Wall clock time and date at job start Tue Mar 31 2020 15:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00127 * 2 1 4 4 H 1.48504 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47025 * 300.00066 * 3 2 1 6 6 H 1.48500 * 109.47131 * 60.00400 * 3 2 1 7 7 C 1.38812 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99781 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00277 * 359.97438 * 7 2 1 10 10 C 1.50245 * 130.83939 * 0.03318 * 9 7 2 11 11 H 1.08994 * 115.85273 * 359.61527 * 10 9 7 12 12 C 1.55846 * 101.04966 * 233.94397 * 10 9 7 13 13 C 1.54853 * 103.44571 * 327.05823 * 12 10 9 14 14 C 1.50239 * 130.83958 * 179.97438 * 9 7 2 15 15 H 1.09005 * 115.85975 * 359.66472 * 14 9 7 16 16 C 1.55847 * 101.05361 * 233.99211 * 14 9 7 17 17 H 1.08991 * 110.63025 * 208.57565 * 16 14 9 18 18 N 1.46503 * 110.62640 * 85.54904 * 16 14 9 19 19 C 1.34779 * 119.99580 * 155.00284 * 18 16 14 20 20 O 1.21585 * 119.99992 * 0.02562 * 19 18 16 21 21 C 1.47568 * 119.99470 * 180.02562 * 19 18 16 22 22 C 1.41758 * 120.01844 * 0.02562 * 21 19 18 23 23 C 1.35636 * 119.54596 * 180.02562 * 22 21 19 24 24 C 1.41173 * 119.50531 * 359.97438 * 23 22 21 25 25 N 1.32418 * 132.12295 * 180.02562 * 24 23 22 26 26 C 1.33599 * 109.22531 * 179.97438 * 25 24 23 27 27 C 1.34992 * 108.65981 * 359.97438 * 26 25 24 28 28 N 1.37010 * 107.14758 * 0.02562 * 27 26 25 29 29 C 1.35918 * 132.41765 * 180.32734 * 28 27 26 30 30 C 1.54853 * 103.44204 * 327.06299 * 16 14 9 31 31 H 0.97003 * 119.99983 * 359.97438 * 1 2 3 32 32 H 1.09001 * 110.62404 * 85.54754 * 12 10 9 33 33 H 1.08994 * 110.62549 * 208.41139 * 12 10 9 34 34 H 1.08994 * 110.63069 * 241.51222 * 13 12 10 35 35 H 1.09000 * 110.62636 * 118.48715 * 13 12 10 36 36 H 0.96994 * 120.00080 * 335.00100 * 18 16 14 37 37 H 1.07996 * 120.22714 * 0.02562 * 22 21 19 38 38 H 1.07992 * 120.24705 * 180.02562 * 23 22 21 39 39 H 1.07995 * 125.66321 * 179.97438 * 26 25 24 40 40 H 1.08004 * 126.42396 * 180.02562 * 27 26 25 41 41 H 1.07997 * 119.75264 * 359.91502 * 29 28 27 42 42 H 1.09002 * 110.62748 * 118.49166 * 30 16 14 43 43 H 1.09007 * 110.62507 * 241.50562 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1502 -2.6706 -0.0007 11 1 -0.8014 -1.7966 0.0058 12 6 -0.2744 -3.6109 1.2359 13 6 1.0666 -4.3852 1.2356 14 6 1.8186 -3.8072 -0.0016 15 1 2.9012 -3.9344 -0.0082 16 6 1.0663 -4.3840 -1.2385 17 1 0.8923 -5.4532 -1.1180 18 7 1.8154 -4.1171 -2.4689 19 6 1.6508 -4.9128 -3.5442 20 8 0.8802 -5.8519 -3.4932 21 6 2.4058 -4.6442 -4.7833 22 6 3.3048 -3.5497 -4.8428 23 6 3.9935 -3.3113 -5.9867 24 6 3.8050 -4.1574 -7.1010 25 7 4.3339 -4.1585 -8.3149 26 6 3.8273 -5.1776 -9.0146 27 6 2.9537 -5.8465 -8.2325 28 7 2.9298 -5.2113 -7.0188 29 6 2.2439 -5.4535 -5.8706 30 6 -0.2748 -3.6097 -1.2376 31 1 -0.4850 0.8401 0.0004 32 1 -0.3817 -3.0291 2.1514 33 1 -1.1151 -4.2941 1.1158 34 1 0.8928 -5.4543 1.1141 35 1 1.6244 -4.1874 2.1510 36 1 2.4299 -3.3677 -2.5096 37 1 3.4404 -2.9101 -3.9832 38 1 4.6816 -2.4810 -6.0444 39 1 4.0754 -5.4250 -10.0362 40 1 2.3810 -6.7188 -8.5113 41 1 1.5622 -6.2896 -5.8198 42 1 -0.3825 -3.0271 -2.1525 43 1 -1.1138 -4.2950 -1.1166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098190969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:33 Heat of formation + Delta-G solvation = 89.582528 kcal Electronic energy + Delta-G solvation = -27415.785644 eV Core-core repulsion = 23656.014170 eV Total energy + Delta-G solvation = -3759.771473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.88708 -41.40006 -40.10419 -37.95059 -35.51857 -34.74329 -34.33398 -31.80365 -30.94571 -30.34077 -29.82196 -29.22853 -26.17840 -25.40352 -24.21470 -23.00997 -22.70338 -21.52286 -21.45771 -20.33073 -19.24767 -18.82375 -18.34493 -17.58872 -17.17882 -17.04764 -16.74445 -16.14753 -15.95151 -15.63332 -15.53681 -15.32168 -14.95295 -14.75430 -14.37470 -14.12985 -13.70832 -13.63598 -12.98184 -12.89048 -12.83814 -12.79688 -12.73796 -12.65116 -12.15954 -12.06543 -11.91023 -11.85352 -11.68693 -11.34165 -11.25716 -10.98495 -10.92245 -10.73307 -10.12463 -9.86265 -8.96844 -8.84102 -7.73173 -5.12646 -0.55296 -0.01599 1.35816 1.48937 1.50958 1.52878 1.60792 2.03803 2.23802 2.52646 2.54397 3.15653 3.40565 3.45010 3.49009 3.52975 3.67762 3.87007 4.02384 4.11052 4.28792 4.30166 4.38714 4.46363 4.48678 4.52285 4.66047 4.70747 4.80856 4.86271 4.87475 4.94538 4.98357 5.12072 5.20032 5.21772 5.31324 5.41633 5.54075 5.58275 5.60682 5.72441 5.87767 5.93021 6.30734 6.54653 6.75433 7.08880 7.13880 7.76102 8.61310 9.34213 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.003545 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.086473 B = 7896.593332 C = 9397.610313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.300 1.300 6 H -0.302 1.302 7 C -0.210 4.210 8 H 0.088 0.912 9 N -0.610 5.610 10 C 0.139 3.861 11 H 0.114 0.886 12 C -0.133 4.133 13 C -0.119 4.119 14 C 0.127 3.873 15 H 0.105 0.895 16 C 0.139 3.861 17 H 0.094 0.906 18 N -0.693 5.693 19 C 0.570 3.430 20 O -0.575 6.575 21 C -0.164 4.164 22 C -0.076 4.076 23 C -0.087 4.087 24 C 0.206 3.794 25 N -0.524 5.524 26 C 0.020 3.980 27 C -0.090 4.090 28 N -0.373 5.373 29 C 0.135 3.865 30 C -0.133 4.133 31 H 0.244 0.756 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.408 0.592 37 H 0.160 0.840 38 H 0.172 0.828 39 H 0.213 0.787 40 H 0.222 0.778 41 H 0.192 0.808 42 H 0.035 0.965 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.573 -12.996 -10.821 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.227 1.227 6 H -0.230 1.230 7 C -0.339 4.339 8 H 0.106 0.894 9 N -0.331 5.331 10 C 0.032 3.968 11 H 0.132 0.868 12 C -0.172 4.172 13 C -0.158 4.158 14 C 0.019 3.981 15 H 0.123 0.877 16 C 0.033 3.967 17 H 0.111 0.889 18 N -0.341 5.341 19 C 0.357 3.643 20 O -0.457 6.457 21 C -0.170 4.170 22 C -0.100 4.100 23 C -0.107 4.107 24 C -0.037 4.037 25 N -0.245 5.245 26 C -0.129 4.129 27 C -0.218 4.218 28 N -0.046 5.046 29 C 0.010 3.990 30 C -0.174 4.174 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.245 0.755 37 H 0.177 0.823 38 H 0.190 0.810 39 H 0.230 0.770 40 H 0.239 0.761 41 H 0.209 0.791 42 H 0.054 0.946 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.657 -12.822 -11.122 17.892 hybrid contribution -0.286 1.082 0.361 1.176 sum 5.371 -11.740 -10.761 16.807 Atomic orbital electron populations 1.69722 1.06206 1.24575 1.59265 1.25377 0.96224 1.00213 1.04052 0.85120 0.78444 0.80363 0.76069 1.18812 1.22742 1.23040 1.19394 0.90832 0.82843 1.40817 0.89405 1.46738 1.02211 0.99674 1.84511 1.23583 0.86825 0.95128 0.91260 0.86837 1.22972 0.97379 0.98054 0.98843 1.22832 0.96104 0.99029 0.97857 1.23407 0.97233 0.84549 0.92878 0.87674 1.22525 0.91666 0.98824 0.83676 0.88856 1.45836 1.44721 1.31260 1.12332 1.17867 0.81332 0.81963 0.83155 1.90743 1.39247 1.31745 1.83989 1.19332 1.03300 0.99779 0.94635 1.21255 0.93886 0.95845 0.99044 1.20388 1.01965 0.99618 0.88711 1.21481 0.94180 0.92074 0.95970 1.70734 1.27680 1.24000 1.02078 1.23188 0.95928 0.92104 1.01654 1.23493 1.09570 1.05407 0.83379 1.43020 1.28742 1.22159 1.10648 1.21832 0.94561 0.99725 0.82931 1.23312 0.96753 0.98013 0.99286 0.94655 0.94539 0.91084 0.89857 0.92251 0.75546 0.82282 0.81049 0.77021 0.76141 0.79128 0.94600 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.26 10.46 21.65 0.23 -53.03 16 2 C -0.07 -3.47 5.50 84.86 0.47 -3.00 16 3 Si 0.97 43.19 29.55 68.60 2.03 45.22 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.21 -10.38 10.59 84.03 0.89 -9.49 16 8 H 0.09 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.61 -27.00 2.99 -615.23 -1.84 -28.84 16 10 C 0.14 6.06 4.72 46.21 0.22 6.27 16 11 H 0.11 5.97 5.52 -2.39 -0.01 5.96 16 12 C -0.13 -4.88 6.44 32.21 0.21 -4.67 16 13 C -0.12 -3.75 6.44 32.23 0.21 -3.54 16 14 C 0.13 4.34 5.06 46.24 0.23 4.57 16 15 H 0.11 3.27 8.14 -2.38 -0.02 3.25 16 16 C 0.14 4.59 2.80 46.61 0.13 4.72 16 17 H 0.09 2.95 7.23 -2.39 -0.02 2.93 16 18 N -0.69 -20.97 5.02 -438.03 -2.20 -23.17 16 19 C 0.57 16.92 7.76 86.70 0.67 17.59 16 20 O -0.58 -19.85 15.92 -3.98 -0.06 -19.91 16 21 C -0.16 -4.07 5.84 -20.35 -0.12 -4.18 16 22 C -0.08 -1.70 9.53 22.54 0.21 -1.49 16 23 C -0.09 -1.95 10.09 22.39 0.23 -1.72 16 24 C 0.21 5.25 7.81 134.16 1.05 6.29 16 25 N -0.52 -13.68 11.31 -194.15 -2.20 -15.88 16 26 C 0.02 0.38 11.82 83.68 0.99 1.37 16 27 C -0.09 -1.52 11.75 83.14 0.98 -0.54 16 28 N -0.37 -8.30 2.93 -351.03 -1.03 -9.33 16 29 C 0.14 3.01 10.49 83.66 0.88 3.88 16 30 C -0.13 -5.08 6.22 32.19 0.20 -4.88 16 31 H 0.24 13.58 8.31 -92.71 -0.77 12.81 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 2.26 7.82 -2.39 -0.02 2.24 16 34 H 0.08 2.16 7.82 -2.39 -0.02 2.14 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.41 11.80 6.69 -92.71 -0.62 11.18 16 37 H 0.16 3.14 6.44 -2.91 -0.02 3.12 16 38 H 0.17 3.16 8.06 -2.91 -0.02 3.13 16 39 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 40 H 0.22 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.19 3.64 7.56 -2.91 -0.02 3.62 16 42 H 0.04 1.52 7.98 -2.39 -0.02 1.50 16 43 H 0.07 2.38 7.82 -2.38 -0.02 2.37 16 Total: -1.00 -67.17 351.99 2.80 -64.37 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.43 Total: 29.39 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 7.44 Total: 11.17 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -7.04 Total: -130.25 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.06 Total: -19.91 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -67.17 2.80 -64.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098190969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.952 kcal (2) G-P(sol) polarization free energy of solvation -67.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds