Wall clock time and date at job start Tue Mar 31 2020 15:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99651 * 2 1 4 4 H 1.48502 * 109.47206 * 270.00042 * 3 2 1 5 5 H 1.48497 * 109.47235 * 29.99778 * 3 2 1 6 6 H 1.48504 * 109.47275 * 150.00157 * 3 2 1 7 7 C 1.38817 * 120.00541 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00117 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99297 * 0.02562 * 7 2 1 10 10 C 1.50240 * 130.84673 * 0.02562 * 9 7 2 11 11 H 1.08997 * 115.85365 * 0.34530 * 10 9 7 12 12 C 1.55838 * 101.05207 * 234.66828 * 10 9 7 13 13 C 1.55868 * 102.97610 * 326.18281 * 12 10 9 14 14 C 1.50246 * 130.83155 * 180.02562 * 9 7 2 15 15 H 1.08998 * 115.86020 * 0.37151 * 14 9 7 16 16 C 1.55850 * 101.04778 * 234.69352 * 14 9 7 17 17 H 1.08997 * 110.62258 * 85.55472 * 16 14 9 18 18 N 1.46499 * 110.62699 * 208.57330 * 16 14 9 19 19 C 1.34778 * 119.99921 * 274.01984 * 18 16 14 20 20 O 1.21592 * 119.99735 * 359.97438 * 19 18 16 21 21 C 1.47527 * 119.99989 * 180.02562 * 19 18 16 22 22 C 1.39435 * 120.24622 * 359.72268 * 21 19 18 23 23 C 1.38285 * 120.27743 * 179.84594 * 22 21 19 24 24 C 1.37875 * 120.73337 * 0.40337 * 23 22 21 25 25 C 1.39680 * 120.10009 * 359.79937 * 24 23 22 26 26 N 1.35868 * 133.50760 * 179.97438 * 25 24 23 27 27 C 1.30093 * 109.53284 * 180.02562 * 26 25 24 28 28 N 1.36128 * 110.04957 * 359.97438 * 27 26 25 29 29 H 0.96998 * 126.30650 * 180.02562 * 28 27 26 30 30 C 1.37515 * 107.38088 * 0.02562 * 28 27 26 31 31 C 1.55840 * 101.04759 * 126.01493 * 10 9 7 32 32 H 0.97005 * 120.00668 * 359.97438 * 1 2 3 33 33 H 1.08998 * 110.62880 * 85.55391 * 12 10 9 34 34 H 1.08999 * 110.62692 * 208.56984 * 12 10 9 35 35 H 1.08994 * 111.10374 * 242.11586 * 13 12 10 36 36 H 1.08995 * 110.07231 * 119.15123 * 13 12 10 37 37 H 0.96993 * 120.00088 * 94.01797 * 18 16 14 38 38 H 1.07998 * 119.85960 * 0.02562 * 22 21 19 39 39 H 1.08008 * 119.63562 * 180.20252 * 23 22 21 40 40 H 1.07999 * 119.95468 * 179.82312 * 24 23 22 41 41 H 1.07996 * 124.97545 * 180.02562 * 27 26 25 42 42 H 1.09003 * 110.62178 * 151.43168 * 31 10 9 43 43 H 1.09001 * 110.63212 * 274.28715 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1499 -2.6707 -0.0005 11 1 -0.8013 -1.7968 -0.0073 12 6 -0.2779 -3.5950 1.2476 13 6 1.0661 -4.3844 1.2377 14 6 1.8189 -3.8071 0.0016 15 1 2.9014 -3.9342 0.0088 16 6 1.0829 -4.3801 -1.2470 17 1 1.6523 -4.1785 -2.1543 18 7 0.8472 -5.8177 -1.0926 19 6 1.8014 -6.6994 -1.4513 20 8 2.8577 -6.3015 -1.9035 21 6 1.5639 -8.1471 -1.2964 22 6 0.3563 -8.6088 -0.7740 23 6 0.1317 -9.9658 -0.6315 24 6 1.0966 -10.8816 -0.9939 25 6 2.3163 -10.4446 -1.5157 26 7 3.4316 -11.0872 -1.9508 27 6 4.3097 -10.2136 -2.3485 28 7 3.8170 -8.9538 -2.1959 29 1 4.2739 -8.1276 -2.4181 30 6 2.5521 -9.0685 -1.6685 31 6 -0.2731 -3.6107 -1.2373 32 1 -0.4851 0.8400 0.0004 33 1 -0.3881 -3.0017 2.1553 34 1 -1.1165 -4.2818 1.1325 35 1 0.8923 -5.4536 1.1167 36 1 1.6231 -4.1861 2.1534 37 1 0.0045 -6.1350 -0.7323 38 1 -0.4079 -7.9037 -0.4823 39 1 -0.8088 -10.3121 -0.2288 40 1 0.9089 -11.9384 -0.8745 41 1 5.2863 -10.4528 -2.7427 42 1 -1.1121 -4.2959 -1.1167 43 1 -0.3826 -3.0289 -2.1525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096219555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:21 Heat of formation + Delta-G solvation = 87.719598 kcal Electronic energy + Delta-G solvation = -27598.970086 eV Core-core repulsion = 23839.117830 eV Total energy + Delta-G solvation = -3759.852256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.34002 -40.04885 -38.45262 -37.15009 -34.06376 -33.24022 -32.37912 -30.51086 -29.64331 -29.20321 -28.97859 -27.50707 -24.57994 -23.88909 -22.62507 -22.18255 -21.39045 -20.59003 -19.54323 -18.76307 -18.12002 -17.62282 -16.98808 -16.70275 -15.69289 -15.55221 -15.34700 -14.97851 -14.79181 -14.34474 -14.14352 -14.01987 -13.81427 -13.69643 -12.40078 -12.36042 -12.27662 -12.19514 -11.95800 -11.79302 -11.52874 -11.10896 -10.95883 -10.93089 -10.88529 -10.86282 -10.45600 -10.25186 -10.12077 -9.90474 -9.74194 -9.47275 -9.29473 -8.97729 -8.69779 -8.62684 -8.34763 -6.95199 -5.76109 -3.14181 0.39347 1.27598 2.35500 2.83025 3.08975 3.31077 3.37709 3.42908 3.44322 3.75491 4.01521 4.40820 4.49708 4.66532 4.73450 5.06036 5.08826 5.15245 5.18391 5.35200 5.46894 5.47778 5.71446 5.74833 5.80511 5.88485 6.01005 6.04556 6.08148 6.14528 6.19125 6.24591 6.29011 6.48949 6.52138 6.55255 6.60998 6.74748 6.91729 6.95098 7.17603 7.22643 7.48278 7.60256 7.66525 7.77019 8.13028 8.34158 9.06929 9.69580 10.49580 11.33419 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024674 B = 0.003003 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.524255 B = 9322.632208 C =10062.072323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.211 4.211 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.153 3.847 11 H 0.154 0.846 12 C -0.135 4.135 13 C -0.131 4.131 14 C 0.129 3.871 15 H 0.083 0.917 16 C 0.128 3.872 17 H 0.085 0.915 18 N -0.702 5.702 19 C 0.556 3.444 20 O -0.554 6.554 21 C -0.124 4.124 22 C -0.064 4.064 23 C -0.138 4.138 24 C -0.040 4.040 25 C 0.032 3.968 26 N -0.498 5.498 27 C 0.260 3.740 28 N -0.584 5.584 29 H 0.436 0.564 30 C 0.100 3.900 31 C -0.140 4.140 32 H 0.254 0.746 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.396 0.604 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.218 0.782 42 H 0.055 0.945 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 -19.760 -2.237 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.747 3.253 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.339 4.339 8 H 0.097 0.903 9 N -0.310 5.310 10 C 0.046 3.954 11 H 0.171 0.829 12 C -0.175 4.175 13 C -0.170 4.170 14 C 0.020 3.980 15 H 0.101 0.899 16 C 0.022 3.978 17 H 0.103 0.897 18 N -0.352 5.352 19 C 0.343 3.657 20 O -0.434 6.434 21 C -0.130 4.130 22 C -0.084 4.084 23 C -0.158 4.158 24 C -0.059 4.059 25 C -0.086 4.086 26 N -0.218 5.218 27 C -0.028 4.028 28 N -0.195 5.195 29 H 0.278 0.722 30 C -0.014 4.014 31 C -0.179 4.179 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.231 0.769 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.234 0.766 42 H 0.074 0.926 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.521 -19.985 -2.545 20.153 hybrid contribution 0.336 1.844 0.046 1.875 sum 0.856 -18.141 -2.499 18.332 Atomic orbital electron populations 1.69427 1.04990 1.25017 1.57719 1.24693 0.95651 0.97502 1.02844 0.86032 0.78519 0.83144 0.77569 1.21645 1.21651 1.20763 1.19058 0.90364 0.81863 1.42579 0.90344 1.46487 1.01574 0.98775 1.84210 1.23753 0.87725 0.95317 0.88590 0.82881 1.23202 0.94999 0.98010 1.01279 1.23075 0.97688 0.97436 0.98836 1.23170 0.96191 0.86206 0.92470 0.89862 1.22926 0.98226 0.76300 1.00336 0.89729 1.46163 1.17937 1.07383 1.63679 1.18117 0.84205 0.85367 0.78028 1.90687 1.25816 1.80297 1.46590 1.19019 0.94566 0.92027 1.07395 1.21175 0.94837 0.96335 0.96101 1.20829 0.99810 0.92278 1.02911 1.20443 0.89817 1.00292 0.95370 1.19079 0.95494 0.88822 1.05181 1.70520 1.00921 1.31949 1.18364 1.25459 0.99962 0.78862 0.98497 1.43331 1.13362 1.10687 1.52148 0.72238 1.18618 0.86885 0.95612 1.00323 1.23471 0.93631 0.98453 1.02386 0.93534 0.92408 0.93704 0.93059 0.93085 0.76865 0.84760 0.84558 0.84906 0.76572 0.92620 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.81 10.46 55.49 0.58 -25.23 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.21 -5.74 10.59 -15.06 -0.16 -5.90 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.59 -14.44 2.97 -145.83 -0.43 -14.88 16 10 C 0.15 3.35 4.67 -62.81 -0.29 3.05 16 11 H 0.15 3.86 5.52 -51.93 -0.29 3.57 16 12 C -0.14 -2.54 6.53 -23.68 -0.15 -2.70 16 13 C -0.13 -2.37 6.36 -23.69 -0.15 -2.52 16 14 C 0.13 2.65 5.29 -62.80 -0.33 2.32 16 15 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 16 C 0.13 2.32 3.17 -64.86 -0.21 2.11 16 17 H 0.08 1.73 7.70 -51.93 -0.40 1.32 16 18 N -0.70 -10.10 3.61 -51.88 -0.19 -10.29 16 19 C 0.56 8.46 7.76 -12.47 -0.10 8.37 16 20 O -0.55 -9.99 15.02 5.28 0.08 -9.92 16 21 C -0.12 -1.60 5.88 -104.95 -0.62 -2.21 16 22 C -0.06 -0.63 9.53 -39.12 -0.37 -1.01 16 23 C -0.14 -1.19 9.99 -39.70 -0.40 -1.58 16 24 C -0.04 -0.40 10.09 -39.18 -0.40 -0.79 16 25 C 0.03 0.41 7.22 -84.71 -0.61 -0.20 16 26 N -0.50 -6.13 11.28 -12.04 -0.14 -6.26 16 27 C 0.26 2.48 12.97 -89.71 -1.16 1.31 16 28 N -0.58 -6.62 6.00 -11.56 -0.07 -6.69 16 29 H 0.44 4.73 7.72 -40.82 -0.32 4.41 16 30 C 0.10 1.31 6.88 -83.77 -0.58 0.74 16 31 C -0.14 -2.55 6.22 -23.66 -0.15 -2.70 16 32 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.04 0.70 7.85 -51.93 -0.41 0.29 16 35 H 0.05 0.80 6.55 -51.93 -0.34 0.46 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 4.60 6.05 -40.82 -0.25 4.36 16 38 H 0.13 1.01 6.39 -52.49 -0.34 0.67 16 39 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.22 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.06 0.84 7.38 -51.93 -0.38 0.45 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -32.80 346.93 -10.95 -43.76 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.22 Total: 9.62 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -5.77 Total: -2.13 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -0.25 Total: -63.34 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.80 -10.95 -43.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096219555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.475 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds