Wall clock time and date at job start Tue Mar 31 2020 15:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00123 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99843 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.50237 * 130.84209 * 359.65943 * 9 7 2 11 11 H 1.09009 * 115.85557 * 0.38748 * 10 9 7 12 12 C 1.55843 * 101.05001 * 234.00565 * 10 9 7 13 13 C 1.54221 * 103.56560 * 327.14286 * 12 10 9 14 14 C 1.50242 * 130.83910 * 179.97438 * 9 7 2 15 15 H 1.09004 * 115.85357 * 359.61111 * 14 9 7 16 16 C 1.55843 * 101.05320 * 233.93145 * 14 9 7 17 17 H 1.08998 * 110.62858 * 208.57003 * 16 14 9 18 18 N 1.46503 * 110.62573 * 85.70919 * 16 14 9 19 19 C 1.34770 * 119.99849 * 154.99880 * 18 16 14 20 20 O 1.21613 * 120.00283 * 0.02562 * 19 18 16 21 21 C 1.47389 * 119.99949 * 180.02562 * 19 18 16 22 22 N 1.31568 * 126.82621 * 359.68954 * 21 19 18 23 23 N 1.28383 * 111.96887 * 179.80686 * 22 21 19 24 24 H 0.96998 * 124.37486 * 180.23167 * 23 22 21 25 25 C 1.37053 * 111.25623 * 0.47728 * 23 22 21 26 26 C 1.39117 * 134.72393 * 179.70350 * 25 23 22 27 27 C 1.36685 * 119.78468 * 180.02562 * 26 25 23 28 28 C 1.38903 * 120.88899 * 0.02562 * 27 26 25 29 29 C 1.36711 * 120.52545 * 359.96186 * 28 27 26 30 30 C 1.39190 * 119.51317 * 0.03772 * 29 28 27 31 31 C 1.54852 * 103.44469 * 327.06434 * 16 14 9 32 32 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 33 33 H 1.09001 * 110.62876 * 85.54769 * 12 10 9 34 34 H 1.09007 * 110.62768 * 208.40907 * 12 10 9 35 35 H 1.08990 * 110.64658 * 241.43522 * 13 12 10 36 36 H 1.09002 * 110.49172 * 118.49253 * 13 12 10 37 37 H 0.96999 * 120.00432 * 335.00582 * 18 16 14 38 38 H 1.07999 * 120.11140 * 0.03465 * 26 25 23 39 39 H 1.07998 * 119.55430 * 180.02562 * 27 26 25 40 40 H 1.07998 * 119.73520 * 179.97438 * 28 27 26 41 41 H 1.08001 * 120.24254 * 180.02562 * 29 28 27 42 42 H 1.09002 * 110.62844 * 118.48785 * 31 16 14 43 43 H 1.09006 * 110.62504 * 241.35304 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 -0.1500 -2.6706 0.0068 11 1 -0.8014 -1.7966 0.0057 12 6 -0.2684 -3.6131 1.2423 13 6 1.0672 -4.3842 1.2383 14 6 1.8187 -3.8072 0.0005 15 1 2.9013 -3.9343 -0.0061 16 6 1.0661 -4.3850 -1.2358 17 1 0.8923 -5.4542 -1.1144 18 7 1.8169 -4.1223 -2.4661 19 6 1.6515 -4.9199 -3.5397 20 8 0.8786 -5.8575 -3.4875 21 6 2.4072 -4.6560 -4.7773 22 7 3.2684 -3.6828 -4.9831 23 7 3.7648 -3.7230 -6.1664 24 1 4.4191 -3.0934 -6.5074 25 6 3.2468 -4.7672 -6.8873 26 6 3.4285 -5.2502 -8.1792 27 6 2.7324 -6.3498 -8.5971 28 6 1.8419 -6.9950 -7.7485 29 6 1.6446 -6.5413 -6.4740 30 6 2.3435 -5.4232 -6.0283 31 6 -0.2749 -3.6107 -1.2352 32 1 -0.4850 0.8400 0.0004 33 1 -0.3714 -3.0329 2.1593 34 1 -1.1097 -4.2962 1.1250 35 1 0.8933 -5.4534 1.1178 36 1 1.6252 -4.1857 2.1534 37 1 2.4331 -3.3744 -2.5079 38 1 4.1175 -4.7582 -8.8497 39 1 2.8766 -6.7219 -9.6007 40 1 1.3013 -7.8620 -8.0982 41 1 0.9515 -7.0468 -5.8179 42 1 -0.3828 -3.0288 -2.1506 43 1 -1.1140 -4.2962 -1.1162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098319256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:03 Heat of formation + Delta-G solvation = 79.239312 kcal Electronic energy + Delta-G solvation = -27426.839210 eV Core-core repulsion = 23666.619221 eV Total energy + Delta-G solvation = -3760.219989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.51436 -41.21498 -39.70294 -38.70522 -35.33051 -34.43875 -33.54650 -31.21839 -31.05667 -30.96959 -30.31498 -29.25258 -26.21044 -25.32558 -24.19355 -23.33445 -22.51790 -21.52789 -21.05400 -20.24740 -19.21096 -18.84143 -18.57892 -17.57242 -17.10975 -16.90563 -16.73006 -16.17814 -15.89758 -15.70924 -15.36736 -15.08411 -14.99263 -14.80778 -14.32900 -13.72745 -13.64907 -13.17948 -12.90188 -12.89790 -12.87867 -12.78507 -12.69216 -12.22580 -12.12270 -12.02293 -11.95594 -11.88757 -11.71435 -11.36959 -11.22572 -10.99353 -10.93149 -10.73637 -10.01503 -9.79826 -9.10532 -8.85909 -7.74976 -5.14549 -0.22602 0.36292 0.85055 1.47986 1.50016 1.55778 1.68984 2.16556 2.24394 2.50848 2.81202 3.24283 3.37938 3.45568 3.47821 3.74223 4.01197 4.09402 4.12609 4.25164 4.28272 4.43313 4.46438 4.47801 4.50888 4.64102 4.69677 4.75209 4.84155 4.91967 5.05108 5.10684 5.18026 5.19760 5.21750 5.39152 5.46886 5.51648 5.56461 5.58763 5.70436 5.85087 5.91403 6.09270 6.28684 6.47964 6.76340 7.06907 7.14493 7.73395 8.59402 9.32181 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.003523 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.967512 B = 7944.845500 C = 9273.484020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.067 4.067 3 Si 0.974 3.026 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.280 1.280 7 C -0.215 4.215 8 H 0.083 0.917 9 N -0.611 5.611 10 C 0.140 3.860 11 H 0.116 0.884 12 C -0.130 4.130 13 C -0.117 4.117 14 C 0.125 3.875 15 H 0.100 0.900 16 C 0.138 3.862 17 H 0.094 0.906 18 N -0.691 5.691 19 C 0.599 3.401 20 O -0.566 6.566 21 C -0.028 4.028 22 N -0.212 5.212 23 N -0.397 5.397 24 H 0.463 0.537 25 C 0.054 3.946 26 C -0.113 4.113 27 C -0.080 4.080 28 C -0.130 4.130 29 C -0.074 4.074 30 C -0.138 4.138 31 C -0.134 4.134 32 H 0.245 0.755 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.407 0.593 38 H 0.165 0.835 39 H 0.172 0.828 40 H 0.156 0.844 41 H 0.122 0.878 42 H 0.030 0.970 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.428 -13.102 -15.995 21.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.803 3.197 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.207 1.207 7 C -0.344 4.344 8 H 0.100 0.900 9 N -0.332 5.332 10 C 0.033 3.967 11 H 0.134 0.866 12 C -0.169 4.169 13 C -0.156 4.156 14 C 0.018 3.982 15 H 0.117 0.883 16 C 0.032 3.968 17 H 0.112 0.888 18 N -0.339 5.339 19 C 0.384 3.616 20 O -0.444 6.444 21 C -0.197 4.197 22 N -0.044 5.044 23 N -0.120 5.120 24 H 0.311 0.689 25 C -0.060 4.060 26 C -0.134 4.134 27 C -0.100 4.100 28 C -0.149 4.149 29 C -0.095 4.095 30 C -0.145 4.145 31 C -0.174 4.174 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.182 0.818 39 H 0.189 0.811 40 H 0.174 0.826 41 H 0.140 0.860 42 H 0.049 0.951 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.406 -12.516 -15.380 21.168 hybrid contribution 0.366 1.443 -0.153 1.496 sum 7.773 -11.074 -15.533 20.599 Atomic orbital electron populations 1.69706 1.06154 1.24819 1.59061 1.25418 0.96336 1.00310 1.03873 0.85208 0.77054 0.79480 0.77914 1.20762 1.22582 1.20669 1.19303 0.90694 0.83100 1.41319 0.89953 1.46717 1.02351 0.99598 1.84525 1.23698 0.86645 0.95113 0.91201 0.86629 1.22830 0.97394 0.98011 0.98700 1.22711 0.96188 0.99130 0.97588 1.23397 0.97014 0.84738 0.93046 0.88251 1.22578 0.91805 0.98880 0.83570 0.88829 1.45866 1.44476 1.31129 1.12421 1.16932 0.80897 0.82023 0.81698 1.90713 1.38603 1.31730 1.83358 1.22718 1.03147 0.97567 0.96287 1.72891 1.08908 1.19919 1.02652 1.43108 1.36388 1.25426 1.07076 0.68860 1.19549 0.98278 0.91937 0.96187 1.20283 1.03265 0.98667 0.91153 1.21248 0.93930 0.93655 1.01172 1.21233 0.99688 1.01514 0.92437 1.20482 0.97951 0.93823 0.97194 1.19716 1.02395 1.00045 0.92331 1.23410 0.96640 0.98097 0.99277 0.94519 0.94217 0.90799 0.89723 0.92085 0.75823 0.81759 0.81059 0.82624 0.86030 0.95122 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.66 10.46 21.65 0.23 -55.44 16 2 C -0.07 -3.71 5.50 84.86 0.47 -3.25 16 3 Si 0.97 45.41 29.55 68.60 2.03 47.43 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.22 -11.54 10.59 84.04 0.89 -10.65 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.61 -29.62 2.98 -614.38 -1.83 -31.45 16 10 C 0.14 6.58 4.74 46.38 0.22 6.80 16 11 H 0.12 6.40 5.52 -2.38 -0.01 6.39 16 12 C -0.13 -5.07 6.41 31.99 0.21 -4.86 16 13 C -0.12 -4.02 6.41 32.00 0.21 -3.82 16 14 C 0.13 4.87 5.06 46.24 0.23 5.10 16 15 H 0.10 3.62 8.14 -2.38 -0.02 3.60 16 16 C 0.14 5.27 2.80 46.61 0.13 5.40 16 17 H 0.09 3.41 7.22 -2.39 -0.02 3.39 16 18 N -0.69 -26.38 5.08 -438.20 -2.23 -28.60 16 19 C 0.60 22.99 7.81 86.65 0.68 23.67 16 20 O -0.57 -23.65 16.05 -4.07 -0.07 -23.71 16 21 C -0.03 -0.94 7.32 43.86 0.32 -0.62 16 22 N -0.21 -6.45 11.80 -44.88 -0.53 -6.98 16 23 N -0.40 -8.78 6.85 -51.60 -0.35 -9.13 16 24 H 0.46 6.24 8.96 -220.04 -1.97 4.27 16 25 C 0.05 1.20 7.38 39.18 0.29 1.49 16 26 C -0.11 -1.60 10.03 22.12 0.22 -1.38 16 27 C -0.08 -0.98 9.96 22.07 0.22 -0.76 16 28 C -0.13 -2.17 9.98 22.07 0.22 -1.95 16 29 C -0.07 -1.89 9.87 22.14 0.22 -1.68 16 30 C -0.14 -4.04 6.34 -20.14 -0.13 -4.17 16 31 C -0.13 -5.68 6.25 32.36 0.20 -5.47 16 32 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 2.49 7.84 -2.38 -0.02 2.47 16 35 H 0.08 2.42 7.82 -2.39 -0.02 2.40 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.41 15.87 8.39 -92.71 -0.78 15.10 16 38 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 39 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 40 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 41 H 0.12 3.39 7.65 -2.91 -0.02 3.37 16 42 H 0.03 1.45 7.98 -2.39 -0.02 1.43 16 43 H 0.07 2.74 7.84 -2.38 -0.02 2.72 16 Total: -1.00 -71.81 354.51 0.16 -71.65 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -1.68 Total: 32.40 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 4.59 Total: 3.84 kcal Atomic # 7 Polarization: -126.89 SS G_CDS: -4.71 Total: -131.60 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.07 Total: -23.71 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -71.81 0.16 -71.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098319256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.888 kcal (2) G-P(sol) polarization free energy of solvation -71.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds