Wall clock time and date at job start Tue Mar 31 2020 15:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00615 * 2 1 4 4 H 1.48497 * 109.47007 * 274.98011 * 3 2 1 5 5 H 1.48505 * 109.47056 * 34.97985 * 3 2 1 6 6 H 1.48499 * 109.47473 * 154.97557 * 3 2 1 7 7 C 1.38819 * 119.99431 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99968 * 185.74164 * 7 2 1 9 9 N 1.36939 * 120.00125 * 5.74278 * 7 2 1 10 10 C 1.50239 * 130.83593 * 351.00316 * 9 7 2 11 11 H 1.08999 * 115.85893 * 359.67972 * 10 9 7 12 12 C 1.56866 * 100.58251 * 234.63160 * 10 9 7 13 13 C 1.54844 * 103.35411 * 326.65633 * 12 10 9 14 14 C 1.50231 * 130.83718 * 171.34598 * 9 7 2 15 15 H 1.08994 * 115.86273 * 359.59824 * 14 9 7 16 16 C 1.55846 * 101.04852 * 233.92790 * 14 9 7 17 17 H 1.09001 * 110.62976 * 85.55128 * 16 14 9 18 18 N 1.46496 * 110.62904 * 208.57434 * 16 14 9 19 19 C 1.34776 * 119.99963 * 274.47230 * 18 16 14 20 20 O 1.21596 * 119.99954 * 359.97438 * 19 18 16 21 21 C 1.47570 * 120.00330 * 179.97438 * 19 18 16 22 22 C 1.41759 * 120.01317 * 359.72834 * 21 19 18 23 23 C 1.35631 * 119.54268 * 179.69837 * 22 21 19 24 24 C 1.41176 * 119.50420 * 0.60126 * 23 22 21 25 25 N 1.32412 * 132.11743 * 179.63661 * 24 23 22 26 26 C 1.33599 * 109.23018 * 180.02562 * 25 24 23 27 27 C 1.35001 * 108.65385 * 0.02562 * 26 25 24 28 28 N 1.37005 * 107.14610 * 359.97438 * 27 26 25 29 29 C 1.35923 * 132.42286 * 179.97438 * 28 27 26 30 30 C 1.55487 * 103.32765 * 326.97561 * 16 14 9 31 31 H 0.97006 * 119.99225 * 0.02562 * 1 2 3 32 32 H 1.08997 * 110.42712 * 208.30840 * 12 10 9 33 33 H 1.08998 * 111.04070 * 85.29671 * 12 10 9 34 34 H 1.09000 * 110.62881 * 241.78198 * 13 12 10 35 35 H 1.08998 * 110.76059 * 118.83445 * 13 12 10 36 36 H 0.97002 * 120.00389 * 94.46975 * 18 16 14 37 37 H 1.08000 * 120.22928 * 359.97438 * 22 21 19 38 38 H 1.08001 * 120.24881 * 180.26704 * 23 22 21 39 39 H 1.07995 * 125.67342 * 179.97438 * 26 25 24 40 40 H 1.07995 * 126.42583 * 180.02562 * 27 26 25 41 41 H 1.08005 * 119.75030 * 0.05195 * 29 28 27 42 42 H 1.08997 * 110.60856 * 241.58560 * 30 16 14 43 43 H 1.08998 * 110.75631 * 118.48410 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3926 2.1070 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4119 0.5922 7 6 2.0102 -1.2023 0.0005 8 1 3.0861 -1.2047 0.0941 9 7 1.3305 -2.3852 -0.1176 10 6 -0.1422 -2.6799 -0.0819 11 1 -0.7956 -1.8202 0.0668 12 6 -0.1917 -3.7643 1.0505 13 6 1.1501 -4.5185 0.8822 14 6 1.8284 -3.7887 -0.3160 15 1 2.9100 -3.9040 -0.3858 16 6 1.0239 -4.2150 -1.5809 17 1 1.5391 -3.8995 -2.4881 18 7 0.8029 -5.6632 -1.5882 19 6 1.7422 -6.4856 -2.0960 20 8 2.7728 -6.0254 -2.5486 21 6 1.5200 -7.9444 -2.1029 22 6 0.3211 -8.4816 -1.5702 23 6 0.1241 -9.8234 -1.5870 24 6 1.1219 -10.6660 -2.1233 25 7 1.1954 -11.9812 -2.2579 26 6 2.3586 -12.3004 -2.8323 27 6 3.0480 -11.1646 -3.0716 28 7 2.2767 -10.1228 -2.6280 29 6 2.4712 -8.7776 -2.6170 30 6 -0.3240 -3.4566 -1.4207 31 1 -0.4849 0.8402 -0.0004 32 1 -1.0335 -4.4389 0.8946 33 1 -0.2504 -3.2999 2.0348 34 1 0.9739 -5.5673 0.6432 35 1 1.7595 -4.4282 1.7815 36 1 -0.0193 -6.0302 -1.2275 37 1 -0.4321 -7.8266 -1.1579 38 1 -0.7869 -10.2446 -1.1881 39 1 2.6922 -13.3007 -3.0656 40 1 4.0241 -11.0910 -3.5279 41 1 3.3853 -8.3650 -3.0179 42 1 -1.1535 -4.1598 -1.3470 43 1 -0.4785 -2.7643 -2.2483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096314974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:31 Heat of formation + Delta-G solvation = 112.225440 kcal Electronic energy + Delta-G solvation = -27301.782759 eV Core-core repulsion = 23542.993155 eV Total energy + Delta-G solvation = -3758.789603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.12105 -40.23878 -38.68264 -37.03530 -34.41111 -33.75517 -32.39534 -30.88318 -29.33010 -29.08575 -29.01983 -27.61182 -24.80010 -23.96789 -23.41184 -22.09496 -21.51194 -20.88300 -19.61317 -18.70580 -18.43874 -17.50787 -16.92279 -16.66094 -16.25568 -15.87313 -15.11344 -14.93467 -14.85398 -14.79138 -14.23705 -14.07214 -13.91322 -13.79677 -13.35709 -12.40517 -12.37462 -12.09085 -11.98507 -11.82253 -11.56007 -11.39534 -11.12132 -10.98041 -10.93920 -10.86921 -10.46838 -10.25930 -10.12135 -10.03570 -9.87317 -9.45945 -9.36494 -9.20762 -8.91990 -8.61830 -8.21560 -6.94815 -5.79097 -3.16071 0.27042 0.75506 2.14161 2.32072 2.91239 3.25211 3.37562 3.43241 3.44307 3.44643 3.86972 4.21344 4.33802 4.41687 4.53519 4.59310 4.97790 5.03570 5.12239 5.15035 5.33044 5.45175 5.49583 5.61996 5.70522 5.73984 5.77966 5.90450 6.00683 6.04829 6.05482 6.22579 6.25806 6.26362 6.46883 6.52519 6.58175 6.63914 6.74965 6.88849 6.93123 7.19163 7.49877 7.50611 7.59968 7.74308 8.11054 8.26772 9.05364 9.68191 10.49193 11.31305 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.032007 B = 0.002651 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.610340 B =10560.342492 C =11019.140437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.213 4.213 8 H 0.079 0.921 9 N -0.589 5.589 10 C 0.155 3.845 11 H 0.152 0.848 12 C -0.139 4.139 13 C -0.131 4.131 14 C 0.128 3.872 15 H 0.085 0.915 16 C 0.127 3.873 17 H 0.086 0.914 18 N -0.700 5.700 19 C 0.564 3.436 20 O -0.538 6.538 21 C -0.154 4.154 22 C -0.078 4.078 23 C -0.083 4.083 24 C 0.230 3.770 25 N -0.494 5.494 26 C 0.032 3.968 27 C -0.095 4.095 28 N -0.367 5.367 29 C 0.129 3.871 30 C -0.136 4.136 31 H 0.254 0.746 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.395 0.605 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.183 0.817 40 H 0.186 0.814 41 H 0.179 0.821 42 H 0.055 0.945 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.387 -19.935 -4.165 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.341 4.341 8 H 0.097 0.903 9 N -0.310 5.310 10 C 0.048 3.952 11 H 0.169 0.831 12 C -0.179 4.179 13 C -0.170 4.170 14 C 0.019 3.981 15 H 0.103 0.897 16 C 0.022 3.978 17 H 0.104 0.896 18 N -0.350 5.350 19 C 0.349 3.651 20 O -0.417 6.417 21 C -0.160 4.160 22 C -0.102 4.102 23 C -0.103 4.103 24 C -0.014 4.014 25 N -0.213 5.213 26 C -0.118 4.118 27 C -0.225 4.225 28 N -0.039 5.039 29 C 0.003 3.997 30 C -0.176 4.176 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.231 0.769 37 H 0.165 0.835 38 H 0.174 0.826 39 H 0.200 0.800 40 H 0.203 0.797 41 H 0.196 0.804 42 H 0.073 0.927 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.154 -19.820 -4.250 20.271 hybrid contribution 0.822 1.047 -0.121 1.337 sum 0.668 -18.772 -4.371 19.286 Atomic orbital electron populations 1.69484 1.05048 1.25101 1.57197 1.24754 0.95651 0.97544 1.02540 0.86041 0.78650 0.83243 0.77524 1.21608 1.21759 1.20667 1.19052 0.90900 0.81888 1.42225 0.90342 1.46473 1.01798 1.00346 1.82375 1.23893 0.87820 0.94880 0.88618 0.83098 1.23245 0.95084 0.98398 1.01168 1.22907 0.97740 0.97385 0.98987 1.23192 0.96243 0.86513 0.92122 0.89674 1.22847 0.98377 0.75991 1.00581 0.89631 1.46121 1.20198 1.07998 1.60695 1.17630 0.84097 0.84757 0.78626 1.90814 1.26708 1.77039 1.47104 1.19526 0.96015 0.94659 1.05794 1.21124 0.96320 0.94989 0.97765 1.20167 0.98066 0.91469 1.00603 1.21177 0.88369 0.89975 1.01831 1.70750 1.20961 1.08597 1.21035 1.22563 0.90881 0.98708 0.99635 1.22803 1.01037 0.85673 1.12989 1.42846 1.16060 1.05916 1.39068 1.21729 1.00752 0.79962 0.97217 1.23333 0.93610 0.98376 1.02258 0.93518 0.93680 0.92614 0.93176 0.93003 0.76882 0.83535 0.82550 0.80004 0.79721 0.80368 0.92692 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.49 10.53 55.49 0.58 -24.91 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.63 29.56 -169.99 -5.02 16.61 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.21 -5.73 10.57 -15.06 -0.16 -5.89 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.59 -14.17 2.97 -145.21 -0.43 -14.60 16 10 C 0.15 3.31 4.71 -62.23 -0.29 3.02 16 11 H 0.15 3.74 5.60 -51.93 -0.29 3.45 16 12 C -0.14 -2.53 6.50 -23.67 -0.15 -2.68 16 13 C -0.13 -2.28 6.34 -24.24 -0.15 -2.44 16 14 C 0.13 2.57 5.29 -62.81 -0.33 2.24 16 15 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 16 C 0.13 2.24 3.10 -65.09 -0.20 2.03 16 17 H 0.09 1.69 7.72 -51.93 -0.40 1.29 16 18 N -0.70 -9.40 3.61 -52.09 -0.19 -9.59 16 19 C 0.56 7.89 7.75 -12.45 -0.10 7.79 16 20 O -0.54 -9.48 16.01 5.28 0.08 -9.40 16 21 C -0.15 -1.70 5.84 -105.37 -0.61 -2.32 16 22 C -0.08 -0.69 9.53 -39.17 -0.37 -1.06 16 23 C -0.08 -0.77 10.09 -39.40 -0.40 -1.17 16 24 C 0.23 2.66 7.81 -155.93 -1.22 1.45 16 25 N -0.49 -6.03 11.31 -12.72 -0.14 -6.17 16 26 C 0.03 0.30 11.82 -17.93 -0.21 0.09 16 27 C -0.10 -0.84 11.75 -16.39 -0.19 -1.03 16 28 N -0.37 -3.92 2.93 -62.30 -0.18 -4.11 16 29 C 0.13 1.37 10.49 -16.36 -0.17 1.20 16 30 C -0.14 -2.43 6.25 -23.89 -0.15 -2.58 16 31 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.04 0.68 7.88 -51.93 -0.41 0.27 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.74 6.57 -51.93 -0.34 0.40 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.40 4.18 6.10 -40.82 -0.25 3.93 16 37 H 0.15 0.92 6.44 -52.49 -0.34 0.58 16 38 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.18 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.18 1.73 7.56 -52.48 -0.40 1.34 16 42 H 0.05 0.80 7.41 -51.93 -0.38 0.41 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 349.75 15.07 5.27 5.27 Total: -1.00 -32.33 349.75 -10.16 -42.50 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.32 Total: 6.08 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -4.81 Total: -1.68 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.36 Total: -59.38 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.33 -10.16 -42.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096314974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.721 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds