Wall clock time and date at job start Tue Mar 31 2020 15:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99651 * 2 1 4 4 H 1.48502 * 109.47206 * 270.00042 * 3 2 1 5 5 H 1.48497 * 109.47235 * 29.99778 * 3 2 1 6 6 H 1.48504 * 109.47275 * 150.00157 * 3 2 1 7 7 C 1.38817 * 120.00541 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00117 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99297 * 0.02562 * 7 2 1 10 10 C 1.50240 * 130.84673 * 0.02562 * 9 7 2 11 11 H 1.08997 * 115.85365 * 0.34530 * 10 9 7 12 12 C 1.55838 * 101.05207 * 234.66828 * 10 9 7 13 13 C 1.55868 * 102.97610 * 326.18281 * 12 10 9 14 14 C 1.50246 * 130.83155 * 180.02562 * 9 7 2 15 15 H 1.08998 * 115.86020 * 0.37151 * 14 9 7 16 16 C 1.55850 * 101.04778 * 234.69352 * 14 9 7 17 17 H 1.08997 * 110.62258 * 85.55472 * 16 14 9 18 18 N 1.46499 * 110.62699 * 208.57330 * 16 14 9 19 19 C 1.34778 * 119.99921 * 274.01984 * 18 16 14 20 20 O 1.21592 * 119.99735 * 359.97438 * 19 18 16 21 21 C 1.47527 * 119.99989 * 180.02562 * 19 18 16 22 22 C 1.39435 * 120.24622 * 359.72268 * 21 19 18 23 23 C 1.38285 * 120.27743 * 179.84594 * 22 21 19 24 24 C 1.37875 * 120.73337 * 0.40337 * 23 22 21 25 25 C 1.39680 * 120.10009 * 359.79937 * 24 23 22 26 26 N 1.35868 * 133.50760 * 179.97438 * 25 24 23 27 27 C 1.30093 * 109.53284 * 180.02562 * 26 25 24 28 28 N 1.36128 * 110.04957 * 359.97438 * 27 26 25 29 29 H 0.96998 * 126.30650 * 180.02562 * 28 27 26 30 30 C 1.37515 * 107.38088 * 0.02562 * 28 27 26 31 31 C 1.55840 * 101.04759 * 126.01493 * 10 9 7 32 32 H 0.97005 * 120.00668 * 359.97438 * 1 2 3 33 33 H 1.08998 * 110.62880 * 85.55391 * 12 10 9 34 34 H 1.08999 * 110.62692 * 208.56984 * 12 10 9 35 35 H 1.08994 * 111.10374 * 242.11586 * 13 12 10 36 36 H 1.08995 * 110.07231 * 119.15123 * 13 12 10 37 37 H 0.96993 * 120.00088 * 94.01797 * 18 16 14 38 38 H 1.07998 * 119.85960 * 0.02562 * 22 21 19 39 39 H 1.08008 * 119.63562 * 180.20252 * 23 22 21 40 40 H 1.07999 * 119.95468 * 179.82312 * 24 23 22 41 41 H 1.07996 * 124.97545 * 180.02562 * 27 26 25 42 42 H 1.09003 * 110.62178 * 151.43168 * 31 10 9 43 43 H 1.09001 * 110.63212 * 274.28715 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1499 -2.6707 -0.0005 11 1 -0.8013 -1.7968 -0.0073 12 6 -0.2779 -3.5950 1.2476 13 6 1.0661 -4.3844 1.2377 14 6 1.8189 -3.8071 0.0016 15 1 2.9014 -3.9342 0.0088 16 6 1.0829 -4.3801 -1.2470 17 1 1.6523 -4.1785 -2.1543 18 7 0.8472 -5.8177 -1.0926 19 6 1.8014 -6.6994 -1.4513 20 8 2.8577 -6.3015 -1.9035 21 6 1.5639 -8.1471 -1.2964 22 6 0.3563 -8.6088 -0.7740 23 6 0.1317 -9.9658 -0.6315 24 6 1.0966 -10.8816 -0.9939 25 6 2.3163 -10.4446 -1.5157 26 7 3.4316 -11.0872 -1.9508 27 6 4.3097 -10.2136 -2.3485 28 7 3.8170 -8.9538 -2.1959 29 1 4.2739 -8.1276 -2.4181 30 6 2.5521 -9.0685 -1.6685 31 6 -0.2731 -3.6107 -1.2373 32 1 -0.4851 0.8400 0.0004 33 1 -0.3881 -3.0017 2.1553 34 1 -1.1165 -4.2818 1.1325 35 1 0.8923 -5.4536 1.1167 36 1 1.6231 -4.1861 2.1534 37 1 0.0045 -6.1350 -0.7323 38 1 -0.4079 -7.9037 -0.4823 39 1 -0.8088 -10.3121 -0.2288 40 1 0.9089 -11.9384 -0.8745 41 1 5.2863 -10.4528 -2.7427 42 1 -1.1121 -4.2959 -1.1167 43 1 -0.3826 -3.0289 -2.1525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096219555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:20 Heat of formation + Delta-G solvation = 67.775925 kcal Electronic energy + Delta-G solvation = -27599.834909 eV Core-core repulsion = 23839.117830 eV Total energy + Delta-G solvation = -3760.717079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.14364 -41.43008 -39.81460 -37.99097 -35.52187 -34.28080 -34.02568 -31.48350 -30.97852 -30.58123 -30.32127 -29.01821 -26.23810 -25.04111 -23.53301 -23.02933 -22.74115 -21.82431 -21.15930 -20.22367 -19.26317 -18.74647 -18.43267 -17.60731 -16.93082 -16.79499 -16.62226 -16.27135 -16.05358 -15.83429 -15.26187 -15.23118 -15.09356 -14.51077 -14.11529 -13.93156 -13.50309 -13.21476 -13.02091 -12.92026 -12.91409 -12.78991 -12.72128 -12.62428 -12.37345 -12.00714 -11.91095 -11.74069 -11.53412 -11.39927 -11.18198 -11.07021 -10.83209 -10.81823 -10.07073 -9.43804 -9.21663 -8.86138 -7.80618 -5.19808 -0.42477 0.49525 1.45255 1.46128 1.49785 1.54360 2.06125 2.10724 2.13146 2.49131 2.89467 3.31136 3.33110 3.48998 3.64083 3.85382 3.96016 3.99405 4.09406 4.15244 4.31055 4.36330 4.38655 4.42895 4.48385 4.60379 4.70931 4.78505 4.80361 4.95573 4.99752 5.05493 5.14092 5.18741 5.26634 5.31999 5.40834 5.44696 5.46374 5.52977 5.73051 5.82824 5.87976 6.27319 6.39088 6.56928 6.81590 7.04695 7.20588 7.68099 8.54038 9.25984 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024674 B = 0.003003 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.524255 B = 9322.632208 C =10062.072323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.061 4.061 3 Si 0.974 3.026 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.226 4.226 8 H 0.069 0.931 9 N -0.619 5.619 10 C 0.137 3.863 11 H 0.121 0.879 12 C -0.124 4.124 13 C -0.116 4.116 14 C 0.119 3.881 15 H 0.061 0.939 16 C 0.148 3.852 17 H 0.055 0.945 18 N -0.688 5.688 19 C 0.555 3.445 20 O -0.590 6.590 21 C -0.149 4.149 22 C -0.052 4.052 23 C -0.128 4.128 24 C -0.042 4.042 25 C 0.008 3.992 26 N -0.527 5.527 27 C 0.268 3.732 28 N -0.591 5.591 29 H 0.434 0.566 30 C 0.072 3.928 31 C -0.124 4.124 32 H 0.249 0.751 33 H 0.036 0.964 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.038 0.962 37 H 0.414 0.586 38 H 0.164 0.836 39 H 0.177 0.823 40 H 0.152 0.848 41 H 0.260 0.740 42 H 0.101 0.899 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.877 -22.383 -1.695 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.254 4.254 3 Si 0.803 3.197 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.355 4.355 8 H 0.087 0.913 9 N -0.341 5.341 10 C 0.031 3.969 11 H 0.138 0.862 12 C -0.163 4.163 13 C -0.156 4.156 14 C 0.011 3.989 15 H 0.080 0.920 16 C 0.041 3.959 17 H 0.073 0.927 18 N -0.340 5.340 19 C 0.345 3.655 20 O -0.473 6.473 21 C -0.155 4.155 22 C -0.072 4.072 23 C -0.147 4.147 24 C -0.062 4.062 25 C -0.109 4.109 26 N -0.247 5.247 27 C -0.019 4.019 28 N -0.202 5.202 29 H 0.276 0.724 30 C -0.042 4.042 31 C -0.164 4.164 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.057 0.943 37 H 0.253 0.747 38 H 0.181 0.819 39 H 0.194 0.806 40 H 0.170 0.830 41 H 0.276 0.724 42 H 0.119 0.881 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.052 -22.666 -1.991 22.778 hybrid contribution 0.855 2.543 -0.141 2.687 sum -0.197 -20.123 -2.132 20.237 Atomic orbital electron populations 1.69652 1.05796 1.25083 1.58638 1.25380 0.96553 1.00066 1.03413 0.85137 0.77542 0.79712 0.77282 1.21636 1.21678 1.20259 1.19276 0.90422 0.83644 1.42145 0.91307 1.46744 1.03114 0.99371 1.84850 1.23690 0.85824 0.95632 0.91737 0.86218 1.23095 0.96796 0.97863 0.98548 1.22976 0.96689 0.99156 0.96752 1.23293 0.95663 0.84933 0.94994 0.92032 1.22330 0.97368 0.78489 0.97696 0.92662 1.45833 1.18780 1.05439 1.63943 1.18553 0.83499 0.86512 0.76963 1.90671 1.27406 1.81097 1.48088 1.18928 0.96289 0.90064 1.10252 1.21583 0.93910 0.97663 0.94015 1.21263 1.00719 0.91343 1.01423 1.20877 0.89165 1.01807 0.94307 1.19522 0.96581 0.88708 1.06104 1.70519 1.01626 1.32814 1.19790 1.26329 1.00866 0.77868 0.96867 1.43463 1.13260 1.11205 1.52296 0.72419 1.18963 0.87677 0.96229 1.01328 1.23302 0.95060 0.98259 0.99753 0.94089 0.94479 0.89148 0.89498 0.94262 0.74678 0.81850 0.80612 0.83025 0.72439 0.88103 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.15 10.46 21.65 0.23 -53.92 16 2 C -0.06 -3.43 5.50 84.86 0.47 -2.97 16 3 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.23 -12.75 10.59 84.04 0.89 -11.86 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 9 N -0.62 -31.04 2.97 -615.27 -1.83 -32.86 16 10 C 0.14 5.97 4.67 46.22 0.22 6.19 16 11 H 0.12 6.15 5.52 -2.39 -0.01 6.14 16 12 C -0.12 -4.37 6.53 32.57 0.21 -4.16 16 13 C -0.12 -4.00 6.36 32.56 0.21 -3.80 16 14 C 0.12 4.94 5.29 46.22 0.24 5.19 16 15 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 16 C 0.15 5.28 3.17 46.98 0.15 5.43 16 17 H 0.06 2.31 7.70 -2.39 -0.02 2.30 16 18 N -0.69 -18.13 3.61 -436.32 -1.58 -19.71 16 19 C 0.56 16.27 7.76 86.69 0.67 16.95 16 20 O -0.59 -21.63 15.02 -4.01 -0.06 -21.69 16 21 C -0.15 -3.55 5.88 -20.07 -0.12 -3.67 16 22 C -0.05 -0.81 9.53 22.57 0.22 -0.60 16 23 C -0.13 -1.62 9.99 22.19 0.22 -1.39 16 24 C -0.04 -0.72 10.09 22.53 0.23 -0.50 16 25 C 0.01 0.20 7.22 39.40 0.28 0.49 16 26 N -0.53 -12.40 11.28 -192.02 -2.17 -14.57 16 27 C 0.27 4.83 12.97 180.03 2.34 7.16 16 28 N -0.59 -13.26 6.00 -190.50 -1.14 -14.41 16 29 H 0.43 9.67 7.72 -92.71 -0.72 8.95 16 30 C 0.07 1.83 6.88 39.25 0.27 2.10 16 31 C -0.12 -4.36 6.22 32.58 0.20 -4.16 16 32 H 0.25 13.95 8.31 -92.70 -0.77 13.18 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 2.37 7.85 -2.39 -0.02 2.35 16 35 H 0.09 2.36 6.55 -2.39 -0.02 2.34 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.41 7.70 6.05 -92.71 -0.56 7.14 16 38 H 0.16 1.48 6.39 -2.91 -0.02 1.47 16 39 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 40 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 41 H 0.26 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.10 2.60 7.38 -2.39 -0.02 2.58 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -76.24 346.93 1.98 -74.26 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.20 Total: 24.50 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 6.70 Total: 10.40 kcal Atomic # 7 Polarization: -128.98 SS G_CDS: -6.49 Total: -135.47 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.06 Total: -21.69 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -76.24 1.98 -74.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096219555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.040 kcal (2) G-P(sol) polarization free energy of solvation -76.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds