Wall clock time and date at job start Tue Mar 31 2020 15:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00615 * 2 1 4 4 H 1.48497 * 109.47007 * 274.98011 * 3 2 1 5 5 H 1.48505 * 109.47056 * 34.97985 * 3 2 1 6 6 H 1.48499 * 109.47473 * 154.97557 * 3 2 1 7 7 C 1.38819 * 119.99431 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99968 * 185.74164 * 7 2 1 9 9 N 1.36939 * 120.00125 * 5.74278 * 7 2 1 10 10 C 1.50239 * 130.83593 * 351.00316 * 9 7 2 11 11 H 1.08999 * 115.85893 * 359.67972 * 10 9 7 12 12 C 1.56866 * 100.58251 * 234.63160 * 10 9 7 13 13 C 1.54844 * 103.35411 * 326.65633 * 12 10 9 14 14 C 1.50231 * 130.83718 * 171.34598 * 9 7 2 15 15 H 1.08994 * 115.86273 * 359.59824 * 14 9 7 16 16 C 1.55846 * 101.04852 * 233.92790 * 14 9 7 17 17 H 1.09001 * 110.62976 * 85.55128 * 16 14 9 18 18 N 1.46496 * 110.62904 * 208.57434 * 16 14 9 19 19 C 1.34776 * 119.99963 * 274.47230 * 18 16 14 20 20 O 1.21596 * 119.99954 * 359.97438 * 19 18 16 21 21 C 1.47570 * 120.00330 * 179.97438 * 19 18 16 22 22 C 1.41759 * 120.01317 * 359.72834 * 21 19 18 23 23 C 1.35631 * 119.54268 * 179.69837 * 22 21 19 24 24 C 1.41176 * 119.50420 * 0.60126 * 23 22 21 25 25 N 1.32412 * 132.11743 * 179.63661 * 24 23 22 26 26 C 1.33599 * 109.23018 * 180.02562 * 25 24 23 27 27 C 1.35001 * 108.65385 * 0.02562 * 26 25 24 28 28 N 1.37005 * 107.14610 * 359.97438 * 27 26 25 29 29 C 1.35923 * 132.42286 * 179.97438 * 28 27 26 30 30 C 1.55487 * 103.32765 * 326.97561 * 16 14 9 31 31 H 0.97006 * 119.99225 * 0.02562 * 1 2 3 32 32 H 1.08997 * 110.42712 * 208.30840 * 12 10 9 33 33 H 1.08998 * 111.04070 * 85.29671 * 12 10 9 34 34 H 1.09000 * 110.62881 * 241.78198 * 13 12 10 35 35 H 1.08998 * 110.76059 * 118.83445 * 13 12 10 36 36 H 0.97002 * 120.00389 * 94.46975 * 18 16 14 37 37 H 1.08000 * 120.22928 * 359.97438 * 22 21 19 38 38 H 1.08001 * 120.24881 * 180.26704 * 23 22 21 39 39 H 1.07995 * 125.67342 * 179.97438 * 26 25 24 40 40 H 1.07995 * 126.42583 * 180.02562 * 27 26 25 41 41 H 1.08005 * 119.75030 * 0.05195 * 29 28 27 42 42 H 1.08997 * 110.60856 * 241.58560 * 30 16 14 43 43 H 1.08998 * 110.75631 * 118.48410 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3926 2.1070 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4119 0.5922 7 6 2.0102 -1.2023 0.0005 8 1 3.0861 -1.2047 0.0941 9 7 1.3305 -2.3852 -0.1176 10 6 -0.1422 -2.6799 -0.0819 11 1 -0.7956 -1.8202 0.0668 12 6 -0.1917 -3.7643 1.0505 13 6 1.1501 -4.5185 0.8822 14 6 1.8284 -3.7887 -0.3160 15 1 2.9100 -3.9040 -0.3858 16 6 1.0239 -4.2150 -1.5809 17 1 1.5391 -3.8995 -2.4881 18 7 0.8029 -5.6632 -1.5882 19 6 1.7422 -6.4856 -2.0960 20 8 2.7728 -6.0254 -2.5486 21 6 1.5200 -7.9444 -2.1029 22 6 0.3211 -8.4816 -1.5702 23 6 0.1241 -9.8234 -1.5870 24 6 1.1219 -10.6660 -2.1233 25 7 1.1954 -11.9812 -2.2579 26 6 2.3586 -12.3004 -2.8323 27 6 3.0480 -11.1646 -3.0716 28 7 2.2767 -10.1228 -2.6280 29 6 2.4712 -8.7776 -2.6170 30 6 -0.3240 -3.4566 -1.4207 31 1 -0.4849 0.8402 -0.0004 32 1 -1.0335 -4.4389 0.8946 33 1 -0.2504 -3.2999 2.0348 34 1 0.9739 -5.5673 0.6432 35 1 1.7595 -4.4282 1.7815 36 1 -0.0193 -6.0302 -1.2275 37 1 -0.4321 -7.8266 -1.1579 38 1 -0.7869 -10.2446 -1.1881 39 1 2.6922 -13.3007 -3.0656 40 1 4.0241 -11.0910 -3.5279 41 1 3.3853 -8.3650 -3.0179 42 1 -1.1535 -4.1598 -1.3470 43 1 -0.4785 -2.7643 -2.2483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096314974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:30 Heat of formation + Delta-G solvation = 93.664537 kcal Electronic energy + Delta-G solvation = -27302.587620 eV Core-core repulsion = 23542.993155 eV Total energy + Delta-G solvation = -3759.594464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.85843 -41.53233 -40.01168 -37.91673 -35.63430 -34.74892 -34.15670 -31.78550 -30.95670 -30.60635 -29.79214 -29.09871 -26.29789 -25.23364 -24.16482 -22.97695 -22.71377 -22.09105 -21.23973 -20.16815 -19.37016 -18.89778 -18.17107 -17.50407 -17.10549 -17.02747 -16.76054 -16.42471 -15.88317 -15.79758 -15.55178 -15.33938 -14.99102 -14.68724 -14.11899 -14.04236 -13.92704 -13.45202 -13.21640 -12.93309 -12.82106 -12.78426 -12.76887 -12.58429 -12.35022 -12.10878 -11.98094 -11.88014 -11.55620 -11.26556 -11.22956 -11.06329 -10.97287 -10.76555 -10.12192 -9.87188 -8.94185 -8.82493 -7.81065 -5.18646 -0.52426 0.03872 1.36588 1.46255 1.47921 1.50821 1.55690 2.05805 2.16153 2.50476 2.57899 3.19353 3.33157 3.45701 3.52357 3.59802 3.71113 3.89641 3.95325 4.11150 4.17086 4.33352 4.40814 4.44460 4.48342 4.51298 4.62582 4.72895 4.82603 4.84982 4.93001 4.99492 5.02005 5.10085 5.18395 5.21390 5.34787 5.37637 5.47974 5.56182 5.60564 5.75290 5.90057 5.90972 6.28784 6.54005 6.77595 7.06003 7.18764 7.69828 8.56868 9.26628 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.032007 B = 0.002651 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.610340 B =10560.342492 C =11019.140437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.060 4.060 3 Si 0.971 3.029 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.225 4.225 8 H 0.069 0.931 9 N -0.619 5.619 10 C 0.138 3.862 11 H 0.117 0.883 12 C -0.128 4.128 13 C -0.117 4.117 14 C 0.118 3.882 15 H 0.065 0.935 16 C 0.148 3.852 17 H 0.057 0.943 18 N -0.686 5.686 19 C 0.568 3.432 20 O -0.579 6.579 21 C -0.158 4.158 22 C -0.071 4.071 23 C -0.084 4.084 24 C 0.207 3.793 25 N -0.525 5.525 26 C 0.021 3.979 27 C -0.095 4.095 28 N -0.374 5.374 29 C 0.128 3.872 30 C -0.121 4.121 31 H 0.249 0.751 32 H 0.090 0.910 33 H 0.035 0.965 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.415 0.585 37 H 0.178 0.822 38 H 0.179 0.821 39 H 0.210 0.790 40 H 0.216 0.784 41 H 0.182 0.818 42 H 0.101 0.899 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 -22.414 -4.132 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.253 4.253 3 Si 0.801 3.199 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.354 4.354 8 H 0.087 0.913 9 N -0.341 5.341 10 C 0.032 3.968 11 H 0.134 0.866 12 C -0.167 4.167 13 C -0.156 4.156 14 C 0.010 3.990 15 H 0.083 0.917 16 C 0.041 3.959 17 H 0.076 0.924 18 N -0.338 5.338 19 C 0.356 3.644 20 O -0.460 6.460 21 C -0.165 4.165 22 C -0.095 4.095 23 C -0.104 4.104 24 C -0.037 4.037 25 N -0.245 5.245 26 C -0.128 4.128 27 C -0.224 4.224 28 N -0.046 5.046 29 C 0.003 3.997 30 C -0.161 4.161 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.255 0.745 37 H 0.196 0.804 38 H 0.197 0.803 39 H 0.227 0.773 40 H 0.232 0.768 41 H 0.199 0.801 42 H 0.119 0.881 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.023 -22.370 -4.210 22.785 hybrid contribution 1.169 1.696 -0.173 2.067 sum 0.146 -20.674 -4.383 21.134 Atomic orbital electron populations 1.69703 1.05827 1.25093 1.58307 1.25416 0.96525 1.00060 1.03288 0.85159 0.77742 0.79928 0.77111 1.21776 1.21880 1.20107 1.19263 0.90927 0.83681 1.41574 0.91285 1.46728 1.03343 1.00932 1.83076 1.23830 0.85885 0.95281 0.91775 0.86601 1.23139 0.96983 0.97912 0.98656 1.22814 0.96751 0.98949 0.97097 1.23333 0.95826 0.85222 0.94604 0.91657 1.22240 0.97395 0.78319 0.97939 0.92449 1.45782 1.21082 1.06056 1.60835 1.17975 0.83187 0.85887 0.77386 1.90807 1.28472 1.78012 1.48728 1.19263 0.97435 0.92550 1.07236 1.21340 0.95814 0.95211 0.97101 1.20483 0.98359 0.91407 1.00150 1.21673 0.89256 0.90277 1.02488 1.70732 1.22409 1.09214 1.22169 1.23137 0.90230 1.00274 0.99151 1.23427 1.01882 0.85025 1.12059 1.42989 1.16331 1.05999 1.39277 1.21807 1.00885 0.80177 0.96858 1.23160 0.95136 0.98451 0.99337 0.94121 0.89134 0.94593 0.89390 0.94098 0.74529 0.80446 0.80327 0.77292 0.76751 0.80062 0.88104 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.60 10.53 21.65 0.23 -53.37 16 2 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 3 Si 0.97 45.61 29.56 68.60 2.03 47.64 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.23 -12.54 10.57 84.03 0.89 -11.65 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 9 N -0.62 -30.33 2.97 -613.34 -1.82 -32.15 16 10 C 0.14 5.88 4.71 46.60 0.22 6.09 16 11 H 0.12 5.86 5.60 -2.39 -0.01 5.85 16 12 C -0.13 -4.32 6.50 32.58 0.21 -4.11 16 13 C -0.12 -3.81 6.34 32.21 0.20 -3.61 16 14 C 0.12 4.71 5.29 46.23 0.24 4.96 16 15 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 16 C 0.15 5.02 3.10 46.83 0.15 5.17 16 17 H 0.06 2.30 7.72 -2.39 -0.02 2.28 16 18 N -0.69 -16.35 3.61 -436.98 -1.58 -17.92 16 19 C 0.57 14.76 7.75 86.71 0.67 15.43 16 20 O -0.58 -20.15 16.01 -4.02 -0.06 -20.21 16 21 C -0.16 -3.10 5.84 -20.35 -0.12 -3.22 16 22 C -0.07 -0.98 9.53 22.54 0.21 -0.77 16 23 C -0.08 -1.30 10.09 22.39 0.23 -1.07 16 24 C 0.21 4.35 7.81 134.16 1.05 5.40 16 25 N -0.52 -11.92 11.31 -194.15 -2.20 -14.11 16 26 C 0.02 0.35 11.82 83.68 0.99 1.34 16 27 C -0.10 -1.47 11.75 83.14 0.98 -0.49 16 28 N -0.37 -7.25 2.93 -351.03 -1.03 -8.28 16 29 C 0.13 2.51 10.49 83.66 0.88 3.39 16 30 C -0.12 -4.13 6.25 32.43 0.20 -3.92 16 31 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 32 H 0.09 2.25 7.88 -2.39 -0.02 2.23 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 2.19 6.57 -2.39 -0.02 2.18 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.42 6.64 6.10 -92.71 -0.57 6.07 16 37 H 0.18 1.23 6.44 -2.91 -0.02 1.21 16 38 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 39 H 0.21 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.22 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.18 3.33 7.56 -2.91 -0.02 3.31 16 42 H 0.10 2.47 7.41 -2.39 -0.02 2.46 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -74.28 349.75 3.53 -70.75 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.49 Total: 17.59 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 7.47 Total: 10.08 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -6.40 Total: -125.85 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.06 Total: -20.21 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -74.28 3.53 -70.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096314974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.415 kcal (2) G-P(sol) polarization free energy of solvation -74.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds