Wall clock time and date at job start Tue Mar 31 2020 15:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00127 * 2 1 4 4 H 1.48504 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47025 * 300.00066 * 3 2 1 6 6 H 1.48500 * 109.47131 * 60.00400 * 3 2 1 7 7 C 1.38812 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99781 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00277 * 359.97438 * 7 2 1 10 10 C 1.50245 * 130.83939 * 0.03318 * 9 7 2 11 11 H 1.08994 * 115.85273 * 359.61527 * 10 9 7 12 12 C 1.55846 * 101.04966 * 233.94397 * 10 9 7 13 13 C 1.54853 * 103.44571 * 327.05823 * 12 10 9 14 14 C 1.50239 * 130.83958 * 179.97438 * 9 7 2 15 15 H 1.09005 * 115.85975 * 359.66472 * 14 9 7 16 16 C 1.55847 * 101.05361 * 233.99211 * 14 9 7 17 17 H 1.08991 * 110.63025 * 208.57565 * 16 14 9 18 18 N 1.46503 * 110.62640 * 85.54904 * 16 14 9 19 19 C 1.34779 * 119.99580 * 155.00284 * 18 16 14 20 20 O 1.21585 * 119.99992 * 0.02562 * 19 18 16 21 21 C 1.47568 * 119.99470 * 180.02562 * 19 18 16 22 22 C 1.41758 * 120.01844 * 0.02562 * 21 19 18 23 23 C 1.35636 * 119.54596 * 180.02562 * 22 21 19 24 24 C 1.41173 * 119.50531 * 359.97438 * 23 22 21 25 25 N 1.32418 * 132.12295 * 180.02562 * 24 23 22 26 26 C 1.33599 * 109.22531 * 179.97438 * 25 24 23 27 27 C 1.34992 * 108.65981 * 359.97438 * 26 25 24 28 28 N 1.37010 * 107.14758 * 0.02562 * 27 26 25 29 29 C 1.35918 * 132.41765 * 180.32734 * 28 27 26 30 30 C 1.54853 * 103.44204 * 327.06299 * 16 14 9 31 31 H 0.97003 * 119.99983 * 359.97438 * 1 2 3 32 32 H 1.09001 * 110.62404 * 85.54754 * 12 10 9 33 33 H 1.08994 * 110.62549 * 208.41139 * 12 10 9 34 34 H 1.08994 * 110.63069 * 241.51222 * 13 12 10 35 35 H 1.09000 * 110.62636 * 118.48715 * 13 12 10 36 36 H 0.96994 * 120.00080 * 335.00100 * 18 16 14 37 37 H 1.07996 * 120.22714 * 0.02562 * 22 21 19 38 38 H 1.07992 * 120.24705 * 180.02562 * 23 22 21 39 39 H 1.07995 * 125.66321 * 179.97438 * 26 25 24 40 40 H 1.08004 * 126.42396 * 180.02562 * 27 26 25 41 41 H 1.07997 * 119.75264 * 359.91502 * 29 28 27 42 42 H 1.09002 * 110.62748 * 118.49166 * 30 16 14 43 43 H 1.09007 * 110.62507 * 241.50562 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1502 -2.6706 -0.0007 11 1 -0.8014 -1.7966 0.0058 12 6 -0.2744 -3.6109 1.2359 13 6 1.0666 -4.3852 1.2356 14 6 1.8186 -3.8072 -0.0016 15 1 2.9012 -3.9344 -0.0082 16 6 1.0663 -4.3840 -1.2385 17 1 0.8923 -5.4532 -1.1180 18 7 1.8154 -4.1171 -2.4689 19 6 1.6508 -4.9128 -3.5442 20 8 0.8802 -5.8519 -3.4932 21 6 2.4058 -4.6442 -4.7833 22 6 3.3048 -3.5497 -4.8428 23 6 3.9935 -3.3113 -5.9867 24 6 3.8050 -4.1574 -7.1010 25 7 4.3339 -4.1585 -8.3149 26 6 3.8273 -5.1776 -9.0146 27 6 2.9537 -5.8465 -8.2325 28 7 2.9298 -5.2113 -7.0188 29 6 2.2439 -5.4535 -5.8706 30 6 -0.2748 -3.6097 -1.2376 31 1 -0.4850 0.8401 0.0004 32 1 -0.3817 -3.0291 2.1514 33 1 -1.1151 -4.2941 1.1158 34 1 0.8928 -5.4543 1.1141 35 1 1.6244 -4.1874 2.1510 36 1 2.4299 -3.3677 -2.5096 37 1 3.4404 -2.9101 -3.9832 38 1 4.6816 -2.4810 -6.0444 39 1 4.0754 -5.4250 -10.0362 40 1 2.3810 -6.7188 -8.5113 41 1 1.5622 -6.2896 -5.8198 42 1 -0.3825 -3.0271 -2.1525 43 1 -1.1138 -4.2950 -1.1166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098190969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:34 Heat of formation + Delta-G solvation = 106.451524 kcal Electronic energy + Delta-G solvation = -27415.054149 eV Core-core repulsion = 23656.014170 eV Total energy + Delta-G solvation = -3759.039979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.01194 -40.06085 -38.73106 -36.94893 -34.29476 -33.62510 -32.59534 -30.80138 -29.18541 -28.97709 -28.85480 -27.78907 -24.62329 -24.11868 -23.30319 -21.99801 -21.55941 -20.21933 -19.88125 -18.81939 -18.25197 -17.29251 -17.04427 -16.64604 -16.14698 -15.89008 -15.09307 -14.86717 -14.74497 -14.55289 -14.21721 -13.94695 -13.89816 -13.57092 -13.22890 -12.91286 -12.13909 -11.98676 -11.94053 -11.84158 -11.36332 -11.23592 -11.18271 -10.99219 -10.96783 -10.59464 -10.43097 -10.36221 -10.13870 -10.04153 -9.93227 -9.35263 -9.24858 -9.11490 -9.03749 -8.59287 -8.09856 -7.02177 -5.81274 -3.20860 0.38167 0.88630 2.24856 2.42134 3.01772 3.32044 3.37345 3.40032 3.40631 3.56285 4.00207 4.32346 4.34770 4.46046 4.67914 4.71862 5.04152 5.07141 5.19751 5.21926 5.29309 5.56604 5.61504 5.64256 5.74985 5.81375 5.87058 5.98212 6.02687 6.07864 6.17572 6.22547 6.34901 6.36517 6.41743 6.53572 6.66098 6.74621 6.76007 6.88129 7.00265 7.24961 7.40706 7.61362 7.72263 7.79825 8.10341 8.37240 9.00312 9.63855 10.44173 11.27641 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.003545 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.086473 B = 7896.593332 C = 9397.610313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.217 4.217 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.154 3.846 11 H 0.154 0.846 12 C -0.140 4.140 13 C -0.127 4.127 14 C 0.125 3.875 15 H 0.089 0.911 16 C 0.127 3.873 17 H 0.083 0.917 18 N -0.692 5.692 19 C 0.565 3.435 20 O -0.550 6.550 21 C -0.151 4.151 22 C -0.075 4.075 23 C -0.084 4.084 24 C 0.233 3.767 25 N -0.495 5.495 26 C 0.032 3.968 27 C -0.099 4.099 28 N -0.367 5.367 29 C 0.126 3.874 30 C -0.143 4.143 31 H 0.254 0.746 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.404 0.596 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.182 0.818 40 H 0.185 0.815 41 H 0.178 0.822 42 H 0.060 0.940 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.382 -10.924 -9.908 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.312 5.312 10 C 0.047 3.953 11 H 0.170 0.830 12 C -0.179 4.179 13 C -0.167 4.167 14 C 0.016 3.984 15 H 0.107 0.893 16 C 0.021 3.979 17 H 0.101 0.899 18 N -0.341 5.341 19 C 0.350 3.650 20 O -0.430 6.430 21 C -0.157 4.157 22 C -0.099 4.099 23 C -0.104 4.104 24 C -0.011 4.011 25 N -0.215 5.215 26 C -0.118 4.118 27 C -0.228 4.228 28 N -0.039 5.039 29 C 0.000 4.000 30 C -0.183 4.183 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.240 0.760 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.199 0.801 40 H 0.202 0.798 41 H 0.195 0.805 42 H 0.079 0.921 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.429 -10.718 -10.195 15.441 hybrid contribution 0.088 0.532 0.187 0.571 sum 4.517 -10.186 -10.008 14.977 Atomic orbital electron populations 1.69467 1.05033 1.24964 1.57075 1.24705 0.95583 0.97520 1.02636 0.86012 0.78601 0.83608 0.77307 1.20542 1.21779 1.21792 1.19041 0.90235 0.81845 1.43367 0.90289 1.46558 1.01642 0.98574 1.84395 1.23759 0.87413 0.95319 0.88815 0.82968 1.23071 0.95233 0.98298 1.01294 1.22873 0.97690 0.97636 0.98493 1.23191 0.96083 0.87002 0.92128 0.89316 1.22735 0.92911 0.98879 0.83345 0.89899 1.45903 1.44780 1.30950 1.12495 1.17636 0.81829 0.82740 0.82788 1.90763 1.38038 1.30682 1.83478 1.19535 1.02436 0.98515 0.95250 1.21220 0.94060 0.96002 0.98646 1.20191 1.01807 0.99348 0.89073 1.21188 0.93277 0.91104 0.95523 1.70757 1.26711 1.22518 1.01476 1.22545 0.96087 0.92864 1.00324 1.22762 1.10293 1.05150 0.84623 1.42841 1.28875 1.22073 1.10082 1.21682 0.95112 0.99967 0.83228 1.23454 0.94834 0.98400 1.01640 0.93529 0.92605 0.93288 0.92956 0.92365 0.75963 0.83169 0.82490 0.80078 0.79810 0.80474 0.92136 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.87 10.46 55.49 0.58 -24.29 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 20.69 29.55 -169.99 -5.02 15.67 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.22 -5.39 10.59 -15.06 -0.16 -5.55 16 8 H 0.08 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.59 -13.21 2.99 -145.81 -0.44 -13.64 16 10 C 0.15 3.33 4.72 -62.82 -0.30 3.03 16 11 H 0.15 3.83 5.52 -51.93 -0.29 3.55 16 12 C -0.14 -2.63 6.44 -24.24 -0.16 -2.79 16 13 C -0.13 -2.17 6.44 -24.21 -0.16 -2.33 16 14 C 0.12 2.27 5.06 -62.78 -0.32 1.95 16 15 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 16 C 0.13 2.21 2.80 -65.43 -0.18 2.03 16 17 H 0.08 1.44 7.23 -51.93 -0.38 1.06 16 18 N -0.69 -10.94 5.02 -52.42 -0.26 -11.20 16 19 C 0.56 8.75 7.76 -12.45 -0.10 8.66 16 20 O -0.55 -9.90 15.92 5.29 0.08 -9.82 16 21 C -0.15 -1.96 5.84 -105.37 -0.61 -2.58 16 22 C -0.08 -0.88 9.53 -39.17 -0.37 -1.25 16 23 C -0.08 -0.98 10.09 -39.40 -0.40 -1.38 16 24 C 0.23 3.09 7.81 -155.92 -1.22 1.88 16 25 N -0.49 -6.77 11.31 -12.72 -0.14 -6.92 16 26 C 0.03 0.34 11.82 -17.94 -0.21 0.13 16 27 C -0.10 -0.97 11.75 -16.39 -0.19 -1.17 16 28 N -0.37 -4.42 2.93 -62.30 -0.18 -4.61 16 29 C 0.13 1.50 10.49 -16.36 -0.17 1.33 16 30 C -0.14 -2.76 6.22 -24.26 -0.15 -2.91 16 31 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.82 7.82 -51.93 -0.41 0.42 16 34 H 0.05 0.78 7.82 -51.93 -0.41 0.38 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.40 6.08 6.69 -40.82 -0.27 5.80 16 37 H 0.15 1.55 6.44 -52.49 -0.34 1.21 16 38 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.18 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.18 1.88 7.56 -52.49 -0.40 1.49 16 42 H 0.06 1.27 7.98 -51.93 -0.41 0.85 16 43 H 0.05 1.00 7.82 -51.93 -0.41 0.59 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -30.66 351.99 -10.26 -40.91 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.38 Total: 9.85 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -4.79 Total: -1.26 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.44 Total: -60.65 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.66 -10.26 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098190969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.364 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds