Wall clock time and date at job start Tue Mar 31 2020 14:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99766 * 2 1 4 4 H 1.48489 * 109.47476 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.46793 * 239.99516 * 3 2 1 6 6 H 1.48502 * 109.47004 * 119.99855 * 3 2 1 7 7 C 1.38810 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00162 * 154.35749 * 7 2 1 9 9 N 1.36941 * 120.00086 * 334.36106 * 7 2 1 10 10 C 1.50240 * 130.83487 * 341.06671 * 9 7 2 11 11 H 1.08999 * 115.85981 * 0.40168 * 10 9 7 12 12 C 1.55839 * 101.04935 * 234.00630 * 10 9 7 13 13 C 1.54221 * 103.56700 * 327.14893 * 12 10 9 14 14 C 1.50235 * 130.84061 * 161.41187 * 9 7 2 15 15 H 1.08998 * 115.85667 * 359.60092 * 14 9 7 16 16 C 1.55840 * 101.04987 * 233.92912 * 14 9 7 17 17 H 1.09002 * 110.62770 * 85.70748 * 16 14 9 18 18 N 1.46506 * 110.62944 * 208.56992 * 16 14 9 19 19 C 1.34775 * 119.99859 * 274.08494 * 18 16 14 20 20 O 1.21664 * 120.00183 * 0.02562 * 19 18 16 21 21 C 1.46930 * 119.99677 * 179.97438 * 19 18 16 22 22 C 1.36355 * 126.82492 * 359.68796 * 21 19 18 23 23 N 1.35582 * 109.74721 * 179.86177 * 22 21 19 24 24 H 0.97001 * 124.72023 * 180.16589 * 23 22 21 25 25 C 1.37699 * 110.55484 * 0.41641 * 23 22 21 26 26 N 1.32679 * 132.94350 * 179.72707 * 25 23 22 27 27 C 1.31592 * 121.69322 * 180.02562 * 26 25 23 28 28 C 1.38594 * 121.54047 * 0.02562 * 27 26 25 29 29 C 1.38331 * 119.32419 * 359.97438 * 28 27 26 30 30 C 1.39342 * 118.05900 * 0.02562 * 29 28 27 31 31 C 1.54856 * 103.44571 * 327.06170 * 16 14 9 32 32 H 0.97001 * 120.00169 * 181.60216 * 1 2 3 33 33 H 1.09003 * 110.62812 * 85.56008 * 12 10 9 34 34 H 1.09003 * 110.62912 * 208.41563 * 12 10 9 35 35 H 1.08999 * 110.64561 * 241.43697 * 13 12 10 36 36 H 1.09007 * 110.49247 * 118.49259 * 13 12 10 37 37 H 0.96998 * 119.99576 * 94.08080 * 18 16 14 38 38 H 1.08000 * 125.13043 * 0.02562 * 22 21 19 39 39 H 1.08003 * 119.23483 * 180.02562 * 27 26 25 40 40 H 1.07997 * 120.33184 * 179.97438 * 28 27 26 41 41 H 1.08004 * 120.96658 * 179.97438 * 29 28 27 42 42 H 1.09002 * 110.62340 * 118.49281 * 31 16 14 43 43 H 1.09000 * 110.62462 * 241.50781 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0105 -1.2484 -0.4042 9 7 1.4267 -2.3295 0.5142 10 6 0.2610 -2.4941 1.4475 11 1 -0.2175 -1.5721 1.7778 12 6 0.8950 -3.3767 2.5645 13 6 1.9114 -4.2505 1.8018 14 6 1.7593 -3.7821 0.3233 15 1 2.6005 -3.9944 -0.3365 16 6 0.3823 -4.3453 -0.1404 17 1 0.2631 -4.2297 -1.2177 18 7 0.2440 -5.7522 0.2444 19 6 0.7295 -6.7208 -0.5572 20 8 1.2830 -6.4269 -1.6000 21 6 0.5914 -8.1317 -0.1710 22 6 0.0065 -8.6155 0.9618 23 7 0.0673 -9.9700 0.9661 24 1 -0.2861 -10.5366 1.6696 25 6 0.7055 -10.4289 -0.1645 26 7 1.0062 -11.6448 -0.6021 27 6 1.6361 -11.8332 -1.7420 28 6 2.0180 -10.7691 -2.5437 29 6 1.7309 -9.4781 -2.1382 30 6 1.0633 -9.3046 -0.9275 31 6 -0.6409 -3.4681 0.6223 32 1 -0.4850 -0.8397 0.0235 33 1 1.4031 -2.7559 3.3024 34 1 0.1354 -3.9952 3.0427 35 1 1.6589 -5.3065 1.8980 36 1 2.9228 -4.0621 2.1622 37 1 -0.1968 -5.9864 1.0760 38 1 -0.4403 -8.0111 1.7373 39 1 1.8606 -12.8405 -2.0604 40 1 2.5345 -10.9462 -3.4755 41 1 2.0167 -8.6294 -2.7420 42 1 -1.2686 -2.9150 -0.0763 43 1 -1.2511 -4.0798 1.2869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096563439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:32 Heat of formation + Delta-G solvation = 87.252298 kcal Electronic energy + Delta-G solvation = -27439.447030 eV Core-core repulsion = 23679.574510 eV Total energy + Delta-G solvation = -3759.872520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.90295 -39.99603 -38.40762 -37.88609 -34.02327 -33.10731 -32.53118 -30.58599 -29.89764 -29.13651 -29.03669 -27.43836 -24.17040 -24.00693 -23.13115 -22.71579 -21.42957 -20.01062 -19.48243 -18.84310 -18.57608 -17.55891 -17.04874 -16.34918 -16.21330 -15.54194 -15.30330 -15.08221 -14.94285 -14.56260 -13.88868 -13.75144 -13.67002 -13.40287 -13.10927 -12.92134 -12.59439 -12.39096 -12.19864 -11.90100 -11.72435 -11.30907 -11.05088 -10.75850 -10.58978 -10.54997 -10.23612 -10.10283 -9.98421 -9.89024 -9.56692 -9.48141 -9.39662 -8.79950 -8.68640 -8.46357 -8.30351 -6.95842 -6.18213 -3.13507 0.66548 1.08578 1.84756 2.37475 3.39621 3.45791 3.50017 3.53497 3.70946 3.77514 4.20175 4.33530 4.50231 4.56180 4.75106 4.95615 4.99455 5.06826 5.21260 5.27669 5.30815 5.46794 5.61994 5.62568 5.72895 5.78941 5.89790 5.94862 6.01557 6.09629 6.11130 6.13245 6.19424 6.34947 6.44871 6.58317 6.60911 6.68575 6.73974 6.81693 6.86508 7.05825 7.14044 7.60217 7.70946 7.81936 8.41627 8.53068 8.94614 9.77537 10.46663 11.24695 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.027079 B = 0.002822 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.777381 B = 9920.637335 C =10448.623958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.029 4.029 3 Si 1.073 2.927 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.323 4.323 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.142 3.858 11 H 0.105 0.895 12 C -0.132 4.132 13 C -0.128 4.128 14 C 0.130 3.870 15 H 0.088 0.912 16 C 0.130 3.870 17 H 0.085 0.915 18 N -0.711 5.711 19 C 0.583 3.417 20 O -0.540 6.540 21 C -0.207 4.207 22 C 0.112 3.888 23 N -0.567 5.567 24 H 0.423 0.577 25 C 0.276 3.724 26 N -0.499 5.499 27 C 0.135 3.865 28 C -0.199 4.199 29 C -0.016 4.016 30 C -0.109 4.109 31 C -0.137 4.137 32 H 0.270 0.730 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.390 0.610 38 H 0.186 0.814 39 H 0.162 0.838 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.070 0.930 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.539 -21.706 3.603 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.230 4.230 3 Si 0.903 3.097 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.450 4.450 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.034 3.966 11 H 0.123 0.877 12 C -0.171 4.171 13 C -0.167 4.167 14 C 0.021 3.979 15 H 0.106 0.894 16 C 0.024 3.976 17 H 0.103 0.897 18 N -0.361 5.361 19 C 0.370 3.630 20 O -0.418 6.418 21 C -0.219 4.219 22 C -0.020 4.020 23 N -0.172 5.172 24 H 0.261 0.739 25 C 0.044 3.956 26 N -0.212 5.212 27 C -0.030 4.030 28 C -0.220 4.220 29 C -0.043 4.043 30 C -0.116 4.116 31 C -0.177 4.177 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.224 0.776 38 H 0.203 0.797 39 H 0.179 0.821 40 H 0.157 0.843 41 H 0.164 0.836 42 H 0.089 0.911 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.517 -20.338 3.356 20.669 hybrid contribution 0.001 -1.478 0.306 1.510 sum -1.516 -21.816 3.662 22.174 Atomic orbital electron populations 1.70811 1.06381 1.30403 1.48754 1.25829 0.96622 1.01062 0.99465 0.83361 0.74603 0.75531 0.76166 1.21083 1.21992 1.22155 1.19724 0.98130 0.86546 1.40615 0.91613 1.46533 1.35431 0.99577 1.49927 1.23054 0.89023 0.95149 0.89324 0.87669 1.22823 0.97967 0.98188 0.98119 1.22777 0.98817 0.97553 0.97560 1.23235 0.94740 0.85834 0.94059 0.89403 1.22618 0.98102 0.77194 0.99651 0.89729 1.46077 1.59552 1.06807 1.23672 1.17149 0.78667 0.83431 0.83777 1.90780 1.43267 1.83348 1.24368 1.20174 1.11177 0.93041 0.97490 1.22159 0.98833 0.82395 0.98601 1.41265 1.50205 1.06387 1.19326 0.73857 1.18346 0.98149 0.90122 0.89006 1.66470 1.16037 1.22098 1.16622 1.22449 0.92929 0.99501 0.88160 1.21980 1.04702 0.92937 1.02388 1.21207 0.91969 0.97864 0.93215 1.19444 1.03213 0.92295 0.96662 1.23304 0.97037 0.97958 0.99351 0.91864 0.92560 0.93159 0.92721 0.92840 0.77577 0.79660 0.82126 0.84263 0.83614 0.91119 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.27 12.90 55.49 0.72 -26.55 16 2 C -0.03 -0.81 5.29 -17.43 -0.09 -0.90 16 3 Si 1.07 25.40 29.99 -169.99 -5.10 20.30 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.32 -9.07 10.39 -15.06 -0.16 -9.23 16 8 H 0.07 1.87 7.95 -52.49 -0.42 1.46 16 9 N -0.59 -14.62 2.81 -145.56 -0.41 -15.03 16 10 C 0.14 3.01 3.85 -62.55 -0.24 2.77 16 11 H 0.11 2.51 6.78 -51.93 -0.35 2.16 16 12 C -0.13 -2.29 6.41 -24.58 -0.16 -2.45 16 13 C -0.13 -2.23 6.29 -24.58 -0.15 -2.38 16 14 C 0.13 2.72 5.35 -62.81 -0.34 2.38 16 15 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 16 C 0.13 2.41 3.08 -65.43 -0.20 2.20 16 17 H 0.08 1.82 7.70 -51.93 -0.40 1.42 16 18 N -0.71 -10.10 3.62 -52.62 -0.19 -10.29 16 19 C 0.58 9.16 7.79 -12.74 -0.10 9.06 16 20 O -0.54 -10.71 15.98 5.22 0.08 -10.62 16 21 C -0.21 -2.64 6.27 -103.36 -0.65 -3.29 16 22 C 0.11 0.95 11.34 -16.57 -0.19 0.76 16 23 N -0.57 -4.76 5.97 -11.97 -0.07 -4.83 16 24 H 0.42 2.19 8.96 -40.82 -0.37 1.82 16 25 C 0.28 3.25 8.41 -155.52 -1.31 1.94 16 26 N -0.50 -5.77 10.39 -12.29 -0.13 -5.90 16 27 C 0.13 1.27 11.14 -17.52 -0.20 1.08 16 28 C -0.20 -1.91 10.11 -39.42 -0.40 -2.31 16 29 C -0.02 -0.20 9.97 -39.14 -0.39 -0.59 16 30 C -0.11 -1.46 6.28 -104.93 -0.66 -2.11 16 31 C -0.14 -2.48 6.07 -23.98 -0.15 -2.62 16 32 H 0.27 7.79 5.57 -40.82 -0.23 7.56 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.71 7.83 -51.93 -0.41 0.30 16 35 H 0.05 0.80 6.48 -51.93 -0.34 0.46 16 36 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.39 4.16 6.90 -40.82 -0.28 3.88 16 38 H 0.19 0.79 7.38 -52.49 -0.39 0.40 16 39 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.15 1.92 7.55 -52.48 -0.40 1.52 16 42 H 0.07 1.41 7.65 -51.93 -0.40 1.02 16 43 H 0.06 0.84 7.35 -51.93 -0.38 0.46 16 LS Contribution 349.68 15.07 5.27 5.27 Total: -1.00 -35.72 349.68 -10.46 -46.18 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.26 Total: 7.18 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -5.37 Total: -5.71 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.08 Total: -62.60 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.10 Total: 20.30 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.72 -10.46 -46.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096563439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.430 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds