Wall clock time and date at job start Tue Mar 31 2020 14:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99737 * 2 1 4 4 H 1.48504 * 109.46740 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47508 * 299.99451 * 3 2 1 6 6 H 1.48496 * 109.47638 * 60.00278 * 3 2 1 7 7 C 1.38811 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00233 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99805 * 0.02562 * 7 2 1 10 10 C 1.50234 * 130.83844 * 359.97438 * 9 7 2 11 11 H 1.08990 * 115.86391 * 0.37474 * 10 9 7 12 12 C 1.55852 * 101.04789 * 233.98480 * 10 9 7 13 13 C 1.54848 * 103.44785 * 327.06511 * 12 10 9 14 14 C 1.50237 * 130.83519 * 180.02562 * 9 7 2 15 15 H 1.09002 * 115.86320 * 359.62127 * 14 9 7 16 16 C 1.55844 * 101.05057 * 233.94509 * 14 9 7 17 17 H 1.08999 * 110.76254 * 208.50548 * 16 14 9 18 18 N 1.46504 * 110.62573 * 85.55594 * 16 14 9 19 19 C 1.34776 * 120.00177 * 159.52187 * 18 16 14 20 20 O 1.21599 * 119.99815 * 359.97438 * 19 18 16 21 21 C 1.47516 * 119.99797 * 179.97438 * 19 18 16 22 22 C 1.41034 * 119.39559 * 359.97438 * 21 19 18 23 23 C 1.35189 * 121.65656 * 180.21221 * 22 21 19 24 24 C 1.41385 * 119.93036 * 359.58534 * 23 22 21 25 25 N 1.31924 * 134.39863 * 180.11019 * 24 23 22 26 26 N 1.39911 * 109.06303 * 180.28925 * 25 24 23 27 27 H 0.97006 * 124.98888 * 179.97438 * 26 25 24 28 28 C 1.33819 * 110.02856 * 359.97438 * 26 25 24 29 29 C 1.38535 * 107.83762 * 0.02562 * 28 26 25 30 30 C 1.38220 * 119.38794 * 180.02562 * 21 19 18 31 31 C 1.54848 * 103.44677 * 327.06429 * 16 14 9 32 32 H 0.97007 * 119.99852 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.62092 * 85.55777 * 12 10 9 34 34 H 1.08997 * 110.62548 * 208.56914 * 12 10 9 35 35 H 1.08996 * 110.62725 * 241.50753 * 13 12 10 36 36 H 1.09005 * 110.76109 * 118.55255 * 13 12 10 37 37 H 0.97006 * 119.99712 * 339.52032 * 18 16 14 38 38 H 1.08008 * 119.17530 * 0.02562 * 22 21 19 39 39 H 1.07995 * 120.03605 * 179.74206 * 23 22 21 40 40 H 1.08007 * 126.08255 * 179.97438 * 28 26 25 41 41 H 1.07998 * 120.33198 * 359.97263 * 30 21 19 42 42 H 1.09004 * 110.62839 * 118.48481 * 31 16 14 43 43 H 1.08999 * 110.62877 * 241.50706 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1501 -2.6705 0.0005 11 1 -0.8014 -1.7966 -0.0059 12 6 -0.2743 -3.6100 1.2378 13 6 1.0667 -4.3843 1.2382 14 6 1.8186 -3.8072 0.0016 15 1 2.9012 -3.9344 -0.0040 16 6 1.0673 -4.3854 -1.2353 17 1 0.8932 -5.4548 -1.1165 18 7 1.8175 -4.1199 -2.4654 19 6 1.5873 -4.8598 -3.5682 20 8 0.7571 -5.7480 -3.5420 21 6 2.3423 -4.5920 -4.8068 22 6 3.3017 -3.5584 -4.8230 23 6 4.0164 -3.2710 -5.9340 24 6 3.8157 -4.0212 -7.1155 25 7 4.3380 -3.9930 -8.3266 26 7 3.7389 -4.9886 -9.1059 27 1 3.9510 -5.1707 -10.0348 28 6 2.8304 -5.6527 -8.3819 29 6 2.8165 -5.1027 -7.1105 30 6 2.0957 -5.3581 -5.9305 31 6 -0.2737 -3.6112 -1.2364 32 1 -0.4850 0.8401 -0.0004 33 1 -0.3817 -3.0276 2.1529 34 1 -1.1133 -4.2952 1.1169 35 1 0.8928 -5.4535 1.1174 36 1 1.6258 -4.1883 2.1532 37 1 2.4799 -3.4116 -2.4861 38 1 3.4675 -2.9799 -3.9261 39 1 4.7416 -2.4710 -5.9183 40 1 2.2165 -6.4714 -8.7275 41 1 1.3574 -6.1459 -5.9023 42 1 -0.3807 -3.0295 -2.1521 43 1 -1.1128 -4.2963 -1.1153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097736095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:38 Heat of formation + Delta-G solvation = 107.301263 kcal Electronic energy + Delta-G solvation = -27294.180140 eV Core-core repulsion = 23535.177008 eV Total energy + Delta-G solvation = -3759.003131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49118 -39.80822 -38.51524 -36.62664 -33.78672 -32.51817 -32.31379 -30.94495 -29.34089 -29.08820 -28.66417 -27.59734 -24.68694 -24.08969 -22.93629 -21.31174 -20.82289 -19.89264 -19.74834 -18.67353 -18.39406 -17.34929 -16.97086 -16.73447 -15.78033 -15.17355 -14.86333 -14.64600 -14.37733 -14.21176 -14.03228 -13.83368 -13.61799 -13.23178 -13.03684 -12.62195 -12.04491 -11.89906 -11.76643 -11.63794 -11.19087 -11.07096 -10.91258 -10.89260 -10.54361 -10.50045 -10.45732 -10.33180 -10.06072 -9.89040 -9.67820 -9.21659 -9.11615 -9.00932 -8.94415 -8.40235 -7.77635 -6.92718 -5.72847 -3.11884 0.34889 1.40076 2.17548 2.39745 3.16816 3.37784 3.42912 3.45812 3.64228 4.00712 4.09076 4.34553 4.42326 4.85601 4.97652 5.07653 5.15086 5.22467 5.36639 5.42479 5.44590 5.68942 5.74157 5.90609 5.97172 6.09140 6.13961 6.18102 6.24889 6.30979 6.36710 6.40621 6.46708 6.54243 6.63018 6.65961 6.74727 6.78771 6.87315 6.99712 7.17948 7.32301 7.37869 7.49691 7.81834 8.08121 8.19695 8.69905 9.08914 9.72324 10.53529 11.36149 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.003524 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.950830 B = 7943.601270 C = 9445.507827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.214 4.214 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.153 3.847 11 H 0.153 0.847 12 C -0.138 4.138 13 C -0.127 4.127 14 C 0.125 3.875 15 H 0.088 0.912 16 C 0.130 3.870 17 H 0.078 0.922 18 N -0.701 5.701 19 C 0.557 3.443 20 O -0.556 6.556 21 C -0.166 4.166 22 C -0.047 4.047 23 C -0.112 4.112 24 C 0.120 3.880 25 N -0.311 5.311 26 N -0.426 5.426 27 H 0.444 0.556 28 C 0.098 3.902 29 C -0.219 4.219 30 C 0.028 3.972 31 C -0.142 4.142 32 H 0.253 0.747 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.401 0.599 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.192 0.808 41 H 0.139 0.861 42 H 0.059 0.941 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.071 -11.780 -13.504 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.342 4.342 8 H 0.097 0.903 9 N -0.312 5.312 10 C 0.047 3.953 11 H 0.169 0.831 12 C -0.178 4.178 13 C -0.167 4.167 14 C 0.016 3.984 15 H 0.106 0.894 16 C 0.024 3.976 17 H 0.096 0.904 18 N -0.350 5.350 19 C 0.345 3.655 20 O -0.437 6.437 21 C -0.171 4.171 22 C -0.070 4.070 23 C -0.133 4.133 24 C -0.034 4.034 25 N -0.139 5.139 26 N -0.125 5.125 27 H 0.288 0.712 28 C -0.060 4.060 29 C -0.228 4.228 30 C 0.007 3.993 31 C -0.183 4.183 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.237 0.763 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.209 0.791 41 H 0.157 0.843 42 H 0.078 0.922 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.413 -11.431 -14.235 19.042 hybrid contribution 0.281 0.674 -0.068 0.734 sum 5.694 -10.756 -14.303 18.780 Atomic orbital electron populations 1.69477 1.05003 1.24830 1.57319 1.24693 0.95575 0.97456 1.02828 0.86015 0.78598 0.83719 0.77227 1.20577 1.21838 1.21874 1.19043 0.90220 0.81896 1.43013 0.90335 1.46544 1.01670 0.98575 1.84366 1.23770 0.87371 0.95297 0.88877 0.83051 1.23051 0.95234 0.98249 1.01230 1.22854 0.97694 0.97632 0.98503 1.23162 0.96032 0.86959 0.92234 0.89403 1.22637 0.92890 0.98437 0.83687 0.90391 1.45943 1.41766 1.36044 1.11233 1.18101 0.82397 0.81751 0.83301 1.90722 1.35414 1.32986 1.84561 1.19632 1.01816 1.00668 0.94977 1.20810 0.93067 0.94981 0.98138 1.19742 1.03086 1.01076 0.89442 1.21081 0.94207 0.95345 0.92817 1.77656 1.22421 1.10351 1.03501 1.46321 1.27926 1.24633 1.13610 0.71193 1.22839 0.93884 0.97785 0.91517 1.19579 1.05396 1.02843 0.95014 1.20642 0.94210 0.95711 0.88764 1.23466 0.94972 0.98343 1.01495 0.93619 0.92664 0.93320 0.93001 0.92475 0.76280 0.84814 0.84864 0.79095 0.84301 0.92206 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.63 10.47 55.49 0.58 -25.05 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.21 -5.51 10.59 -15.06 -0.16 -5.67 16 8 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.59 -13.82 2.99 -145.82 -0.44 -14.25 16 10 C 0.15 3.48 4.72 -62.78 -0.30 3.18 16 11 H 0.15 3.96 5.52 -51.93 -0.29 3.67 16 12 C -0.14 -2.72 6.44 -24.23 -0.16 -2.88 16 13 C -0.13 -2.28 6.44 -24.26 -0.16 -2.44 16 14 C 0.12 2.40 5.04 -62.82 -0.32 2.09 16 15 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 16 C 0.13 2.43 2.73 -65.44 -0.18 2.25 16 17 H 0.08 1.46 7.36 -51.93 -0.38 1.08 16 18 N -0.70 -12.23 5.04 -52.44 -0.26 -12.50 16 19 C 0.56 9.70 7.75 -12.48 -0.10 9.60 16 20 O -0.56 -11.11 15.98 5.28 0.08 -11.03 16 21 C -0.17 -2.45 5.86 -105.06 -0.62 -3.06 16 22 C -0.05 -0.63 9.39 -39.61 -0.37 -1.00 16 23 C -0.11 -1.44 10.06 -39.47 -0.40 -1.84 16 24 C 0.12 1.58 7.49 -82.97 -0.62 0.96 16 25 N -0.31 -3.82 12.69 33.31 0.42 -3.40 16 26 N -0.43 -3.30 7.17 30.87 0.22 -3.08 16 27 H 0.44 1.59 8.96 -182.74 -1.64 -0.05 16 28 C 0.10 0.74 12.09 -16.58 -0.20 0.54 16 29 C -0.22 -2.55 6.32 -105.23 -0.66 -3.21 16 30 C 0.03 0.37 9.64 -38.69 -0.37 0.00 16 31 C -0.14 -2.94 6.23 -24.21 -0.15 -3.09 16 32 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 35 H 0.05 0.82 7.82 -51.93 -0.41 0.42 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.40 6.69 6.55 -40.82 -0.27 6.42 16 38 H 0.13 1.66 6.27 -52.48 -0.33 1.33 16 39 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 40 H 0.19 0.55 8.06 -52.48 -0.42 0.12 16 41 H 0.14 1.69 7.58 -52.49 -0.40 1.29 16 42 H 0.06 1.35 7.98 -51.93 -0.41 0.93 16 43 H 0.05 1.03 7.82 -51.93 -0.41 0.63 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -33.14 351.82 -10.56 -43.70 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.59 Total: 8.97 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -4.85 Total: -4.93 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.52 Total: -58.28 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.14 -10.56 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097736095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.000 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds