Wall clock time and date at job start Tue Mar 31 2020 14:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99766 * 2 1 4 4 H 1.48489 * 109.47476 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.46793 * 239.99516 * 3 2 1 6 6 H 1.48502 * 109.47004 * 119.99855 * 3 2 1 7 7 C 1.38810 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00162 * 154.35749 * 7 2 1 9 9 N 1.36941 * 120.00086 * 334.36106 * 7 2 1 10 10 C 1.50240 * 130.83487 * 341.06671 * 9 7 2 11 11 H 1.08999 * 115.85981 * 0.40168 * 10 9 7 12 12 C 1.55839 * 101.04935 * 234.00630 * 10 9 7 13 13 C 1.54221 * 103.56700 * 327.14893 * 12 10 9 14 14 C 1.50235 * 130.84061 * 161.41187 * 9 7 2 15 15 H 1.08998 * 115.85667 * 359.60092 * 14 9 7 16 16 C 1.55840 * 101.04987 * 233.92912 * 14 9 7 17 17 H 1.09002 * 110.62770 * 85.70748 * 16 14 9 18 18 N 1.46506 * 110.62944 * 208.56992 * 16 14 9 19 19 C 1.34775 * 119.99859 * 274.08494 * 18 16 14 20 20 O 1.21664 * 120.00183 * 0.02562 * 19 18 16 21 21 C 1.46930 * 119.99677 * 179.97438 * 19 18 16 22 22 C 1.36355 * 126.82492 * 359.68796 * 21 19 18 23 23 N 1.35582 * 109.74721 * 179.86177 * 22 21 19 24 24 H 0.97001 * 124.72023 * 180.16589 * 23 22 21 25 25 C 1.37699 * 110.55484 * 0.41641 * 23 22 21 26 26 N 1.32679 * 132.94350 * 179.72707 * 25 23 22 27 27 C 1.31592 * 121.69322 * 180.02562 * 26 25 23 28 28 C 1.38594 * 121.54047 * 0.02562 * 27 26 25 29 29 C 1.38331 * 119.32419 * 359.97438 * 28 27 26 30 30 C 1.39342 * 118.05900 * 0.02562 * 29 28 27 31 31 C 1.54856 * 103.44571 * 327.06170 * 16 14 9 32 32 H 0.97001 * 120.00169 * 181.60216 * 1 2 3 33 33 H 1.09003 * 110.62812 * 85.56008 * 12 10 9 34 34 H 1.09003 * 110.62912 * 208.41563 * 12 10 9 35 35 H 1.08999 * 110.64561 * 241.43697 * 13 12 10 36 36 H 1.09007 * 110.49247 * 118.49259 * 13 12 10 37 37 H 0.96998 * 119.99576 * 94.08080 * 18 16 14 38 38 H 1.08000 * 125.13043 * 0.02562 * 22 21 19 39 39 H 1.08003 * 119.23483 * 180.02562 * 27 26 25 40 40 H 1.07997 * 120.33184 * 179.97438 * 28 27 26 41 41 H 1.08004 * 120.96658 * 179.97438 * 29 28 27 42 42 H 1.09002 * 110.62340 * 118.49281 * 31 16 14 43 43 H 1.09000 * 110.62462 * 241.50781 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0105 -1.2484 -0.4042 9 7 1.4267 -2.3295 0.5142 10 6 0.2610 -2.4941 1.4475 11 1 -0.2175 -1.5721 1.7778 12 6 0.8950 -3.3767 2.5645 13 6 1.9114 -4.2505 1.8018 14 6 1.7593 -3.7821 0.3233 15 1 2.6005 -3.9944 -0.3365 16 6 0.3823 -4.3453 -0.1404 17 1 0.2631 -4.2297 -1.2177 18 7 0.2440 -5.7522 0.2444 19 6 0.7295 -6.7208 -0.5572 20 8 1.2830 -6.4269 -1.6000 21 6 0.5914 -8.1317 -0.1710 22 6 0.0065 -8.6155 0.9618 23 7 0.0673 -9.9700 0.9661 24 1 -0.2861 -10.5366 1.6696 25 6 0.7055 -10.4289 -0.1645 26 7 1.0062 -11.6448 -0.6021 27 6 1.6361 -11.8332 -1.7420 28 6 2.0180 -10.7691 -2.5437 29 6 1.7309 -9.4781 -2.1382 30 6 1.0633 -9.3046 -0.9275 31 6 -0.6409 -3.4681 0.6223 32 1 -0.4850 -0.8397 0.0235 33 1 1.4031 -2.7559 3.3024 34 1 0.1354 -3.9952 3.0427 35 1 1.6589 -5.3065 1.8980 36 1 2.9228 -4.0621 2.1622 37 1 -0.1968 -5.9864 1.0760 38 1 -0.4403 -8.0111 1.7373 39 1 1.8606 -12.8405 -2.0604 40 1 2.5345 -10.9462 -3.4755 41 1 2.0167 -8.6294 -2.7420 42 1 -1.2686 -2.9150 -0.0763 43 1 -1.2511 -4.0798 1.2869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096563439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:31 Heat of formation + Delta-G solvation = 63.064738 kcal Electronic energy + Delta-G solvation = -27440.495881 eV Core-core repulsion = 23679.574510 eV Total energy + Delta-G solvation = -3760.921371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.71339 -41.46997 -39.66133 -38.79612 -35.59469 -34.39872 -33.92060 -31.54221 -30.95301 -30.85708 -30.37734 -28.92809 -26.01949 -24.81511 -24.34034 -23.49168 -22.86487 -21.64883 -20.78849 -20.24101 -19.59423 -19.38898 -17.88225 -17.47720 -17.09475 -16.68111 -16.57676 -16.42609 -16.09893 -15.73854 -15.58336 -15.26436 -14.99931 -14.71986 -14.23960 -13.96757 -13.83569 -13.51324 -13.43279 -13.31937 -13.03044 -12.86554 -12.61492 -12.50078 -12.37406 -11.93248 -11.82017 -11.62535 -11.45096 -11.41272 -11.11334 -10.97393 -10.55357 -10.43392 -10.05306 -9.57114 -9.18217 -8.91274 -8.39765 -5.28576 -0.14356 0.27453 0.94473 1.55966 1.63844 1.68516 1.82943 2.17356 2.41216 2.62983 2.89660 3.20292 3.37920 3.50033 3.61745 3.71506 3.81799 3.96819 4.01783 4.03002 4.14972 4.26598 4.32999 4.37664 4.47166 4.49008 4.55324 4.61794 4.68073 4.85604 4.87155 4.95247 5.02563 5.10237 5.19756 5.29218 5.32118 5.34047 5.37757 5.49161 5.62726 5.69060 5.81944 6.25871 6.31301 6.70133 6.85308 6.94422 7.38158 7.66913 8.44644 9.06311 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.027079 B = 0.002822 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.777381 B = 9920.637335 C =10448.623958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.078 4.078 3 Si 1.121 2.879 4 H -0.288 1.288 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.334 4.334 8 H 0.047 0.953 9 N -0.625 5.625 10 C 0.130 3.870 11 H 0.073 0.927 12 C -0.117 4.117 13 C -0.112 4.112 14 C 0.116 3.884 15 H 0.054 0.946 16 C 0.150 3.850 17 H 0.041 0.959 18 N -0.691 5.691 19 C 0.584 3.416 20 O -0.596 6.596 21 C -0.259 4.259 22 C 0.165 3.835 23 N -0.548 5.548 24 H 0.443 0.557 25 C 0.259 3.741 26 N -0.508 5.508 27 C 0.131 3.869 28 C -0.186 4.186 29 C -0.052 4.052 30 C -0.136 4.136 31 C -0.121 4.121 32 H 0.263 0.737 33 H 0.046 0.954 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.043 0.957 37 H 0.415 0.585 38 H 0.241 0.759 39 H 0.199 0.801 40 H 0.166 0.834 41 H 0.122 0.878 42 H 0.043 0.957 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 -24.786 6.577 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.274 4.274 3 Si 0.945 3.055 4 H -0.213 1.213 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.463 4.463 8 H 0.065 0.935 9 N -0.349 5.349 10 C 0.024 3.976 11 H 0.091 0.909 12 C -0.156 4.156 13 C -0.151 4.151 14 C 0.008 3.992 15 H 0.073 0.927 16 C 0.043 3.957 17 H 0.059 0.941 18 N -0.344 5.344 19 C 0.374 3.626 20 O -0.478 6.478 21 C -0.270 4.270 22 C 0.031 3.969 23 N -0.154 5.154 24 H 0.285 0.715 25 C 0.027 3.973 26 N -0.221 5.221 27 C -0.034 4.034 28 C -0.207 4.207 29 C -0.079 4.079 30 C -0.143 4.143 31 C -0.161 4.161 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.062 0.938 37 H 0.253 0.747 38 H 0.257 0.743 39 H 0.216 0.784 40 H 0.183 0.817 41 H 0.140 0.860 42 H 0.062 0.938 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.595 -23.516 6.391 24.507 hybrid contribution 0.358 -0.686 -0.684 1.033 sum -2.237 -24.202 5.708 24.966 Atomic orbital electron populations 1.70890 1.07082 1.30087 1.51176 1.27101 0.96805 1.04057 0.99417 0.82746 0.73724 0.71967 0.77030 1.21348 1.20829 1.20641 1.19887 0.97631 0.88498 1.40267 0.93493 1.46783 1.36690 1.00148 1.51320 1.23164 0.88466 0.95315 0.90648 0.90853 1.22762 0.98634 0.97744 0.96413 1.22677 0.98714 0.99650 0.94040 1.23341 0.94940 0.84562 0.96322 0.92722 1.21979 0.96722 0.79744 0.97292 0.94091 1.45652 1.59660 1.04489 1.24571 1.17603 0.77304 0.84793 0.82864 1.90759 1.45791 1.84309 1.26905 1.19839 1.15893 0.90953 1.00317 1.22860 0.94474 0.82414 0.97184 1.41327 1.48758 1.06665 1.18686 0.71530 1.18533 0.98999 0.89735 0.90017 1.66580 1.16318 1.21874 1.17372 1.23097 0.91890 1.00974 0.87416 1.22293 1.03430 0.91818 1.03149 1.21261 0.94098 0.98556 0.93954 1.19772 1.03719 0.93502 0.97262 1.23163 0.96398 0.97434 0.99070 0.92646 0.93495 0.87805 0.88792 0.93768 0.74657 0.74292 0.78429 0.81650 0.85965 0.93839 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.22 12.90 21.65 0.28 -57.94 16 2 C -0.08 -4.56 5.29 84.86 0.45 -4.12 16 3 Si 1.12 52.75 29.99 68.60 2.06 54.81 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.33 -19.73 10.39 84.03 0.87 -18.86 16 8 H 0.05 2.85 7.95 -2.91 -0.02 2.82 16 9 N -0.63 -32.03 2.81 -614.42 -1.73 -33.75 16 10 C 0.13 5.49 3.85 46.39 0.18 5.67 16 11 H 0.07 3.57 6.78 -2.39 -0.02 3.56 16 12 C -0.12 -3.69 6.41 31.99 0.21 -3.49 16 13 C -0.11 -3.64 6.29 31.99 0.20 -3.44 16 14 C 0.12 4.98 5.35 46.23 0.25 5.23 16 15 H 0.05 2.65 8.14 -2.39 -0.02 2.63 16 16 C 0.15 5.59 3.08 46.61 0.14 5.73 16 17 H 0.04 1.89 7.70 -2.39 -0.02 1.87 16 18 N -0.69 -18.14 3.62 -438.62 -1.59 -19.73 16 19 C 0.58 18.20 7.79 86.52 0.67 18.87 16 20 O -0.60 -25.20 15.98 -4.23 -0.07 -25.26 16 21 C -0.26 -6.14 6.27 -19.05 -0.12 -6.26 16 22 C 0.17 1.99 11.34 83.67 0.95 2.93 16 23 N -0.55 -6.86 5.97 -191.78 -1.15 -8.01 16 24 H 0.44 2.31 8.96 -92.71 -0.83 1.48 16 25 C 0.26 5.51 8.41 133.76 1.13 6.64 16 26 N -0.51 -10.54 10.39 -192.79 -2.00 -12.54 16 27 C 0.13 2.19 11.14 84.81 0.95 3.13 16 28 C -0.19 -3.44 10.11 22.38 0.23 -3.21 16 29 C -0.05 -1.36 9.97 22.56 0.22 -1.13 16 30 C -0.14 -3.55 6.28 -20.07 -0.13 -3.68 16 31 C -0.12 -4.25 6.07 32.38 0.20 -4.06 16 32 H 0.26 15.88 5.57 -92.71 -0.52 15.36 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 2.23 7.83 -2.39 -0.02 2.21 16 35 H 0.09 2.32 6.48 -2.39 -0.02 2.30 16 36 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.41 6.57 6.90 -92.71 -0.64 5.93 16 38 H 0.24 0.11 7.38 -2.91 -0.02 0.09 16 39 H 0.20 1.65 8.06 -2.91 -0.02 1.62 16 40 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.12 3.63 7.55 -2.91 -0.02 3.61 16 42 H 0.04 1.77 7.65 -2.39 -0.02 1.75 16 43 H 0.11 2.69 7.35 -2.39 -0.02 2.68 16 Total: -1.00 -88.00 349.68 2.06 -85.94 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -0.14 Total: 16.51 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.39 Total: -0.03 kcal Atomic # 7 Polarization: -125.79 SS G_CDS: -6.18 Total: -131.97 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.07 Total: -25.26 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.06 Total: 54.81 kcal Total: -88.00 2.06 -85.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096563439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.008 kcal (2) G-P(sol) polarization free energy of solvation -87.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds