Wall clock time and date at job start Tue Mar 31 2020 15:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99856 * 2 1 4 4 H 1.48507 * 109.46952 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47253 * 300.00015 * 3 2 1 6 6 H 1.48503 * 109.47088 * 60.00257 * 3 2 1 7 7 C 1.38808 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00360 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.50231 * 130.83818 * 359.97438 * 9 7 2 11 11 H 1.09002 * 115.85854 * 359.66748 * 10 9 7 12 12 C 1.55838 * 101.05131 * 233.98660 * 10 9 7 13 13 C 1.54847 * 103.44880 * 327.06356 * 12 10 9 14 14 C 1.50238 * 130.83604 * 180.02562 * 9 7 2 15 15 H 1.08997 * 116.46249 * 359.97438 * 14 9 7 16 16 C 1.55844 * 101.04737 * 233.94589 * 14 9 7 17 17 H 1.09000 * 110.62583 * 85.71383 * 16 14 9 18 18 N 1.46499 * 110.62564 * 208.57351 * 16 14 9 19 19 C 1.34780 * 120.00014 * 274.06894 * 18 16 14 20 20 O 1.21608 * 120.00085 * 0.02562 * 19 18 16 21 21 C 1.47388 * 119.99928 * 180.02562 * 19 18 16 22 22 N 1.31581 * 126.82618 * 0.07658 * 21 19 18 23 23 N 1.28382 * 111.96723 * 180.34923 * 22 21 19 24 24 H 0.97000 * 124.37308 * 179.70171 * 23 22 21 25 25 C 1.37052 * 111.25341 * 359.72991 * 23 22 21 26 26 C 1.39122 * 134.72126 * 180.02562 * 25 23 22 27 27 C 1.36686 * 119.78527 * 179.97438 * 26 25 23 28 28 C 1.38896 * 120.88954 * 0.02562 * 27 26 25 29 29 C 1.36714 * 120.52556 * 359.97438 * 28 27 26 30 30 C 1.39192 * 119.51247 * 0.02562 * 29 28 27 31 31 C 1.54847 * 103.44939 * 327.06787 * 16 14 9 32 32 H 0.97001 * 119.99999 * 359.97438 * 1 2 3 33 33 H 1.09005 * 110.63059 * 208.56845 * 12 10 9 34 34 H 1.09006 * 110.62566 * 85.55230 * 12 10 9 35 35 H 1.08999 * 110.62807 * 241.51447 * 13 12 10 36 36 H 1.08994 * 110.76308 * 118.54952 * 13 12 10 37 37 H 0.97000 * 120.00386 * 94.07866 * 18 16 14 38 38 H 1.08000 * 120.11177 * 0.02562 * 26 25 23 39 39 H 1.08004 * 119.55431 * 180.02562 * 27 26 25 40 40 H 1.08004 * 119.73532 * 180.02562 * 28 27 26 41 41 H 1.08001 * 120.24533 * 179.97438 * 29 28 27 42 42 H 1.08994 * 110.63305 * 118.49304 * 31 16 14 43 43 H 1.09002 * 110.62652 * 241.50875 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1499 -2.6706 0.0005 11 1 -0.8013 -1.7966 0.0071 12 6 -0.2732 -3.6105 1.2373 13 6 1.0678 -4.3848 1.2364 14 6 1.8188 -3.8071 -0.0005 15 1 2.9000 -3.9456 -0.0010 16 6 1.0665 -4.3848 -1.2371 17 1 1.6254 -4.1892 -2.1523 18 7 0.8329 -5.8218 -1.0741 19 6 1.7827 -6.7049 -1.4410 20 8 2.8339 -6.3088 -1.9068 21 6 1.5474 -8.1506 -1.2775 22 7 0.4668 -8.7240 -0.7928 23 7 0.5699 -10.0035 -0.7727 24 1 -0.1194 -10.6034 -0.4473 25 6 1.7800 -10.4122 -1.2696 26 6 2.3899 -11.6467 -1.4689 27 6 3.6465 -11.7047 -2.0037 28 6 4.3273 -10.5454 -2.3524 29 6 3.7512 -9.3194 -2.1672 30 6 2.4723 -9.2378 -1.6240 31 6 -0.2745 -3.6105 -1.2369 32 1 -0.4850 0.8401 0.0004 33 1 -1.1123 -4.2958 1.1168 34 1 -0.3799 -3.0285 2.1528 35 1 0.8938 -5.4540 1.1152 36 1 1.6275 -4.1892 2.1509 37 1 -0.0054 -6.1378 -0.7023 38 1 1.8720 -12.5562 -1.2027 39 1 4.1163 -12.6650 -2.1572 40 1 5.3193 -10.6130 -2.7741 41 1 4.2848 -8.4208 -2.4396 42 1 -0.3822 -3.0286 -2.1522 43 1 -1.1134 -4.2957 -1.1154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096474379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:00 Heat of formation + Delta-G solvation = 84.520904 kcal Electronic energy + Delta-G solvation = -27362.180869 eV Core-core repulsion = 23602.189907 eV Total energy + Delta-G solvation = -3759.990962 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.49421 -41.41444 -39.63640 -38.68904 -35.49908 -34.27019 -33.49631 -31.20560 -31.13112 -30.99033 -30.53630 -29.16108 -26.32909 -25.13832 -24.16019 -23.30924 -22.76496 -21.69812 -21.03330 -20.16210 -19.25709 -18.88921 -18.56072 -17.45389 -16.96483 -16.89263 -16.75359 -16.32233 -16.16139 -15.82748 -15.30754 -15.18508 -14.99091 -14.68064 -14.08103 -13.92398 -13.49358 -13.23282 -13.16120 -12.88823 -12.87423 -12.79791 -12.63030 -12.40564 -12.22843 -12.01049 -11.98149 -11.88953 -11.58047 -11.29949 -11.20111 -11.10036 -10.99636 -10.79958 -10.04926 -9.77544 -9.09096 -8.85688 -7.79122 -5.18620 -0.21805 0.37504 0.86507 1.47183 1.47693 1.57662 1.69333 2.11194 2.22953 2.50587 2.82364 3.21384 3.34529 3.49247 3.51403 3.75812 3.94017 4.08847 4.13577 4.14049 4.28077 4.40056 4.43931 4.46677 4.51560 4.59641 4.70770 4.75620 4.78806 4.95396 5.05804 5.06189 5.14037 5.18190 5.22607 5.31665 5.43627 5.48332 5.53475 5.59454 5.70788 5.84825 5.88451 6.11003 6.26887 6.48052 6.78375 7.05757 7.17666 7.69046 8.55257 9.28176 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.026878 B = 0.002819 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.499367 B = 9928.711292 C =10570.044019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.063 4.063 3 Si 0.977 3.023 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.072 0.928 9 N -0.616 5.616 10 C 0.141 3.859 11 H 0.124 0.876 12 C -0.126 4.126 13 C -0.118 4.118 14 C 0.120 3.880 15 H 0.069 0.931 16 C 0.146 3.854 17 H 0.060 0.940 18 N -0.684 5.684 19 C 0.599 3.401 20 O -0.569 6.569 21 C -0.025 4.025 22 N -0.199 5.199 23 N -0.392 5.392 24 H 0.465 0.535 25 C 0.056 3.944 26 C -0.110 4.110 27 C -0.082 4.082 28 C -0.131 4.131 29 C -0.078 4.078 30 C -0.138 4.138 31 C -0.126 4.126 32 H 0.249 0.751 33 H 0.084 0.916 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.414 0.586 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.151 0.849 41 H 0.116 0.884 42 H 0.051 0.949 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 -28.409 -1.968 28.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.256 4.256 3 Si 0.806 3.194 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.090 0.910 9 N -0.338 5.338 10 C 0.035 3.965 11 H 0.141 0.859 12 C -0.165 4.165 13 C -0.157 4.157 14 C 0.012 3.988 15 H 0.087 0.913 16 C 0.039 3.961 17 H 0.078 0.922 18 N -0.336 5.336 19 C 0.385 3.615 20 O -0.446 6.446 21 C -0.194 4.194 22 N -0.032 5.032 23 N -0.116 5.116 24 H 0.315 0.685 25 C -0.057 4.057 26 C -0.131 4.131 27 C -0.102 4.102 28 C -0.150 4.150 29 C -0.099 4.099 30 C -0.145 4.145 31 C -0.165 4.165 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.252 0.748 38 H 0.185 0.815 39 H 0.187 0.813 40 H 0.168 0.832 41 H 0.134 0.866 42 H 0.070 0.930 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.517 -27.519 -1.865 27.587 hybrid contribution 0.574 0.981 0.017 1.136 sum 0.057 -26.539 -1.848 26.603 Atomic orbital electron populations 1.69666 1.05882 1.25028 1.58789 1.25418 0.96575 1.00181 1.03421 0.85023 0.77864 0.79762 0.76753 1.19874 1.21845 1.21821 1.19350 0.90528 0.83465 1.41913 0.91019 1.46722 1.02980 0.99353 1.84706 1.23695 0.85969 0.95407 0.91471 0.85897 1.22947 0.96694 0.97955 0.98874 1.22805 0.96774 0.98984 0.97173 1.23288 0.95939 0.84885 0.94726 0.91271 1.22197 0.97611 0.78081 0.98206 0.92218 1.45840 1.19151 1.05568 1.63042 1.16978 0.83530 0.83506 0.77528 1.90773 1.27177 1.79635 1.46997 1.22526 0.93257 0.93606 1.10057 1.72802 1.22697 0.93729 1.13924 1.43078 1.14948 1.03115 1.50426 0.68546 1.19453 0.88054 0.96174 1.02046 1.20280 0.96204 0.94079 1.02503 1.21226 0.93497 0.99770 0.95738 1.21206 1.01562 0.91322 1.00940 1.20467 0.92636 0.99468 0.97304 1.19691 0.97177 0.91311 1.06341 1.23129 0.95128 0.98151 1.00119 0.94096 0.89735 0.94398 0.90293 0.93884 0.74830 0.81532 0.81279 0.83157 0.86591 0.92979 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.42 10.46 21.65 0.23 -55.20 16 2 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 3 Si 0.98 46.80 29.55 68.60 2.03 48.83 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 7 C -0.22 -12.89 10.59 84.03 0.89 -12.00 16 8 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.62 -32.06 2.98 -615.26 -1.84 -33.90 16 10 C 0.14 6.48 4.72 46.24 0.22 6.70 16 11 H 0.12 6.56 5.52 -2.39 -0.01 6.55 16 12 C -0.13 -4.83 6.44 32.21 0.21 -4.63 16 13 C -0.12 -4.46 6.32 32.20 0.20 -4.26 16 14 C 0.12 5.28 5.35 46.21 0.25 5.53 16 15 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 16 C 0.15 5.70 3.08 46.61 0.14 5.84 16 17 H 0.06 2.65 7.70 -2.39 -0.02 2.63 16 18 N -0.68 -21.83 3.63 -438.21 -1.59 -23.42 16 19 C 0.60 20.71 7.81 86.65 0.68 21.39 16 20 O -0.57 -23.74 16.13 -4.06 -0.07 -23.81 16 21 C -0.03 -0.72 7.32 43.86 0.32 -0.40 16 22 N -0.20 -4.55 11.80 -44.88 -0.53 -5.08 16 23 N -0.39 -6.22 6.85 -51.60 -0.35 -6.57 16 24 H 0.47 3.17 8.96 -220.04 -1.97 1.20 16 25 C 0.06 1.02 7.38 39.18 0.29 1.31 16 26 C -0.11 -1.23 10.03 22.12 0.22 -1.00 16 27 C -0.08 -0.88 9.96 22.06 0.22 -0.66 16 28 C -0.13 -2.09 9.98 22.07 0.22 -1.87 16 29 C -0.08 -1.91 9.87 22.14 0.22 -1.69 16 30 C -0.14 -3.60 6.34 -20.15 -0.13 -3.73 16 31 C -0.13 -4.83 6.20 32.22 0.20 -4.63 16 32 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.08 2.59 7.82 -2.38 -0.02 2.58 16 34 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.08 2.55 6.48 -2.39 -0.02 2.53 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.41 11.01 7.75 -92.71 -0.72 10.29 16 38 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 39 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 40 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.12 3.25 7.65 -2.91 -0.02 3.22 16 42 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.09 2.86 7.34 -2.39 -0.02 2.84 16 Total: -1.00 -75.01 351.72 0.88 -74.13 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -1.62 Total: 22.28 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 4.62 Total: 2.74 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -4.08 Total: -124.17 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.07 Total: -23.81 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -75.01 0.88 -74.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096474379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.650 kcal (2) G-P(sol) polarization free energy of solvation -75.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds