Wall clock time and date at job start Tue Mar 31 2020 14:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99726 * 2 1 4 4 H 1.48496 * 109.46987 * 274.24351 * 3 2 1 5 5 H 1.48499 * 109.47038 * 34.24717 * 3 2 1 6 6 H 1.48506 * 109.47071 * 154.24418 * 3 2 1 7 7 C 1.38804 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00648 * 188.96957 * 7 2 1 9 9 N 1.36937 * 119.99907 * 8.97244 * 7 2 1 10 10 C 1.50239 * 130.84129 * 4.77983 * 9 7 2 11 11 H 1.09011 * 115.85130 * 359.61962 * 10 9 7 12 12 C 1.55844 * 101.05212 * 233.94784 * 10 9 7 13 13 C 1.54855 * 103.44355 * 327.05991 * 12 10 9 14 14 C 1.50246 * 130.83898 * 184.75079 * 9 7 2 15 15 H 1.08998 * 115.85715 * 359.66229 * 14 9 7 16 16 C 1.55851 * 101.05022 * 233.98892 * 14 9 7 17 17 H 1.08999 * 110.62281 * 208.41454 * 16 14 9 18 18 N 1.46503 * 110.62415 * 85.55158 * 16 14 9 19 19 C 1.34778 * 119.99711 * 155.00484 * 18 16 14 20 20 O 1.21792 * 120.00021 * 359.97438 * 19 18 16 21 21 C 1.41692 * 120.00130 * 180.02562 * 19 18 16 22 22 C 1.39185 * 125.87600 * 179.97438 * 21 19 18 23 23 C 1.38086 * 107.67784 * 180.02562 * 22 21 19 24 24 C 1.39510 * 107.56745 * 359.97438 * 23 22 21 25 25 C 1.40616 * 132.41212 * 180.02562 * 24 23 22 26 26 C 1.36294 * 119.16470 * 179.97438 * 25 24 23 27 27 C 1.39974 * 120.03287 * 0.02562 * 26 25 24 28 28 N 1.30640 * 120.99154 * 359.97438 * 27 26 25 29 29 N 1.37155 * 108.20784 * 0.02562 * 24 23 22 30 30 C 1.54855 * 103.44258 * 327.06395 * 16 14 9 31 31 H 0.96997 * 120.00468 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.62612 * 85.54914 * 12 10 9 33 33 H 1.08997 * 110.62413 * 208.40675 * 12 10 9 34 34 H 1.08999 * 110.62108 * 241.50979 * 13 12 10 35 35 H 1.08992 * 110.62754 * 118.49278 * 13 12 10 36 36 H 0.96997 * 120.00228 * 334.99484 * 18 16 14 37 37 H 1.07996 * 126.16470 * 0.04519 * 22 21 19 38 38 H 1.08000 * 126.21673 * 179.97438 * 23 22 21 39 39 H 1.08008 * 120.41946 * 0.02562 * 25 24 23 40 40 H 1.08001 * 119.98176 * 180.02562 * 26 25 24 41 41 H 1.07995 * 119.50003 * 179.97438 * 27 26 25 42 42 H 1.09002 * 110.62664 * 118.49086 * 30 16 14 43 43 H 1.09005 * 110.62176 * 241.50616 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4078 2.0983 -1.3962 5 1 1.4953 2.6251 0.7879 6 1 3.5897 1.4161 0.6084 7 6 2.0103 -1.2020 0.0005 8 1 3.0804 -1.2077 0.1464 9 7 1.3382 -2.3808 -0.1839 10 6 -0.1061 -2.6495 -0.4983 11 1 -0.7433 -1.7702 -0.5943 12 6 -0.4843 -3.6318 0.6509 13 6 0.8266 -4.4179 0.8987 14 6 1.8183 -3.8036 -0.1346 15 1 2.8787 -3.9404 0.0777 16 6 1.3367 -4.3296 -1.5204 17 1 1.1425 -5.4012 -1.4779 18 7 2.3245 -4.0264 -2.5591 19 6 2.3841 -4.7822 -3.6734 20 8 1.6171 -5.7174 -3.8167 21 6 3.3397 -4.4894 -4.6778 22 6 3.5085 -5.1860 -5.8709 23 6 4.5394 -4.5845 -6.5653 24 6 5.0005 -3.5175 -5.7939 25 6 6.0180 -2.5688 -5.9991 26 6 6.2443 -1.6209 -5.0463 27 6 5.4691 -1.5999 -3.8810 28 7 4.5229 -2.4794 -3.6866 29 7 4.2586 -3.4698 -4.6413 30 6 0.0258 -3.5433 -1.7681 31 1 -0.4851 0.8400 -0.0004 32 1 -0.7771 -3.0818 1.5453 33 1 -1.2834 -4.3025 0.3353 34 1 0.6795 -5.4804 0.7050 35 1 1.1839 -4.2579 1.9159 36 1 2.9354 -3.2817 -2.4449 37 1 2.9362 -6.0425 -6.1953 38 1 4.9197 -4.8855 -7.5303 39 1 6.6122 -2.5905 -6.9008 40 1 7.0221 -0.8857 -5.1905 41 1 5.6561 -0.8452 -3.1315 42 1 0.1106 -2.9279 -2.6638 43 1 -0.8213 -4.2247 -1.8479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097991829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:39 Heat of formation + Delta-G solvation = 123.964828 kcal Electronic energy + Delta-G solvation = -28191.260311 eV Core-core repulsion = 24432.979766 eV Total energy + Delta-G solvation = -3758.280545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.03778 -39.61742 -38.36464 -37.10772 -33.94897 -33.23414 -32.45283 -30.50865 -29.48072 -29.07642 -28.58514 -27.41115 -24.85111 -24.14874 -23.36241 -21.78507 -20.71460 -20.10058 -19.71709 -18.73827 -18.08071 -17.28987 -16.94906 -16.10561 -15.85374 -15.69796 -15.57335 -14.79805 -14.24941 -14.19649 -13.82400 -13.74233 -13.53977 -13.27466 -13.04940 -12.53125 -12.35631 -12.14093 -11.99421 -11.78863 -11.19276 -11.10844 -10.94670 -10.92112 -10.89334 -10.66935 -10.43216 -10.30901 -10.08673 -9.91278 -9.79559 -9.28158 -9.10161 -8.99330 -8.87115 -8.41258 -7.81736 -6.90962 -5.74518 -3.09904 0.31424 0.92208 1.84411 2.28209 3.10985 3.33951 3.37517 3.42004 3.71606 3.81361 4.08966 4.33394 4.41553 4.45882 4.74214 5.08879 5.17873 5.21449 5.30975 5.38068 5.51498 5.60724 5.70579 5.75964 5.83183 5.92409 5.95301 6.06967 6.10987 6.16948 6.20610 6.35655 6.47056 6.51102 6.54404 6.67094 6.68259 6.81299 6.87388 7.00911 7.19770 7.37605 7.49595 7.51633 7.80966 8.13885 8.17479 8.70501 9.07803 9.71921 10.55215 11.36670 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011294 B = 0.005185 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.575580 B = 5398.713680 C = 7356.069307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.210 4.210 8 H 0.077 0.923 9 N -0.589 5.589 10 C 0.156 3.844 11 H 0.147 0.853 12 C -0.135 4.135 13 C -0.127 4.127 14 C 0.126 3.874 15 H 0.086 0.914 16 C 0.128 3.872 17 H 0.081 0.919 18 N -0.699 5.699 19 C 0.578 3.422 20 O -0.551 6.551 21 C -0.017 4.017 22 C -0.085 4.085 23 C -0.175 4.175 24 C -0.002 4.002 25 C -0.014 4.014 26 C -0.199 4.199 27 C 0.139 3.861 28 N -0.265 5.265 29 N -0.234 5.234 30 C -0.144 4.144 31 H 0.253 0.747 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.412 0.588 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.199 0.801 42 H 0.056 0.944 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.706 -5.512 -10.713 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.741 3.259 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.338 4.338 8 H 0.095 0.905 9 N -0.310 5.310 10 C 0.050 3.950 11 H 0.164 0.836 12 C -0.174 4.174 13 C -0.167 4.167 14 C 0.017 3.983 15 H 0.104 0.896 16 C 0.021 3.979 17 H 0.099 0.901 18 N -0.350 5.350 19 C 0.366 3.634 20 O -0.431 6.431 21 C -0.134 4.134 22 C -0.110 4.110 23 C -0.201 4.201 24 C -0.113 4.113 25 C -0.041 4.041 26 C -0.222 4.222 27 C -0.053 4.053 28 N -0.074 5.074 29 N 0.002 4.998 30 C -0.184 4.184 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.250 0.750 37 H 0.182 0.818 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.215 0.785 42 H 0.075 0.925 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.441 -5.881 -9.731 15.437 hybrid contribution 1.398 1.532 -0.554 2.147 sum 11.839 -4.349 -10.285 16.274 Atomic orbital electron populations 1.69585 1.04980 1.24935 1.56993 1.24684 0.95539 0.97400 1.03034 0.86113 0.78636 0.83754 0.77348 1.21882 1.21816 1.20716 1.18977 0.90889 0.82243 1.41655 0.90527 1.46528 1.05323 0.98699 1.80451 1.23588 0.87399 0.95302 0.88741 0.83644 1.23022 0.95346 0.98032 1.01040 1.22859 0.97282 0.97514 0.99059 1.23159 0.96230 0.87056 0.91862 0.89637 1.22665 0.88790 0.98525 0.87910 0.90073 1.46200 1.37373 1.32951 1.18494 1.15786 0.82929 0.83104 0.81604 1.90819 1.42705 1.30501 1.79068 1.19736 0.98462 0.93830 1.01404 1.21306 0.98190 1.00014 0.91479 1.21015 1.00776 0.97104 1.01212 1.19427 0.99243 1.02036 0.90623 1.20904 0.93207 0.90707 0.99256 1.21454 1.03552 1.02093 0.95080 1.24115 0.89085 0.94517 0.97552 1.75696 1.19502 1.00112 1.12052 1.45901 1.23093 1.18892 1.11902 1.23459 0.95465 0.98504 1.01004 0.93651 0.92432 0.93381 0.92993 0.92441 0.74972 0.81801 0.82765 0.82868 0.83209 0.78485 0.92499 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.10 10.61 55.49 0.59 -25.51 16 2 C -0.01 -0.29 5.47 -17.44 -0.10 -0.39 16 3 Si 0.91 21.32 29.56 -169.99 -5.03 16.30 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.21 -5.57 10.56 -15.06 -0.16 -5.73 16 8 H 0.08 1.97 7.84 -52.49 -0.41 1.55 16 9 N -0.59 -14.45 2.98 -145.81 -0.44 -14.88 16 10 C 0.16 3.69 4.69 -62.81 -0.29 3.39 16 11 H 0.15 3.90 5.69 -51.92 -0.30 3.60 16 12 C -0.13 -2.79 6.44 -24.23 -0.16 -2.94 16 13 C -0.13 -2.43 6.44 -24.24 -0.16 -2.59 16 14 C 0.13 2.61 5.06 -62.80 -0.32 2.29 16 15 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 16 C 0.13 2.61 2.80 -65.43 -0.18 2.43 16 17 H 0.08 1.64 7.23 -51.93 -0.38 1.27 16 18 N -0.70 -14.12 5.06 -54.24 -0.27 -14.40 16 19 C 0.58 11.49 7.60 -14.94 -0.11 11.37 16 20 O -0.55 -11.96 16.43 5.11 0.08 -11.87 16 21 C -0.02 -0.30 6.84 -83.74 -0.57 -0.87 16 22 C -0.09 -1.19 10.49 -39.29 -0.41 -1.60 16 23 C -0.18 -2.01 10.92 -39.16 -0.43 -2.44 16 24 C 0.00 -0.02 6.80 -84.11 -0.57 -0.59 16 25 C -0.01 -0.13 10.11 -39.38 -0.40 -0.52 16 26 C -0.20 -1.66 10.04 -39.63 -0.40 -2.06 16 27 C 0.14 1.55 11.29 -17.41 -0.20 1.36 16 28 N -0.26 -4.12 9.68 30.61 0.30 -3.82 16 29 N -0.23 -3.70 4.01 -8.28 -0.03 -3.73 16 30 C -0.14 -3.12 6.23 -24.24 -0.15 -3.27 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.89 7.82 -51.93 -0.41 0.48 16 34 H 0.05 0.88 7.82 -51.93 -0.41 0.47 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.41 8.43 6.25 -40.82 -0.26 8.17 16 37 H 0.16 2.03 8.06 -52.49 -0.42 1.60 16 38 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.06 1.33 7.98 -51.93 -0.41 0.92 16 43 H 0.06 1.12 7.82 -51.93 -0.41 0.72 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -33.24 352.92 -9.57 -42.82 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -5.49 Total: 11.95 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -4.60 Total: -2.17 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.14 Total: -62.34 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.24 -9.57 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097991829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.781 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds