Wall clock time and date at job start Tue Mar 31 2020 15:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99856 * 2 1 4 4 H 1.48507 * 109.46952 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47253 * 300.00015 * 3 2 1 6 6 H 1.48503 * 109.47088 * 60.00257 * 3 2 1 7 7 C 1.38808 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00360 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.50231 * 130.83818 * 359.97438 * 9 7 2 11 11 H 1.09002 * 115.85854 * 359.66748 * 10 9 7 12 12 C 1.55838 * 101.05131 * 233.98660 * 10 9 7 13 13 C 1.54847 * 103.44880 * 327.06356 * 12 10 9 14 14 C 1.50238 * 130.83604 * 180.02562 * 9 7 2 15 15 H 1.08997 * 116.46249 * 359.97438 * 14 9 7 16 16 C 1.55844 * 101.04737 * 233.94589 * 14 9 7 17 17 H 1.09000 * 110.62583 * 85.71383 * 16 14 9 18 18 N 1.46499 * 110.62564 * 208.57351 * 16 14 9 19 19 C 1.34780 * 120.00014 * 274.06894 * 18 16 14 20 20 O 1.21608 * 120.00085 * 0.02562 * 19 18 16 21 21 C 1.47388 * 119.99928 * 180.02562 * 19 18 16 22 22 N 1.31581 * 126.82618 * 0.07658 * 21 19 18 23 23 N 1.28382 * 111.96723 * 180.34923 * 22 21 19 24 24 H 0.97000 * 124.37308 * 179.70171 * 23 22 21 25 25 C 1.37052 * 111.25341 * 359.72991 * 23 22 21 26 26 C 1.39122 * 134.72126 * 180.02562 * 25 23 22 27 27 C 1.36686 * 119.78527 * 179.97438 * 26 25 23 28 28 C 1.38896 * 120.88954 * 0.02562 * 27 26 25 29 29 C 1.36714 * 120.52556 * 359.97438 * 28 27 26 30 30 C 1.39192 * 119.51247 * 0.02562 * 29 28 27 31 31 C 1.54847 * 103.44939 * 327.06787 * 16 14 9 32 32 H 0.97001 * 119.99999 * 359.97438 * 1 2 3 33 33 H 1.09005 * 110.63059 * 208.56845 * 12 10 9 34 34 H 1.09006 * 110.62566 * 85.55230 * 12 10 9 35 35 H 1.08999 * 110.62807 * 241.51447 * 13 12 10 36 36 H 1.08994 * 110.76308 * 118.54952 * 13 12 10 37 37 H 0.97000 * 120.00386 * 94.07866 * 18 16 14 38 38 H 1.08000 * 120.11177 * 0.02562 * 26 25 23 39 39 H 1.08004 * 119.55431 * 180.02562 * 27 26 25 40 40 H 1.08004 * 119.73532 * 180.02562 * 28 27 26 41 41 H 1.08001 * 120.24533 * 179.97438 * 29 28 27 42 42 H 1.08994 * 110.63305 * 118.49304 * 31 16 14 43 43 H 1.09002 * 110.62652 * 241.50875 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1499 -2.6706 0.0005 11 1 -0.8013 -1.7966 0.0071 12 6 -0.2732 -3.6105 1.2373 13 6 1.0678 -4.3848 1.2364 14 6 1.8188 -3.8071 -0.0005 15 1 2.9000 -3.9456 -0.0010 16 6 1.0665 -4.3848 -1.2371 17 1 1.6254 -4.1892 -2.1523 18 7 0.8329 -5.8218 -1.0741 19 6 1.7827 -6.7049 -1.4410 20 8 2.8339 -6.3088 -1.9068 21 6 1.5474 -8.1506 -1.2775 22 7 0.4668 -8.7240 -0.7928 23 7 0.5699 -10.0035 -0.7727 24 1 -0.1194 -10.6034 -0.4473 25 6 1.7800 -10.4122 -1.2696 26 6 2.3899 -11.6467 -1.4689 27 6 3.6465 -11.7047 -2.0037 28 6 4.3273 -10.5454 -2.3524 29 6 3.7512 -9.3194 -2.1672 30 6 2.4723 -9.2378 -1.6240 31 6 -0.2745 -3.6105 -1.2369 32 1 -0.4850 0.8401 0.0004 33 1 -1.1123 -4.2958 1.1168 34 1 -0.3799 -3.0285 2.1528 35 1 0.8938 -5.4540 1.1152 36 1 1.6275 -4.1892 2.1509 37 1 -0.0054 -6.1378 -0.7023 38 1 1.8720 -12.5562 -1.2027 39 1 4.1163 -12.6650 -2.1572 40 1 5.3193 -10.6130 -2.7741 41 1 4.2848 -8.4208 -2.4396 42 1 -0.3822 -3.0286 -2.1522 43 1 -1.1134 -4.2957 -1.1154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096474379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:01 Heat of formation + Delta-G solvation = 105.032065 kcal Electronic energy + Delta-G solvation = -27361.291438 eV Core-core repulsion = 23602.189907 eV Total energy + Delta-G solvation = -3759.101531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.63729 -39.85632 -38.13821 -37.95434 -33.91430 -32.73137 -32.23875 -30.42471 -30.14779 -29.20895 -28.95607 -27.53764 -24.61117 -23.83259 -23.27868 -22.52919 -21.22945 -20.22319 -19.44277 -18.57767 -18.32206 -17.64480 -17.02482 -16.41132 -15.96371 -15.50158 -15.37202 -14.92609 -14.70698 -14.36351 -14.10922 -14.01912 -13.70253 -13.57372 -12.43584 -12.32361 -12.24030 -12.20227 -11.73223 -11.49218 -11.43372 -11.12857 -11.00897 -10.88425 -10.85460 -10.80401 -10.33471 -10.16992 -10.04049 -9.92389 -9.74170 -9.34767 -9.21945 -9.01559 -8.90340 -8.52841 -8.27256 -6.88043 -5.69820 -3.07555 0.63269 1.13769 1.80401 2.47137 3.31937 3.35148 3.42189 3.47936 3.50067 3.66682 4.20200 4.29157 4.47687 4.62772 4.74605 4.96243 5.16890 5.25284 5.31100 5.41826 5.43366 5.62286 5.74223 5.83772 5.88784 5.97430 6.02159 6.11598 6.17836 6.21429 6.29803 6.34967 6.39412 6.55911 6.58254 6.66376 6.71731 6.76889 6.84858 7.01099 7.04341 7.30700 7.53665 7.56296 7.79374 7.90981 8.20075 8.46749 9.13722 9.76146 10.56734 11.39944 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.026878 B = 0.002819 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.499367 B = 9928.711292 C =10570.044019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.207 4.207 8 H 0.080 0.920 9 N -0.589 5.589 10 C 0.154 3.846 11 H 0.155 0.845 12 C -0.137 4.137 13 C -0.132 4.132 14 C 0.129 3.871 15 H 0.087 0.913 16 C 0.127 3.873 17 H 0.085 0.915 18 N -0.695 5.695 19 C 0.598 3.402 20 O -0.530 6.530 21 C 0.015 3.985 22 N -0.209 5.209 23 N -0.418 5.418 24 H 0.446 0.554 25 C 0.063 3.937 26 C -0.123 4.123 27 C -0.084 4.084 28 C -0.144 4.144 29 C -0.039 4.039 30 C -0.110 4.110 31 C -0.140 4.140 32 H 0.253 0.747 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.401 0.599 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.140 0.860 42 H 0.067 0.933 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 -24.271 -2.328 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.336 4.336 8 H 0.098 0.902 9 N -0.310 5.310 10 C 0.048 3.952 11 H 0.172 0.828 12 C -0.177 4.177 13 C -0.172 4.172 14 C 0.020 3.980 15 H 0.105 0.895 16 C 0.022 3.978 17 H 0.103 0.897 18 N -0.346 5.346 19 C 0.381 3.619 20 O -0.405 6.405 21 C -0.157 4.157 22 N -0.039 5.039 23 N -0.137 5.137 24 H 0.291 0.709 25 C -0.050 4.050 26 C -0.145 4.145 27 C -0.104 4.104 28 C -0.163 4.163 29 C -0.059 4.059 30 C -0.117 4.117 31 C -0.180 4.180 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.236 0.764 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.158 0.842 42 H 0.086 0.914 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.204 -23.323 -2.236 23.431 hybrid contribution 0.310 -0.099 0.151 0.359 sum 0.514 -23.423 -2.085 23.521 Atomic orbital electron populations 1.69446 1.04986 1.24822 1.57977 1.24695 0.95650 0.97495 1.03006 0.85957 0.78693 0.83466 0.77159 1.20532 1.21802 1.21872 1.19123 0.90425 0.81837 1.42169 0.90216 1.46483 1.01602 0.98793 1.84099 1.23775 0.87676 0.95165 0.88617 0.82815 1.23055 0.95173 0.98167 1.01268 1.22918 0.97618 0.97702 0.98916 1.23180 0.96289 0.86060 0.92492 0.89514 1.22721 0.98362 0.76265 1.00496 0.89691 1.46118 1.18568 1.07123 1.62770 1.16657 0.84309 0.82291 0.78662 1.90799 1.25620 1.78656 1.45411 1.23015 0.91383 0.94826 1.06487 1.72919 1.23636 0.92427 1.14886 1.43007 1.14699 1.03789 1.52202 0.70925 1.19212 0.88118 0.96030 1.01623 1.19751 0.96274 0.93875 1.04589 1.20742 0.93675 0.98896 0.97117 1.20858 1.00811 0.91892 1.02763 1.20473 0.92153 0.98818 0.94490 1.19452 0.96442 0.90581 1.05268 1.23294 0.93907 0.98403 1.02408 0.93647 0.93618 0.92681 0.93030 0.93095 0.76367 0.85535 0.85207 0.85243 0.84170 0.91445 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.30 10.46 55.49 0.58 -25.72 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.92 22.15 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 7 C -0.21 -5.75 10.59 -15.06 -0.16 -5.91 16 8 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 9 N -0.59 -14.82 2.98 -145.82 -0.44 -15.25 16 10 C 0.15 3.51 4.72 -62.79 -0.30 3.21 16 11 H 0.16 3.98 5.52 -51.93 -0.29 3.70 16 12 C -0.14 -2.71 6.44 -24.24 -0.16 -2.87 16 13 C -0.13 -2.53 6.32 -24.26 -0.15 -2.69 16 14 C 0.13 2.76 5.35 -62.82 -0.34 2.43 16 15 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 16 C 0.13 2.44 3.08 -65.44 -0.20 2.24 16 17 H 0.08 1.79 7.70 -51.93 -0.40 1.39 16 18 N -0.70 -11.23 3.63 -52.48 -0.19 -11.42 16 19 C 0.60 10.10 7.81 -12.53 -0.10 10.00 16 20 O -0.53 -10.44 16.13 5.27 0.09 -10.35 16 21 C 0.01 0.22 7.32 -80.75 -0.59 -0.37 16 22 N -0.21 -2.60 11.80 34.46 0.41 -2.19 16 23 N -0.42 -3.96 6.85 32.34 0.22 -3.74 16 24 H 0.45 2.42 8.96 -190.49 -1.71 0.71 16 25 C 0.06 0.66 7.38 -84.21 -0.62 0.04 16 26 C -0.12 -0.98 10.03 -39.81 -0.40 -1.38 16 27 C -0.08 -0.63 9.96 -39.90 -0.40 -1.03 16 28 C -0.14 -1.30 9.98 -39.89 -0.40 -1.69 16 29 C -0.04 -0.47 9.87 -39.78 -0.39 -0.86 16 30 C -0.11 -1.46 6.34 -105.06 -0.67 -2.13 16 31 C -0.14 -2.71 6.20 -24.22 -0.15 -2.86 16 32 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.05 0.77 7.82 -51.93 -0.41 0.37 16 34 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.88 6.48 -51.93 -0.34 0.55 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.40 5.75 7.75 -40.82 -0.32 5.43 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 40 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.14 1.77 7.65 -52.49 -0.40 1.37 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.06 0.91 7.34 -51.93 -0.38 0.53 16 LS Contribution 351.72 15.07 5.30 5.30 Total: -1.00 -32.25 351.72 -10.91 -43.16 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.74 Total: 7.42 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -5.11 Total: -4.34 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.58 Total: -58.31 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.25 -10.91 -43.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096474379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.189 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds