Wall clock time and date at job start Tue Mar 31 2020 14:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47283 * 21.91281 * 3 2 1 5 5 C 1.36940 * 120.00007 * 269.99721 * 4 3 2 6 6 H 1.07996 * 120.00081 * 316.63685 * 5 4 3 7 7 C 1.38815 * 119.99854 * 136.64030 * 5 4 3 8 8 N 1.31623 * 119.99869 * 348.17394 * 7 5 4 9 9 Si 1.86790 * 119.99890 * 168.18439 * 7 5 4 10 10 H 1.48501 * 109.47343 * 89.99649 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99655 * 9 7 5 12 12 H 1.48502 * 109.47569 * 329.99442 * 9 7 5 13 13 C 1.46504 * 120.00068 * 90.00134 * 4 3 2 14 14 C 1.50699 * 109.46991 * 47.80018 * 13 4 3 15 15 C 1.38311 * 119.92414 * 265.72017 * 14 13 4 16 16 C 1.38081 * 120.07552 * 179.72953 * 15 14 13 17 17 C 1.38930 * 119.92262 * 0.54181 * 16 15 14 18 18 N 1.39680 * 120.07359 * 179.70547 * 17 16 15 19 19 C 1.46496 * 119.99892 * 185.40789 * 18 17 16 20 20 C 1.46493 * 119.99795 * 5.40780 * 18 17 16 21 21 C 1.38892 * 119.85360 * 359.73740 * 17 16 15 22 22 C 1.38129 * 119.92077 * 359.97438 * 21 17 16 23 23 C 1.50699 * 119.96152 * 179.97438 * 22 21 17 24 24 F 1.39905 * 109.47066 * 6.67822 * 23 22 21 25 25 F 1.39892 * 109.47123 * 126.67307 * 23 22 21 26 26 F 1.39893 * 109.47222 * 246.67561 * 23 22 21 27 27 H 4.40637 * 5.51371 * 180.02562 * 4 1 2 28 28 H 1.09000 * 109.47118 * 261.90879 * 3 2 1 29 29 H 1.09002 * 109.46890 * 141.91481 * 3 2 1 30 30 H 0.96998 * 119.99836 * 185.28471 * 8 7 5 31 31 H 1.09001 * 109.47114 * 167.79873 * 13 4 3 32 32 H 1.09000 * 109.46808 * 287.79797 * 13 4 3 33 33 H 1.08004 * 119.95995 * 359.97438 * 15 14 13 34 34 H 1.07998 * 120.03891 * 180.27476 * 16 15 14 35 35 H 1.09002 * 109.47446 * 90.00151 * 19 18 17 36 36 H 1.08997 * 109.47066 * 210.00032 * 19 18 17 37 37 H 1.09007 * 109.47267 * 330.00172 * 19 18 17 38 38 H 1.08996 * 109.47434 * 5.46684 * 20 18 17 39 39 H 1.09005 * 109.47112 * 125.46511 * 20 18 17 40 40 H 1.09005 * 109.47141 * 245.46569 * 20 18 17 41 41 H 1.07998 * 120.03723 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.2805 -0.5154 5 6 3.3638 -2.3218 0.3439 6 1 3.8629 -2.1455 1.2852 7 6 2.9542 -3.6042 0.0050 8 7 2.1483 -3.7885 -1.0192 9 14 3.5465 -5.0680 1.0027 10 1 2.5966 -5.3263 2.1145 11 1 3.6218 -6.2655 0.1277 12 1 4.8921 -4.7762 1.5590 13 6 3.3793 -1.4476 -1.9503 14 6 4.1793 -0.2780 -2.4631 15 6 3.5317 0.8093 -3.0210 16 6 4.2614 1.8851 -3.4868 17 6 5.6481 1.8695 -3.4050 18 7 6.3897 2.9533 -3.8808 19 6 7.8529 2.8864 -3.9030 20 6 5.7041 4.1569 -4.3577 21 6 6.2956 0.7734 -2.8495 22 6 5.5593 -0.2967 -2.3800 23 6 6.2609 -1.4867 -1.7776 24 9 7.6284 -1.2139 -1.6649 25 9 5.7314 -1.7473 -0.5092 26 9 6.0742 -2.6033 -2.5993 27 1 -1.0497 -0.0003 -0.0003 28 1 3.0093 0.1455 1.0174 29 1 3.0090 0.8097 -0.6339 30 1 1.8009 -4.6738 -1.2098 31 1 3.9350 -2.3700 -2.1192 32 1 2.4267 -1.4956 -2.4778 33 1 2.4538 0.8187 -3.0887 34 1 3.7548 2.7358 -3.9183 35 1 8.1835 2.4756 -4.8570 36 1 8.2644 3.8878 -3.7766 37 1 8.1998 2.2460 -3.0919 38 1 4.6337 4.0617 -4.1755 39 1 6.0870 5.0280 -3.8260 40 1 5.8814 4.2767 -5.4266 41 1 7.3735 0.7584 -2.7839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120066285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:17 Heat of formation + Delta-G solvation = -22.150571 kcal Electronic energy + Delta-G solvation = -29160.442331 eV Core-core repulsion = 24821.676256 eV Total energy + Delta-G solvation = -4338.766076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.36023 -46.98435 -46.58701 -39.65308 -36.90918 -35.27833 -32.32474 -31.66098 -31.31934 -29.88192 -28.49177 -26.72510 -25.84703 -25.08548 -23.78161 -21.75290 -21.44901 -20.05797 -17.89432 -17.75389 -17.55453 -17.25568 -16.60269 -16.15672 -15.64172 -15.17576 -14.96280 -14.39333 -14.16300 -13.93082 -13.88296 -13.61379 -13.43744 -13.31123 -13.26242 -13.05264 -12.82192 -12.73236 -12.72870 -12.58233 -12.28047 -12.05683 -11.83038 -11.56664 -11.28904 -10.97872 -10.81367 -10.79155 -10.36795 -10.18457 -10.00714 -9.63289 -9.26751 -9.09113 -8.79434 -8.47314 -7.13846 -6.54691 -5.83339 -3.39382 1.37805 1.77739 3.05786 3.38751 3.44510 3.46857 3.49021 3.80962 3.89080 3.96623 4.42498 4.53071 4.80951 4.84906 4.98781 5.13144 5.19012 5.23372 5.31051 5.38682 5.43369 5.48481 5.55796 5.58300 5.66521 5.73532 5.81538 5.92859 6.06264 6.27568 6.47013 6.56615 6.64819 6.71752 6.91288 6.99781 7.22204 7.23384 7.39464 7.52304 7.87563 8.53233 8.71681 9.17753 9.74593 10.37487 11.25044 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.005298 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.340915 B = 5283.747109 C = 6682.612600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.153 4.153 3 C 0.235 3.765 4 N -0.563 5.563 5 C -0.256 4.256 6 H 0.062 0.938 7 C 0.026 3.974 8 N -0.887 5.887 9 Si 0.894 3.106 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.199 3.801 14 C -0.088 4.088 15 C -0.071 4.071 16 C -0.170 4.170 17 C 0.194 3.806 18 N -0.642 5.642 19 C 0.095 3.905 20 C 0.094 3.906 21 C -0.157 4.157 22 C -0.122 4.122 23 C 0.498 3.502 24 F -0.197 7.197 25 F -0.135 7.135 26 F -0.181 7.181 27 H 0.198 0.802 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.257 0.743 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.025 13.744 -6.884 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.156 4.156 3 C 0.110 3.890 4 N -0.282 5.282 5 C -0.385 4.385 6 H 0.079 0.921 7 C -0.176 4.176 8 N -0.528 5.528 9 Si 0.723 3.277 10 H -0.211 1.211 11 H -0.214 1.214 12 H -0.199 1.199 13 C 0.074 3.926 14 C -0.092 4.092 15 C -0.090 4.090 16 C -0.192 4.192 17 C 0.095 3.905 18 N -0.357 5.357 19 C -0.048 4.048 20 C -0.049 4.049 21 C -0.179 4.179 22 C -0.125 4.125 23 C 0.443 3.557 24 F -0.179 7.179 25 F -0.115 7.115 26 F -0.162 7.162 27 H 0.215 0.785 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.166 13.639 -7.041 17.386 hybrid contribution -0.018 -1.056 0.485 1.162 sum 8.148 12.583 -6.556 16.362 Atomic orbital electron populations 1.24559 0.95659 1.04442 1.04308 1.25217 0.96159 0.96960 0.97305 1.18226 0.81909 0.90245 0.98665 1.43607 1.72598 1.09515 1.02453 1.18925 1.32458 0.85873 1.01280 0.92069 1.25453 0.96031 0.98923 0.97170 1.69935 1.31730 1.22191 1.28895 0.86432 0.79128 0.82511 0.79675 1.21112 1.21414 1.19862 1.19866 0.95951 0.91981 0.84845 1.20755 0.92245 0.99299 0.96916 1.20886 0.99860 0.92002 0.96271 1.20838 0.91824 1.00309 1.06270 1.17516 0.90743 0.87626 0.94644 1.46131 1.04711 1.14653 1.70160 1.21581 0.79780 1.01996 1.01491 1.21630 0.98445 0.86406 0.98454 1.20362 0.99806 0.93576 1.04202 1.19627 0.94565 0.94361 1.03915 1.18432 0.75585 0.83143 0.78495 1.93079 1.34680 1.93867 1.96273 1.93509 1.84837 1.94257 1.38944 1.93167 1.94779 1.55425 1.72820 0.78453 0.91454 0.91975 0.93317 0.90072 0.94297 0.85363 0.85767 0.93608 0.91826 0.91274 0.90416 0.92893 0.93361 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.54 19.25 29.55 0.57 -4.98 16 2 C -0.15 -3.39 13.68 -37.12 -0.51 -3.90 16 3 C 0.24 5.06 5.98 -6.83 -0.04 5.02 16 4 N -0.56 -13.68 1.99 -177.95 -0.35 -14.03 16 5 C -0.26 -6.85 7.03 -15.06 -0.11 -6.96 16 6 H 0.06 1.66 7.86 -52.49 -0.41 1.24 16 7 C 0.03 0.72 4.99 -17.43 -0.09 0.63 16 8 N -0.89 -25.57 12.16 55.49 0.67 -24.89 16 9 Si 0.89 21.84 29.57 -169.99 -5.03 16.82 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 13 C 0.20 4.61 3.92 -5.19 -0.02 4.59 16 14 C -0.09 -1.68 4.39 -104.59 -0.46 -2.14 16 15 C -0.07 -1.15 8.34 -39.61 -0.33 -1.48 16 16 C -0.17 -2.36 9.27 -39.38 -0.37 -2.72 16 17 C 0.19 2.71 6.54 -83.78 -0.55 2.16 16 18 N -0.64 -7.16 3.41 -187.55 -0.64 -7.80 16 19 C 0.09 0.85 10.35 59.84 0.62 1.47 16 20 C 0.09 0.78 10.59 59.84 0.63 1.41 16 21 C -0.16 -2.43 8.63 -39.38 -0.34 -2.77 16 22 C -0.12 -2.23 5.38 -104.66 -0.56 -2.79 16 23 C 0.50 9.82 2.80 36.01 0.10 9.92 16 24 F -0.20 -3.49 16.00 2.25 0.04 -3.46 16 25 F -0.13 -3.04 12.99 2.25 0.03 -3.01 16 26 F -0.18 -3.77 15.86 2.25 0.04 -3.73 16 27 H 0.20 3.29 7.80 -54.10 -0.42 2.87 16 28 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 29 H 0.06 1.21 5.77 -51.93 -0.30 0.91 16 30 H 0.26 7.20 8.32 -40.82 -0.34 6.86 16 31 H 0.08 2.08 5.10 -51.93 -0.26 1.82 16 32 H 0.04 0.97 8.05 -51.93 -0.42 0.56 16 33 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 34 H 0.12 1.38 5.83 -52.49 -0.31 1.07 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 37 H 0.07 0.65 6.00 -51.93 -0.31 0.33 16 38 H 0.08 0.62 5.39 -51.93 -0.28 0.34 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.13 1.81 5.16 -52.49 -0.27 1.54 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -30.72 348.31 -6.09 -36.81 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.65 Total: 0.58 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.44 Total: -2.53 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.32 Total: -46.72 kcal Atomic # 9 Polarization: -10.30 SS G_CDS: 0.10 Total: -10.20 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.72 -6.09 -36.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120066285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.655 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds