -9.6770 -9.6374 40 1 -2.4348 -11.7066 -8.3964 41 1 -0.6735 -10.1989 -4.3785 42 1 2.8268 -5.0923 -1.4998 43 1 1.8262 -3.7471 -2.2003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091357242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:01 Heat of formation + Delta-G solvation = 42.846230 kcal Electronic energy + Delta-G solvation = -25591.094662 eV Core-core repulsion = 21829.296551 eV Total energy + Delta-G solvation = -3761.798111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.50966 -41.09217 -39.93875 -38.12328 -36.14029 -35.85418 -35.01031 -32.44458 -31.81988 -31.72475 -28.94548 -26.62239 -26.41595 -25.69547 -25.47037 -23.63004 -22.97875 -22.32794 -20.26125 -19.54734 -19.45764 -19.19304 -18.20378 -17.58108 -16.98140 -16.68490 -16.56991 -16.12502 -15.80482 -15.76001 -15.67998 -15.22600 -15.01536 -14.88108 -14.72622 -14.58482 -13.76242 -13.61603 -13.28457 -13.00119 -12.93207 -12.89310 -12.83782 -12.82459 -12.76550 -12.60708 -12.19203 -12.06306 -11.60430 -11.46428 -11.19527 -10.91243 -10.77159 -10.27519 -10.20229 -10.03582 -9.75328 -8.98051 -7.94026 -5.21933 -1.06364 -0.66987 0.67764 1.24097 1.49073 1.51124 1.57228 1.97594 2.13558 2.56892 2.90887 2.95338 3.08052 3.15569 3.38307 3.48275 3.72658 3.73411 3.78972 3.84689 3.89451 3.96180 4.07695 4.18458 4.34314 4.40698 4.41825 4.61625 4.68861 4.74195 4.77446 4.89392 4.95456 4.99075 5.01503 5.11439 5.13930 5.24999 5.36627 5.45493 5.48492 5.55264 5.67950 6.17108 6.29636 6.40282 6.62908 7.04047 7.34914 8.12454 8.34644 9.28829 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.002097 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.816775 B =13348.488831 C =14553.606756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.143 3.857 11 C -0.134 4.134 12 C -0.102 4.102 13 C 0.138 3.862 14 N -0.706 5.706 15 C 0.557 3.443 16 O -0.573 6.573 17 C -0.119 4.119 18 C -0.071 4.071 19 C -0.085 4.085 20 C 0.076 3.924 21 N -0.452 5.452 22 C 0.098 3.902 23 C 0.086 3.914 24 N -0.450 5.450 25 C 0.048 3.952 26 C -0.026 4.026 27 C -0.154 4.154 28 H 0.251 0.749 29 H 0.375 0.625 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.413 0.587 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.223 0.777 40 H 0.221 0.779 41 H 0.142 0.858 42 H 0.091 0.909 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 -21.259 -17.512 28.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.357 5.357 10 C 0.033 3.967 11 C -0.174 4.174 12 C -0.121 4.121 13 C 0.015 3.985 14 N -0.358 5.358 15 C 0.344 3.656 16 O -0.454 6.454 17 C -0.124 4.124 18 C -0.091 4.091 19 C -0.104 4.104 20 C -0.046 4.046 21 N -0.166 5.166 22 C -0.079 4.079 23 C -0.091 4.091 24 N -0.165 5.165 25 C -0.074 4.074 26 C -0.047 4.047 27 C -0.194 4.194 28 H 0.060 0.940 29 H 0.207 0.793 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.251 0.749 37 H 0.181 0.819 38 H 0.182 0.818 39 H 0.239 0.761 40 H 0.237 0.763 41 H 0.160 0.840 42 H 0.109 0.891 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.698 -21.614 -16.800 27.775 hybrid contribution -0.179 1.345 -0.035 1.357 sum -4.877 -20.269 -16.835 26.796 Atomic orbital electron populations 1.69795 1.06474 1.26094 1.59466 1.25526 0.96380 1.00966 1.03830 0.85245 0.77204 0.79376 0.78128 1.20436 1.22314 1.20573 1.19624 0.91498 0.85221 1.41077 0.90643 1.42284 1.05325 1.00494 1.87617 1.21429 0.95048 0.84929 0.95339 1.23345 0.99979 0.98651 0.95403 1.22504 0.98506 0.93479 0.97620 1.21399 0.98486 0.95855 0.82738 1.45897 1.62310 1.07891 1.19677 1.18333 0.78199 0.83388 0.85638 1.90765 1.52886 1.38557 1.63220 1.19926 1.03101 0.94447 0.94908 1.21258 0.95365 0.98555 0.93938 1.20952 0.98091 0.96228 0.95087 1.19901 0.97589 0.94860 0.92285 1.68825 1.10512 1.28098 1.09175 1.25015 0.93269 0.87445 1.02161 1.24951 0.91670 1.02923 0.89581 1.68711 1.10621 1.24671 1.12468 1.19482 1.01281 0.90411 0.96219 1.21191 0.93411 0.97811 0.92255 1.23744 0.97279 0.99215 0.99164 0.94044 0.79298 0.92301 0.92339 0.87651 0.89721 0.91435 0.90973 0.74942 0.81894 0.81761 0.76065 0.76273 0.84048 0.89077 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.70 13.06 21.65 0.28 -57.42 16 2 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 3 Si 0.97 45.21 29.55 68.60 2.03 47.23 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.24 -13.08 9.97 84.03 0.84 -12.24 16 8 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 9 N -0.72 -34.62 5.31 -320.16 -1.70 -36.32 16 10 C 0.14 5.25 4.57 45.58 0.21 5.46 16 11 C -0.13 -3.93 7.39 31.12 0.23 -3.70 16 12 C -0.10 -2.74 3.62 -10.27 -0.04 -2.77 16 13 C 0.14 3.28 5.50 86.38 0.47 3.76 16 14 N -0.71 -15.56 5.50 -465.96 -2.57 -18.12 16 15 C 0.56 14.24 7.77 86.79 0.67 14.91 16 16 O -0.57 -18.74 16.30 -3.85 -0.06 -18.80 16 17 C -0.12 -2.60 5.87 -20.11 -0.12 -2.72 16 18 C -0.07 -1.20 9.44 22.27 0.21 -0.99 16 19 C -0.08 -1.45 9.95 22.29 0.22 -1.23 16 20 C 0.08 1.53 6.59 40.32 0.27 1.80 16 21 N -0.45 -7.77 10.46 -187.89 -1.96 -9.73 16 22 C 0.10 0.92 11.21 85.14 0.95 1.87 16 23 C 0.09 0.87 11.21 85.14 0.95 1.83 16 24 N -0.45 -8.73 10.46 -188.11 -1.97 -10.70 16 25 C 0.05 1.06 6.58 40.25 0.27 1.32 16 26 C -0.03 -0.61 9.56 22.85 0.22 -0.39 16 27 C -0.15 -4.62 7.44 31.18 0.23 -4.39 16 28 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.37 19.29 7.90 -92.71 -0.73 18.56 16 30 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.11 2.52 8.10 -2.39 -0.02 2.50 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.73 7.87 -2.39 -0.02 1.71 16 36 H 0.41 7.38 6.46 -92.71 -0.60 6.78 16 37 H 0.16 1.92 6.35 -2.91 -0.02 1.91 16 38 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 39 H 0.22 -0.11 8.06 -2.91 -0.02 -0.14 16 40 H 0.22 0.11 8.06 -2.91 -0.02 0.09 16 41 H 0.14 3.55 7.61 -2.91 -0.02 3.53 16 42 H 0.09 2.36 7.92 -2.39 -0.02 2.34 16 43 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -74.91 367.33 -0.16 -75.07 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -0.27 Total: 29.99 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 6.06 Total: -1.20 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -7.91 Total: -132.29 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.06 Total: -18.80 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -74.91 -0.16 -75.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091357242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.917 kcal (2) G-P(sol) polarization free energy of solvation -74.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds