Wall clock time and date at job start Tue Mar 31 2020 14:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99737 * 2 1 4 4 H 1.48504 * 109.46740 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47508 * 299.99451 * 3 2 1 6 6 H 1.48496 * 109.47638 * 60.00278 * 3 2 1 7 7 C 1.38811 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00233 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99805 * 0.02562 * 7 2 1 10 10 C 1.50234 * 130.83844 * 359.97438 * 9 7 2 11 11 H 1.08990 * 115.86391 * 0.37474 * 10 9 7 12 12 C 1.55852 * 101.04789 * 233.98480 * 10 9 7 13 13 C 1.54848 * 103.44785 * 327.06511 * 12 10 9 14 14 C 1.50237 * 130.83519 * 180.02562 * 9 7 2 15 15 H 1.09002 * 115.86320 * 359.62127 * 14 9 7 16 16 C 1.55844 * 101.05057 * 233.94509 * 14 9 7 17 17 H 1.08999 * 110.76254 * 208.50548 * 16 14 9 18 18 N 1.46504 * 110.62573 * 85.55594 * 16 14 9 19 19 C 1.34776 * 120.00177 * 159.52187 * 18 16 14 20 20 O 1.21599 * 119.99815 * 359.97438 * 19 18 16 21 21 C 1.47516 * 119.99797 * 179.97438 * 19 18 16 22 22 C 1.41034 * 119.39559 * 359.97438 * 21 19 18 23 23 C 1.35189 * 121.65656 * 180.21221 * 22 21 19 24 24 C 1.41385 * 119.93036 * 359.58534 * 23 22 21 25 25 N 1.31924 * 134.39863 * 180.11019 * 24 23 22 26 26 N 1.39911 * 109.06303 * 180.28925 * 25 24 23 27 27 H 0.97006 * 124.98888 * 179.97438 * 26 25 24 28 28 C 1.33819 * 110.02856 * 359.97438 * 26 25 24 29 29 C 1.38535 * 107.83762 * 0.02562 * 28 26 25 30 30 C 1.38220 * 119.38794 * 180.02562 * 21 19 18 31 31 C 1.54848 * 103.44677 * 327.06429 * 16 14 9 32 32 H 0.97007 * 119.99852 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.62092 * 85.55777 * 12 10 9 34 34 H 1.08997 * 110.62548 * 208.56914 * 12 10 9 35 35 H 1.08996 * 110.62725 * 241.50753 * 13 12 10 36 36 H 1.09005 * 110.76109 * 118.55255 * 13 12 10 37 37 H 0.97006 * 119.99712 * 339.52032 * 18 16 14 38 38 H 1.08008 * 119.17530 * 0.02562 * 22 21 19 39 39 H 1.07995 * 120.03605 * 179.74206 * 23 22 21 40 40 H 1.08007 * 126.08255 * 179.97438 * 28 26 25 41 41 H 1.07998 * 120.33198 * 359.97263 * 30 21 19 42 42 H 1.09004 * 110.62839 * 118.48481 * 31 16 14 43 43 H 1.08999 * 110.62877 * 241.50706 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1501 -2.6705 0.0005 11 1 -0.8014 -1.7966 -0.0059 12 6 -0.2743 -3.6100 1.2378 13 6 1.0667 -4.3843 1.2382 14 6 1.8186 -3.8072 0.0016 15 1 2.9012 -3.9344 -0.0040 16 6 1.0673 -4.3854 -1.2353 17 1 0.8932 -5.4548 -1.1165 18 7 1.8175 -4.1199 -2.4654 19 6 1.5873 -4.8598 -3.5682 20 8 0.7571 -5.7480 -3.5420 21 6 2.3423 -4.5920 -4.8068 22 6 3.3017 -3.5584 -4.8230 23 6 4.0164 -3.2710 -5.9340 24 6 3.8157 -4.0212 -7.1155 25 7 4.3380 -3.9930 -8.3266 26 7 3.7389 -4.9886 -9.1059 27 1 3.9510 -5.1707 -10.0348 28 6 2.8304 -5.6527 -8.3819 29 6 2.8165 -5.1027 -7.1105 30 6 2.0957 -5.3581 -5.9305 31 6 -0.2737 -3.6112 -1.2364 32 1 -0.4850 0.8401 -0.0004 33 1 -0.3817 -3.0276 2.1529 34 1 -1.1133 -4.2952 1.1169 35 1 0.8928 -5.4535 1.1174 36 1 1.6258 -4.1883 2.1532 37 1 2.4799 -3.4116 -2.4861 38 1 3.4675 -2.9799 -3.9261 39 1 4.7416 -2.4710 -5.9183 40 1 2.2165 -6.4714 -8.7275 41 1 1.3574 -6.1459 -5.9023 42 1 -0.3807 -3.0295 -2.1521 43 1 -1.1128 -4.2963 -1.1153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097736095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:37 Heat of formation + Delta-G solvation = 85.690278 kcal Electronic energy + Delta-G solvation = -27295.117263 eV Core-core repulsion = 23535.177008 eV Total energy + Delta-G solvation = -3759.940254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.31963 -41.26272 -39.94804 -37.66566 -35.28230 -34.37893 -33.20895 -31.87653 -30.93449 -30.52386 -30.06320 -29.04069 -26.17056 -25.47653 -24.00309 -22.66019 -21.68902 -21.50596 -21.14467 -20.28287 -19.18281 -18.80640 -18.51287 -17.66180 -17.19013 -16.73466 -16.05915 -15.99268 -15.81044 -15.45168 -15.24993 -15.13441 -14.87524 -14.56511 -14.02792 -13.92014 -13.68460 -13.61072 -12.94307 -12.87084 -12.79156 -12.72318 -12.59819 -12.53189 -12.03284 -11.90296 -11.84435 -11.66976 -11.42300 -11.39180 -11.18978 -10.92344 -10.91188 -10.63614 -9.97268 -9.81165 -8.83470 -8.69677 -7.72183 -5.11621 -0.48838 0.37857 1.35607 1.50861 1.51889 1.60563 1.79378 1.99782 2.35991 2.53390 2.92268 3.21243 3.41528 3.49369 3.64794 3.88151 4.05425 4.09731 4.13786 4.20457 4.31761 4.39488 4.42903 4.50750 4.53669 4.54678 4.69158 4.75039 4.88122 4.95900 5.07065 5.13854 5.21752 5.23456 5.32376 5.33415 5.41647 5.43772 5.56689 5.65148 5.70162 5.79973 5.94406 6.21295 6.31593 6.50392 6.71905 7.09946 7.34488 7.76704 8.62603 9.35368 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.003524 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.950830 B = 7943.601270 C = 9445.507827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.068 4.068 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.300 1.300 6 H -0.300 1.300 7 C -0.210 4.210 8 H 0.087 0.913 9 N -0.610 5.610 10 C 0.139 3.861 11 H 0.114 0.886 12 C -0.131 4.131 13 C -0.118 4.118 14 C 0.126 3.874 15 H 0.104 0.896 16 C 0.141 3.859 17 H 0.087 0.913 18 N -0.702 5.702 19 C 0.559 3.441 20 O -0.587 6.587 21 C -0.201 4.201 22 C -0.050 4.050 23 C -0.124 4.124 24 C 0.102 3.898 25 N -0.347 5.347 26 N -0.408 5.408 27 H 0.464 0.536 28 C 0.146 3.854 29 C -0.253 4.253 30 C 0.048 3.952 31 C -0.132 4.132 32 H 0.244 0.756 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.404 0.596 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.249 0.751 41 H 0.147 0.853 42 H 0.030 0.970 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.186 -14.178 -15.359 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.228 1.228 6 H -0.228 1.228 7 C -0.339 4.339 8 H 0.105 0.895 9 N -0.331 5.331 10 C 0.033 3.967 11 H 0.132 0.868 12 C -0.170 4.170 13 C -0.157 4.157 14 C 0.019 3.981 15 H 0.122 0.878 16 C 0.034 3.966 17 H 0.105 0.895 18 N -0.351 5.351 19 C 0.349 3.651 20 O -0.470 6.470 21 C -0.206 4.206 22 C -0.072 4.072 23 C -0.145 4.145 24 C -0.052 4.052 25 N -0.175 5.175 26 N -0.108 5.108 27 H 0.312 0.688 28 C -0.015 4.015 29 C -0.263 4.263 30 C 0.026 3.974 31 C -0.173 4.173 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.240 0.760 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.265 0.735 41 H 0.165 0.835 42 H 0.049 0.951 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.584 -13.846 -16.121 22.247 hybrid contribution -0.075 1.287 0.289 1.321 sum 6.509 -12.560 -15.831 21.231 Atomic orbital electron populations 1.69733 1.06213 1.24563 1.59329 1.25400 0.96274 1.00268 1.04068 0.85092 0.78376 0.80257 0.76123 1.18883 1.22761 1.22774 1.19401 0.90804 0.82927 1.40787 0.89536 1.46727 1.02235 0.99665 1.84493 1.23599 0.86794 0.95094 0.91251 0.86832 1.22944 0.97364 0.97973 0.98749 1.22808 0.96115 0.99006 0.97801 1.23378 0.97150 0.84592 0.92966 0.87830 1.22459 0.91725 0.98330 0.84092 0.89487 1.45909 1.41731 1.36313 1.11152 1.18475 0.81930 0.80910 0.83827 1.90685 1.36872 1.34296 1.85133 1.19455 1.03584 1.02954 0.94559 1.20754 0.93136 0.94892 0.98446 1.19859 1.03396 1.01625 0.89632 1.21262 0.94844 0.95934 0.93117 1.77602 1.23881 1.12441 1.03613 1.46405 1.26896 1.23132 1.14376 0.68752 1.23677 0.91785 0.96686 0.89371 1.19836 1.06087 1.03923 0.96425 1.20773 0.93333 0.94609 0.88652 1.23326 0.96852 0.97969 0.99147 0.94645 0.94338 0.91082 0.89909 0.92123 0.75974 0.84839 0.84103 0.73519 0.83517 0.95084 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.14 10.47 21.65 0.23 -54.92 16 2 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 3 Si 0.97 44.77 29.55 68.60 2.03 46.80 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 7 C -0.21 -10.93 10.59 84.03 0.89 -10.04 16 8 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.61 -28.68 2.99 -615.24 -1.84 -30.52 16 10 C 0.14 6.45 4.72 46.25 0.22 6.66 16 11 H 0.11 6.25 5.52 -2.39 -0.01 6.23 16 12 C -0.13 -5.07 6.44 32.21 0.21 -4.86 16 13 C -0.12 -3.97 6.44 32.20 0.21 -3.77 16 14 C 0.13 4.70 5.04 46.21 0.23 4.93 16 15 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 16 C 0.14 5.15 2.73 46.61 0.13 5.28 16 17 H 0.09 3.08 7.36 -2.39 -0.02 3.07 16 18 N -0.70 -24.54 5.04 -438.07 -2.21 -26.75 16 19 C 0.56 19.49 7.75 86.69 0.67 20.16 16 20 O -0.59 -23.27 15.98 -4.03 -0.06 -23.34 16 21 C -0.20 -5.91 5.86 -20.15 -0.12 -6.03 16 22 C -0.05 -1.35 9.39 22.25 0.21 -1.14 16 23 C -0.12 -3.20 10.06 22.34 0.22 -2.98 16 24 C 0.10 2.59 7.49 42.27 0.32 2.90 16 25 N -0.35 -7.89 12.69 -48.54 -0.62 -8.50 16 26 N -0.41 -4.80 7.17 -56.25 -0.40 -5.21 16 27 H 0.46 1.37 8.96 -213.44 -1.91 -0.54 16 28 C 0.15 1.52 12.09 84.46 1.02 2.54 16 29 C -0.25 -5.30 6.32 -20.26 -0.13 -5.43 16 30 C 0.05 1.18 9.64 22.84 0.22 1.40 16 31 C -0.13 -5.52 6.23 32.22 0.20 -5.32 16 32 H 0.24 13.99 8.31 -92.70 -0.77 13.22 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 2.40 7.82 -2.39 -0.02 2.38 16 35 H 0.08 2.32 7.82 -2.39 -0.02 2.30 16 36 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.40 13.63 6.55 -92.70 -0.61 13.02 16 38 H 0.13 3.45 6.27 -2.91 -0.02 3.43 16 39 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 40 H 0.25 -0.31 8.06 -2.91 -0.02 -0.33 16 41 H 0.15 3.30 7.58 -2.91 -0.02 3.27 16 42 H 0.03 1.44 7.98 -2.38 -0.02 1.42 16 43 H 0.07 2.53 7.82 -2.39 -0.02 2.51 16 Total: -1.00 -74.94 351.82 0.65 -74.29 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -1.44 Total: 27.05 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 4.97 Total: 1.10 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -4.84 Total: -125.90 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.06 Total: -23.34 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -74.94 0.65 -74.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097736095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.983 kcal (2) G-P(sol) polarization free energy of solvation -74.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds