Wall clock time and date at job start Tue Mar 31 2020 14:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99726 * 2 1 4 4 H 1.48496 * 109.46987 * 274.24351 * 3 2 1 5 5 H 1.48499 * 109.47038 * 34.24717 * 3 2 1 6 6 H 1.48506 * 109.47071 * 154.24418 * 3 2 1 7 7 C 1.38804 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00648 * 188.96957 * 7 2 1 9 9 N 1.36937 * 119.99907 * 8.97244 * 7 2 1 10 10 C 1.50239 * 130.84129 * 4.77983 * 9 7 2 11 11 H 1.09011 * 115.85130 * 359.61962 * 10 9 7 12 12 C 1.55844 * 101.05212 * 233.94784 * 10 9 7 13 13 C 1.54855 * 103.44355 * 327.05991 * 12 10 9 14 14 C 1.50246 * 130.83898 * 184.75079 * 9 7 2 15 15 H 1.08998 * 115.85715 * 359.66229 * 14 9 7 16 16 C 1.55851 * 101.05022 * 233.98892 * 14 9 7 17 17 H 1.08999 * 110.62281 * 208.41454 * 16 14 9 18 18 N 1.46503 * 110.62415 * 85.55158 * 16 14 9 19 19 C 1.34778 * 119.99711 * 155.00484 * 18 16 14 20 20 O 1.21792 * 120.00021 * 359.97438 * 19 18 16 21 21 C 1.41692 * 120.00130 * 180.02562 * 19 18 16 22 22 C 1.39185 * 125.87600 * 179.97438 * 21 19 18 23 23 C 1.38086 * 107.67784 * 180.02562 * 22 21 19 24 24 C 1.39510 * 107.56745 * 359.97438 * 23 22 21 25 25 C 1.40616 * 132.41212 * 180.02562 * 24 23 22 26 26 C 1.36294 * 119.16470 * 179.97438 * 25 24 23 27 27 C 1.39974 * 120.03287 * 0.02562 * 26 25 24 28 28 N 1.30640 * 120.99154 * 359.97438 * 27 26 25 29 29 N 1.37155 * 108.20784 * 0.02562 * 24 23 22 30 30 C 1.54855 * 103.44258 * 327.06395 * 16 14 9 31 31 H 0.96997 * 120.00468 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.62612 * 85.54914 * 12 10 9 33 33 H 1.08997 * 110.62413 * 208.40675 * 12 10 9 34 34 H 1.08999 * 110.62108 * 241.50979 * 13 12 10 35 35 H 1.08992 * 110.62754 * 118.49278 * 13 12 10 36 36 H 0.96997 * 120.00228 * 334.99484 * 18 16 14 37 37 H 1.07996 * 126.16470 * 0.04519 * 22 21 19 38 38 H 1.08000 * 126.21673 * 179.97438 * 23 22 21 39 39 H 1.08008 * 120.41946 * 0.02562 * 25 24 23 40 40 H 1.08001 * 119.98176 * 180.02562 * 26 25 24 41 41 H 1.07995 * 119.50003 * 179.97438 * 27 26 25 42 42 H 1.09002 * 110.62664 * 118.49086 * 30 16 14 43 43 H 1.09005 * 110.62176 * 241.50616 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4078 2.0983 -1.3962 5 1 1.4953 2.6251 0.7879 6 1 3.5897 1.4161 0.6084 7 6 2.0103 -1.2020 0.0005 8 1 3.0804 -1.2077 0.1464 9 7 1.3382 -2.3808 -0.1839 10 6 -0.1061 -2.6495 -0.4983 11 1 -0.7433 -1.7702 -0.5943 12 6 -0.4843 -3.6318 0.6509 13 6 0.8266 -4.4179 0.8987 14 6 1.8183 -3.8036 -0.1346 15 1 2.8787 -3.9404 0.0777 16 6 1.3367 -4.3296 -1.5204 17 1 1.1425 -5.4012 -1.4779 18 7 2.3245 -4.0264 -2.5591 19 6 2.3841 -4.7822 -3.6734 20 8 1.6171 -5.7174 -3.8167 21 6 3.3397 -4.4894 -4.6778 22 6 3.5085 -5.1860 -5.8709 23 6 4.5394 -4.5845 -6.5653 24 6 5.0005 -3.5175 -5.7939 25 6 6.0180 -2.5688 -5.9991 26 6 6.2443 -1.6209 -5.0463 27 6 5.4691 -1.5999 -3.8810 28 7 4.5229 -2.4794 -3.6866 29 7 4.2586 -3.4698 -4.6413 30 6 0.0258 -3.5433 -1.7681 31 1 -0.4851 0.8400 -0.0004 32 1 -0.7771 -3.0818 1.5453 33 1 -1.2834 -4.3025 0.3353 34 1 0.6795 -5.4804 0.7050 35 1 1.1839 -4.2579 1.9159 36 1 2.9354 -3.2817 -2.4449 37 1 2.9362 -6.0425 -6.1953 38 1 4.9197 -4.8855 -7.5303 39 1 6.6122 -2.5905 -6.9008 40 1 7.0221 -0.8857 -5.1905 41 1 5.6561 -0.8452 -3.1315 42 1 0.1106 -2.9279 -2.6638 43 1 -0.8213 -4.2247 -1.8479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097991829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:38 Heat of formation + Delta-G solvation = 102.998170 kcal Electronic energy + Delta-G solvation = -28192.169493 eV Core-core repulsion = 24432.979766 eV Total energy + Delta-G solvation = -3759.189728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.03015 -41.22527 -39.85829 -38.11401 -35.40916 -34.55518 -34.10478 -31.47474 -31.00351 -30.82406 -30.13907 -28.87674 -26.23118 -25.71528 -24.44531 -23.02630 -21.98205 -21.53621 -21.36995 -20.38370 -19.41155 -18.86076 -18.19519 -17.32214 -16.93745 -16.85437 -16.76391 -16.66357 -15.90153 -15.67009 -15.38793 -15.05447 -14.71475 -14.54402 -14.09670 -13.81916 -13.75318 -13.62017 -13.15532 -13.11869 -12.97514 -12.85973 -12.78539 -12.72986 -12.15379 -11.96205 -11.94052 -11.76794 -11.73941 -11.53848 -11.39264 -11.09206 -10.84863 -10.79204 -10.10133 -9.93164 -8.90001 -8.79728 -7.79055 -5.15994 -0.47879 -0.08321 0.88091 1.24980 1.45485 1.47566 1.56367 2.25509 2.35152 2.42439 2.49542 3.19733 3.35254 3.40809 3.58291 3.77040 3.93734 3.97691 4.01798 4.07831 4.22722 4.34910 4.41477 4.42835 4.46940 4.58831 4.63888 4.75706 4.77925 4.78336 4.85002 4.98965 5.04363 5.09847 5.12240 5.16934 5.21491 5.33996 5.48652 5.56795 5.62239 5.68942 5.73376 5.85787 6.20404 6.51582 6.68492 7.02369 7.20083 7.70017 8.57510 9.30916 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011294 B = 0.005185 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.575580 B = 5398.713680 C = 7356.069307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.974 3.026 4 H -0.291 1.291 5 H -0.301 1.301 6 H -0.263 1.263 7 C -0.213 4.213 8 H 0.082 0.918 9 N -0.608 5.608 10 C 0.144 3.856 11 H 0.111 0.889 12 C -0.127 4.127 13 C -0.117 4.117 14 C 0.126 3.874 15 H 0.093 0.907 16 C 0.136 3.864 17 H 0.088 0.912 18 N -0.705 5.705 19 C 0.576 3.424 20 O -0.584 6.584 21 C -0.080 4.080 22 C -0.084 4.084 23 C -0.168 4.168 24 C -0.001 4.001 25 C -0.014 4.014 26 C -0.183 4.183 27 C 0.138 3.862 28 N -0.325 5.325 29 N -0.246 5.246 30 C -0.133 4.133 31 H 0.245 0.755 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.410 0.590 37 H 0.171 0.829 38 H 0.197 0.803 39 H 0.202 0.798 40 H 0.197 0.803 41 H 0.221 0.779 42 H 0.027 0.973 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.961 -5.427 -12.295 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.219 1.219 5 H -0.228 1.228 6 H -0.187 1.187 7 C -0.342 4.342 8 H 0.100 0.900 9 N -0.329 5.329 10 C 0.038 3.962 11 H 0.128 0.872 12 C -0.166 4.166 13 C -0.157 4.157 14 C 0.019 3.981 15 H 0.111 0.889 16 C 0.029 3.971 17 H 0.105 0.895 18 N -0.356 5.356 19 C 0.367 3.633 20 O -0.466 6.466 21 C -0.195 4.195 22 C -0.110 4.110 23 C -0.193 4.193 24 C -0.115 4.115 25 C -0.040 4.040 26 C -0.206 4.206 27 C -0.052 4.052 28 N -0.136 5.136 29 N -0.009 5.009 30 C -0.174 4.174 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.248 0.752 37 H 0.188 0.812 38 H 0.214 0.786 39 H 0.219 0.781 40 H 0.214 0.786 41 H 0.237 0.763 42 H 0.046 0.954 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.720 -5.824 -11.306 18.708 hybrid contribution 0.543 1.592 -0.157 1.689 sum 14.263 -4.232 -11.463 18.781 Atomic orbital electron populations 1.69825 1.06363 1.24903 1.58659 1.25479 0.96351 1.00531 1.03772 0.85104 0.78094 0.79502 0.76963 1.21896 1.22834 1.18733 1.19319 0.91342 0.83293 1.40264 0.90014 1.46704 1.05868 0.99677 1.80675 1.23436 0.86928 0.95116 0.90753 0.87157 1.22909 0.97007 0.97692 0.98976 1.22809 0.95485 0.98822 0.98565 1.23318 0.97053 0.85214 0.92529 0.88941 1.22532 0.88222 0.98375 0.87976 0.89451 1.46219 1.37336 1.33226 1.18849 1.16174 0.83041 0.82353 0.81751 1.90761 1.44279 1.31788 1.79814 1.19537 1.00636 0.96889 1.02478 1.21565 0.98785 0.99921 0.90720 1.21472 0.99481 0.96095 1.02250 1.20255 0.99169 1.02613 0.89427 1.21533 0.92178 0.89274 1.01043 1.21981 1.03156 1.02278 0.93171 1.24817 0.87861 0.93398 0.99154 1.75643 1.22307 1.01850 1.13767 1.45913 1.23302 1.18754 1.12915 1.23330 0.97083 0.98157 0.98799 0.94549 0.94127 0.90918 0.89941 0.92077 0.75191 0.81153 0.78637 0.78137 0.78598 0.76275 0.95426 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.14 10.61 21.65 0.23 -55.91 16 2 C -0.07 -3.83 5.47 84.86 0.46 -3.36 16 3 Si 0.97 44.51 29.56 68.60 2.03 46.54 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.21 -11.56 10.56 84.03 0.89 -10.67 16 8 H 0.08 4.22 7.84 -2.91 -0.02 4.19 16 9 N -0.61 -30.49 2.98 -615.23 -1.84 -32.33 16 10 C 0.14 7.04 4.69 46.22 0.22 7.26 16 11 H 0.11 6.26 5.69 -2.38 -0.01 6.25 16 12 C -0.13 -5.22 6.44 32.21 0.21 -5.01 16 13 C -0.12 -4.35 6.44 32.21 0.21 -4.14 16 14 C 0.13 5.26 5.06 46.23 0.23 5.50 16 15 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16 16 C 0.14 5.65 2.80 46.61 0.13 5.78 16 17 H 0.09 3.53 7.23 -2.39 -0.02 3.52 16 18 N -0.71 -29.67 5.06 -443.70 -2.25 -31.92 16 19 C 0.58 23.97 7.60 85.09 0.65 24.62 16 20 O -0.58 -26.41 16.43 -4.64 -0.08 -26.48 16 21 C -0.08 -2.84 6.84 39.37 0.27 -2.57 16 22 C -0.08 -2.35 10.49 22.46 0.24 -2.11 16 23 C -0.17 -3.45 10.92 22.54 0.25 -3.20 16 24 C 0.00 -0.03 6.80 39.20 0.27 0.23 16 25 C -0.01 -0.19 10.11 22.40 0.23 0.04 16 26 C -0.18 -2.25 10.04 22.24 0.22 -2.02 16 27 C 0.14 2.78 11.29 85.29 0.96 3.74 16 28 N -0.33 -10.08 9.68 -57.06 -0.55 -10.63 16 29 N -0.25 -7.72 4.01 -180.11 -0.72 -8.44 16 30 C -0.13 -5.98 6.23 32.21 0.20 -5.78 16 31 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.61 7.82 -2.39 -0.02 2.59 16 34 H 0.08 2.58 7.82 -2.39 -0.02 2.56 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.41 17.51 6.25 -92.71 -0.58 16.94 16 37 H 0.17 4.26 8.06 -2.91 -0.02 4.23 16 38 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 40 H 0.20 0.59 8.06 -2.91 -0.02 0.57 16 41 H 0.22 3.09 8.06 -2.91 -0.02 3.07 16 42 H 0.03 1.36 7.98 -2.39 -0.02 1.34 16 43 H 0.07 2.93 7.82 -2.38 -0.02 2.91 16 Total: -1.00 -77.92 352.92 2.92 -75.00 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.47 Total: 35.88 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 5.63 Total: 8.30 kcal Atomic # 7 Polarization: -134.10 SS G_CDS: -5.13 Total: -139.23 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.08 Total: -26.48 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -77.92 2.92 -75.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097991829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.999 kcal (2) G-P(sol) polarization free energy of solvation -77.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds