Wall clock time and date at job start Tue Mar 31 2020 15:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00123 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99843 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.50237 * 130.84209 * 359.65943 * 9 7 2 11 11 H 1.09009 * 115.85557 * 0.38748 * 10 9 7 12 12 C 1.55843 * 101.05001 * 234.00565 * 10 9 7 13 13 C 1.54221 * 103.56560 * 327.14286 * 12 10 9 14 14 C 1.50242 * 130.83910 * 179.97438 * 9 7 2 15 15 H 1.09004 * 115.85357 * 359.61111 * 14 9 7 16 16 C 1.55843 * 101.05320 * 233.93145 * 14 9 7 17 17 H 1.08998 * 110.62858 * 208.57003 * 16 14 9 18 18 N 1.46503 * 110.62573 * 85.70919 * 16 14 9 19 19 C 1.34770 * 119.99849 * 154.99880 * 18 16 14 20 20 O 1.21613 * 120.00283 * 0.02562 * 19 18 16 21 21 C 1.47389 * 119.99949 * 180.02562 * 19 18 16 22 22 N 1.31568 * 126.82621 * 359.68954 * 21 19 18 23 23 N 1.28383 * 111.96887 * 179.80686 * 22 21 19 24 24 H 0.96998 * 124.37486 * 180.23167 * 23 22 21 25 25 C 1.37053 * 111.25623 * 0.47728 * 23 22 21 26 26 C 1.39117 * 134.72393 * 179.70350 * 25 23 22 27 27 C 1.36685 * 119.78468 * 180.02562 * 26 25 23 28 28 C 1.38903 * 120.88899 * 0.02562 * 27 26 25 29 29 C 1.36711 * 120.52545 * 359.96186 * 28 27 26 30 30 C 1.39190 * 119.51317 * 0.03772 * 29 28 27 31 31 C 1.54852 * 103.44469 * 327.06434 * 16 14 9 32 32 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 33 33 H 1.09001 * 110.62876 * 85.54769 * 12 10 9 34 34 H 1.09007 * 110.62768 * 208.40907 * 12 10 9 35 35 H 1.08990 * 110.64658 * 241.43522 * 13 12 10 36 36 H 1.09002 * 110.49172 * 118.49253 * 13 12 10 37 37 H 0.96999 * 120.00432 * 335.00582 * 18 16 14 38 38 H 1.07999 * 120.11140 * 0.03465 * 26 25 23 39 39 H 1.07998 * 119.55430 * 180.02562 * 27 26 25 40 40 H 1.07998 * 119.73520 * 179.97438 * 28 27 26 41 41 H 1.08001 * 120.24254 * 180.02562 * 29 28 27 42 42 H 1.09002 * 110.62844 * 118.48785 * 31 16 14 43 43 H 1.09006 * 110.62504 * 241.35304 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 -0.1500 -2.6706 0.0068 11 1 -0.8014 -1.7966 0.0057 12 6 -0.2684 -3.6131 1.2423 13 6 1.0672 -4.3842 1.2383 14 6 1.8187 -3.8072 0.0005 15 1 2.9013 -3.9343 -0.0061 16 6 1.0661 -4.3850 -1.2358 17 1 0.8923 -5.4542 -1.1144 18 7 1.8169 -4.1223 -2.4661 19 6 1.6515 -4.9199 -3.5397 20 8 0.8786 -5.8575 -3.4875 21 6 2.4072 -4.6560 -4.7773 22 7 3.2684 -3.6828 -4.9831 23 7 3.7648 -3.7230 -6.1664 24 1 4.4191 -3.0934 -6.5074 25 6 3.2468 -4.7672 -6.8873 26 6 3.4285 -5.2502 -8.1792 27 6 2.7324 -6.3498 -8.5971 28 6 1.8419 -6.9950 -7.7485 29 6 1.6446 -6.5413 -6.4740 30 6 2.3435 -5.4232 -6.0283 31 6 -0.2749 -3.6107 -1.2352 32 1 -0.4850 0.8400 0.0004 33 1 -0.3714 -3.0329 2.1593 34 1 -1.1097 -4.2962 1.1250 35 1 0.8933 -5.4534 1.1178 36 1 1.6252 -4.1857 2.1534 37 1 2.4331 -3.3744 -2.5079 38 1 4.1175 -4.7582 -8.8497 39 1 2.8766 -6.7219 -9.6007 40 1 1.3013 -7.8620 -8.0982 41 1 0.9515 -7.0468 -5.8179 42 1 -0.3828 -3.0288 -2.1506 43 1 -1.1140 -4.2962 -1.1162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098319256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:04 Heat of formation + Delta-G solvation = 99.274376 kcal Electronic energy + Delta-G solvation = -27425.970425 eV Core-core repulsion = 23666.619221 eV Total energy + Delta-G solvation = -3759.351203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.52214 -39.63439 -38.16926 -37.86797 -33.76434 -32.66262 -32.41364 -30.32690 -30.06562 -29.09622 -28.75307 -27.67900 -24.43209 -23.94644 -23.26350 -22.44953 -21.06329 -19.81184 -19.61267 -18.65724 -18.22882 -17.48148 -16.97950 -16.43242 -15.84604 -15.61260 -15.40078 -14.79278 -14.37194 -14.21125 -14.15538 -13.86872 -13.77557 -13.39602 -12.79068 -12.34493 -12.17578 -12.02311 -11.80067 -11.36148 -11.25428 -11.08469 -10.99443 -10.92299 -10.87073 -10.48740 -10.33220 -10.23050 -10.10430 -9.93327 -9.83418 -9.24539 -9.13819 -8.94105 -8.92290 -8.48674 -8.17621 -6.92489 -5.72097 -3.10913 0.73572 1.22320 1.91651 2.59810 3.38143 3.42018 3.42669 3.43781 3.50145 3.76592 4.31583 4.40803 4.42996 4.72665 4.81257 5.05921 5.15355 5.24346 5.37233 5.42053 5.54866 5.68617 5.73908 5.81370 5.90747 6.05375 6.08469 6.13946 6.17479 6.29165 6.34403 6.36659 6.45339 6.52108 6.64085 6.66016 6.76794 6.86245 6.87982 6.98934 7.13672 7.35483 7.49555 7.68350 7.81930 8.07132 8.19751 8.59172 9.09705 9.72926 10.53947 11.36953 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.003523 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.967512 B = 7944.845500 C = 9273.484020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.213 4.213 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.154 3.846 11 H 0.154 0.846 12 C -0.138 4.138 13 C -0.127 4.127 14 C 0.125 3.875 15 H 0.088 0.912 16 C 0.128 3.872 17 H 0.083 0.917 18 N -0.688 5.688 19 C 0.599 3.401 20 O -0.542 6.542 21 C 0.013 3.987 22 N -0.202 5.202 23 N -0.417 5.417 24 H 0.446 0.554 25 C 0.063 3.937 26 C -0.123 4.123 27 C -0.085 4.085 28 C -0.145 4.145 29 C -0.039 4.039 30 C -0.110 4.110 31 C -0.144 4.144 32 H 0.254 0.746 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.409 0.591 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.139 0.861 42 H 0.059 0.941 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.602 -11.482 -13.658 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.341 4.341 8 H 0.095 0.905 9 N -0.311 5.311 10 C 0.047 3.953 11 H 0.170 0.830 12 C -0.178 4.178 13 C -0.166 4.166 14 C 0.016 3.984 15 H 0.106 0.894 16 C 0.021 3.979 17 H 0.101 0.899 18 N -0.337 5.337 19 C 0.382 3.618 20 O -0.418 6.418 21 C -0.159 4.159 22 N -0.031 5.031 23 N -0.136 5.136 24 H 0.291 0.709 25 C -0.051 4.051 26 C -0.144 4.144 27 C -0.106 4.106 28 C -0.165 4.165 29 C -0.059 4.059 30 C -0.117 4.117 31 C -0.184 4.184 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.245 0.755 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.157 0.843 42 H 0.078 0.922 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.555 -10.865 -13.038 17.857 hybrid contribution 0.899 1.016 -0.703 1.528 sum 6.454 -9.849 -13.741 18.096 Atomic orbital electron populations 1.69445 1.04983 1.25051 1.57298 1.24686 0.95577 0.97436 1.02835 0.86149 0.78381 0.83136 0.77784 1.21323 1.21649 1.21301 1.18957 0.90186 0.81925 1.43069 0.90460 1.46533 1.01685 0.98591 1.84309 1.23856 0.87375 0.95246 0.88783 0.82966 1.22939 0.95317 0.98313 1.01217 1.22761 0.97711 0.97689 0.98488 1.23189 0.96097 0.86940 0.92135 0.89375 1.22717 0.92883 0.98823 0.83428 0.89935 1.45894 1.44490 1.31047 1.12277 1.16661 0.81232 0.82677 0.81217 1.90753 1.37490 1.30807 1.82777 1.23001 1.01343 0.95519 0.96065 1.73010 1.08948 1.20121 1.01016 1.43065 1.37067 1.25427 1.08084 0.70880 1.19237 0.98462 0.92088 0.95266 1.19751 1.03422 0.98917 0.92314 1.20722 0.95553 0.94577 0.99750 1.20833 1.00376 1.01393 0.93872 1.20439 0.96766 0.93152 0.95592 1.19465 1.00801 0.98935 0.92530 1.23544 0.94815 0.98420 1.01625 0.93524 0.92665 0.93258 0.92912 0.92437 0.75501 0.85551 0.85268 0.85331 0.84281 0.92175 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.94 10.46 55.49 0.58 -25.36 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.21 -5.63 10.59 -15.06 -0.16 -5.79 16 8 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.59 -14.12 2.98 -145.54 -0.43 -14.55 16 10 C 0.15 3.53 4.74 -62.57 -0.30 3.23 16 11 H 0.15 4.00 5.52 -51.92 -0.29 3.72 16 12 C -0.14 -2.74 6.41 -24.57 -0.16 -2.90 16 13 C -0.13 -2.30 6.41 -24.56 -0.16 -2.46 16 14 C 0.13 2.47 5.06 -62.78 -0.32 2.16 16 15 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 16 C 0.13 2.44 2.80 -65.44 -0.18 2.26 16 17 H 0.08 1.55 7.22 -51.93 -0.38 1.17 16 18 N -0.69 -12.82 5.08 -52.48 -0.27 -13.08 16 19 C 0.60 11.08 7.81 -12.54 -0.10 10.98 16 20 O -0.54 -10.94 16.05 5.27 0.08 -10.86 16 21 C 0.01 0.21 7.32 -80.76 -0.59 -0.38 16 22 N -0.20 -3.04 11.80 34.46 0.41 -2.64 16 23 N -0.42 -4.86 6.85 32.34 0.22 -4.64 16 24 H 0.45 3.43 8.96 -190.49 -1.71 1.72 16 25 C 0.06 0.76 7.38 -84.21 -0.62 0.13 16 26 C -0.12 -1.12 10.03 -39.82 -0.40 -1.52 16 27 C -0.09 -0.72 9.96 -39.90 -0.40 -1.12 16 28 C -0.15 -1.41 9.98 -39.89 -0.40 -1.81 16 29 C -0.04 -0.50 9.87 -39.78 -0.39 -0.90 16 30 C -0.11 -1.61 6.34 -105.05 -0.67 -2.28 16 31 C -0.14 -2.98 6.25 -24.00 -0.15 -3.13 16 32 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.87 7.84 -51.93 -0.41 0.46 16 35 H 0.05 0.84 7.82 -51.93 -0.41 0.44 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.41 7.74 8.39 -40.82 -0.34 7.40 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.14 1.83 7.65 -52.49 -0.40 1.43 16 42 H 0.06 1.36 7.98 -51.93 -0.41 0.95 16 43 H 0.05 1.05 7.84 -51.93 -0.41 0.65 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -31.37 354.51 -11.00 -42.38 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.83 Total: 10.69 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -5.08 Total: -3.88 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.51 Total: -60.27 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.37 -11.00 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098319256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.649 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds