Wall clock time and date at job start Tue Mar 31 2020 14:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47283 * 21.91281 * 3 2 1 5 5 C 1.36940 * 120.00007 * 269.99721 * 4 3 2 6 6 H 1.07996 * 120.00081 * 316.63685 * 5 4 3 7 7 C 1.38815 * 119.99854 * 136.64030 * 5 4 3 8 8 N 1.31623 * 119.99869 * 348.17394 * 7 5 4 9 9 Si 1.86790 * 119.99890 * 168.18439 * 7 5 4 10 10 H 1.48501 * 109.47343 * 89.99649 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99655 * 9 7 5 12 12 H 1.48502 * 109.47569 * 329.99442 * 9 7 5 13 13 C 1.46504 * 120.00068 * 90.00134 * 4 3 2 14 14 C 1.50699 * 109.46991 * 47.80018 * 13 4 3 15 15 C 1.38311 * 119.92414 * 265.72017 * 14 13 4 16 16 C 1.38081 * 120.07552 * 179.72953 * 15 14 13 17 17 C 1.38930 * 119.92262 * 0.54181 * 16 15 14 18 18 N 1.39680 * 120.07359 * 179.70547 * 17 16 15 19 19 C 1.46496 * 119.99892 * 185.40789 * 18 17 16 20 20 C 1.46493 * 119.99795 * 5.40780 * 18 17 16 21 21 C 1.38892 * 119.85360 * 359.73740 * 17 16 15 22 22 C 1.38129 * 119.92077 * 359.97438 * 21 17 16 23 23 C 1.50699 * 119.96152 * 179.97438 * 22 21 17 24 24 F 1.39905 * 109.47066 * 6.67822 * 23 22 21 25 25 F 1.39892 * 109.47123 * 126.67307 * 23 22 21 26 26 F 1.39893 * 109.47222 * 246.67561 * 23 22 21 27 27 H 4.40637 * 5.51371 * 180.02562 * 4 1 2 28 28 H 1.09000 * 109.47118 * 261.90879 * 3 2 1 29 29 H 1.09002 * 109.46890 * 141.91481 * 3 2 1 30 30 H 0.96998 * 119.99836 * 185.28471 * 8 7 5 31 31 H 1.09001 * 109.47114 * 167.79873 * 13 4 3 32 32 H 1.09000 * 109.46808 * 287.79797 * 13 4 3 33 33 H 1.08004 * 119.95995 * 359.97438 * 15 14 13 34 34 H 1.07998 * 120.03891 * 180.27476 * 16 15 14 35 35 H 1.09002 * 109.47446 * 90.00151 * 19 18 17 36 36 H 1.08997 * 109.47066 * 210.00032 * 19 18 17 37 37 H 1.09007 * 109.47267 * 330.00172 * 19 18 17 38 38 H 1.08996 * 109.47434 * 5.46684 * 20 18 17 39 39 H 1.09005 * 109.47112 * 125.46511 * 20 18 17 40 40 H 1.09005 * 109.47141 * 245.46569 * 20 18 17 41 41 H 1.07998 * 120.03723 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.2805 -0.5154 5 6 3.3638 -2.3218 0.3439 6 1 3.8629 -2.1455 1.2852 7 6 2.9542 -3.6042 0.0050 8 7 2.1483 -3.7885 -1.0192 9 14 3.5465 -5.0680 1.0027 10 1 2.5966 -5.3263 2.1145 11 1 3.6218 -6.2655 0.1277 12 1 4.8921 -4.7762 1.5590 13 6 3.3793 -1.4476 -1.9503 14 6 4.1793 -0.2780 -2.4631 15 6 3.5317 0.8093 -3.0210 16 6 4.2614 1.8851 -3.4868 17 6 5.6481 1.8695 -3.4050 18 7 6.3897 2.9533 -3.8808 19 6 7.8529 2.8864 -3.9030 20 6 5.7041 4.1569 -4.3577 21 6 6.2956 0.7734 -2.8495 22 6 5.5593 -0.2967 -2.3800 23 6 6.2609 -1.4867 -1.7776 24 9 7.6284 -1.2139 -1.6649 25 9 5.7314 -1.7473 -0.5092 26 9 6.0742 -2.6033 -2.5993 27 1 -1.0497 -0.0003 -0.0003 28 1 3.0093 0.1455 1.0174 29 1 3.0090 0.8097 -0.6339 30 1 1.8009 -4.6738 -1.2098 31 1 3.9350 -2.3700 -2.1192 32 1 2.4267 -1.4956 -2.4778 33 1 2.4538 0.8187 -3.0887 34 1 3.7548 2.7358 -3.9183 35 1 8.1835 2.4756 -4.8570 36 1 8.2644 3.8878 -3.7766 37 1 8.1998 2.2460 -3.0919 38 1 4.6337 4.0617 -4.1755 39 1 6.0870 5.0280 -3.8260 40 1 5.8814 4.2767 -5.4266 41 1 7.3735 0.7584 -2.7839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120066285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:16 Heat of formation + Delta-G solvation = -37.770746 kcal Electronic energy + Delta-G solvation = -29161.119673 eV Core-core repulsion = 24821.676256 eV Total energy + Delta-G solvation = -4339.443417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.94562 -48.53781 -48.25701 -40.85995 -38.25742 -36.74425 -34.15751 -33.01104 -32.86748 -31.38836 -29.30315 -28.24741 -27.60430 -26.42019 -25.10236 -23.16925 -22.99662 -21.41209 -19.38507 -19.16749 -19.14147 -18.96017 -18.35733 -17.33795 -16.76405 -16.72063 -16.03353 -15.95852 -15.72613 -15.58487 -15.31537 -15.19896 -14.99504 -14.84894 -14.66517 -14.48753 -14.45811 -14.38608 -13.72338 -13.66262 -13.49661 -13.28292 -13.08630 -12.83225 -12.76873 -12.71511 -12.68352 -12.44011 -12.10832 -11.93940 -11.64640 -11.06909 -10.77521 -10.68988 -10.54753 -10.04453 -8.51578 -8.17445 -7.89360 -5.47805 0.11403 0.51197 1.42110 1.44920 1.53322 1.88085 2.14449 2.21482 2.25381 2.52150 2.66908 2.96155 3.29770 3.36482 3.66014 3.88327 3.89937 3.99689 4.04881 4.19805 4.26853 4.41607 4.52503 4.60210 4.69633 4.79411 4.82545 4.85847 4.93927 4.96040 4.97336 5.03631 5.15801 5.34236 5.37170 5.52152 5.68171 5.72114 5.77013 6.34717 6.49105 6.50172 7.04155 7.18449 7.78310 8.37817 9.17107 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.005298 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.340915 B = 5283.747109 C = 6682.612600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.199 4.199 3 C 0.237 3.763 4 N -0.574 5.574 5 C -0.251 4.251 6 H 0.054 0.946 7 C -0.022 4.022 8 N -0.921 5.921 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.270 1.270 13 C 0.218 3.782 14 C -0.115 4.115 15 C -0.069 4.069 16 C -0.160 4.160 17 C 0.208 3.792 18 N -0.641 5.641 19 C 0.087 3.913 20 C 0.085 3.915 21 C -0.162 4.162 22 C -0.129 4.129 23 C 0.494 3.506 24 F -0.185 7.185 25 F -0.157 7.157 26 F -0.193 7.193 27 H 0.233 0.767 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.251 0.749 31 H 0.047 0.953 32 H 0.008 0.992 33 H 0.130 0.870 34 H 0.160 0.840 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.781 16.824 -7.700 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.202 4.202 3 C 0.112 3.888 4 N -0.294 5.294 5 C -0.381 4.381 6 H 0.072 0.928 7 C -0.220 4.220 8 N -0.564 5.564 9 Si 0.772 3.228 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.195 1.195 13 C 0.093 3.907 14 C -0.119 4.119 15 C -0.088 4.088 16 C -0.182 4.182 17 C 0.105 3.895 18 N -0.352 5.352 19 C -0.056 4.056 20 C -0.057 4.057 21 C -0.184 4.184 22 C -0.132 4.132 23 C 0.440 3.560 24 F -0.167 7.167 25 F -0.138 7.138 26 F -0.174 7.174 27 H 0.250 0.750 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.148 0.852 34 H 0.177 0.823 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.958 16.780 -7.865 20.584 hybrid contribution -0.158 -1.787 0.655 1.910 sum 8.800 14.993 -7.210 18.821 Atomic orbital electron populations 1.25427 0.96672 1.02494 1.02533 1.25471 0.96959 0.98714 0.99011 1.18216 0.82110 0.89528 0.98918 1.43741 1.73340 1.09761 1.02561 1.19047 1.31088 0.86777 1.01206 0.92822 1.26008 0.96684 1.00979 0.98353 1.70062 1.33683 1.22038 1.30573 0.85638 0.78811 0.79895 0.78490 1.20639 1.21849 1.19469 1.19383 0.94504 0.92630 0.84172 1.20278 0.92363 0.99056 1.00159 1.20886 1.00112 0.91839 0.95966 1.21095 0.91823 1.00268 1.05036 1.17638 0.91089 0.87782 0.92957 1.46480 1.05699 1.14382 1.68685 1.21783 0.78500 1.03610 1.01705 1.21884 0.98570 0.85576 0.99621 1.20475 1.00435 0.93252 1.04245 1.19522 0.94240 0.94515 1.04897 1.18690 0.76225 0.83534 0.77590 1.93087 1.33686 1.93726 1.96179 1.93440 1.85352 1.94505 1.40467 1.93137 1.94923 1.56340 1.73013 0.75008 0.91461 0.89972 0.93971 0.93466 0.97391 0.85179 0.82317 0.92844 0.89270 0.91839 0.90018 0.91074 0.91796 0.83824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.04 19.25 74.32 1.43 -8.61 16 2 C -0.20 -8.77 13.68 31.12 0.43 -8.34 16 3 C 0.24 10.35 5.98 84.57 0.51 10.85 16 4 N -0.57 -28.86 1.99 -716.92 -1.43 -30.29 16 5 C -0.25 -13.90 7.03 84.03 0.59 -13.31 16 6 H 0.05 3.00 7.86 -2.91 -0.02 2.98 16 7 C -0.02 -1.27 4.99 84.86 0.42 -0.85 16 8 N -0.92 -55.33 12.16 21.65 0.26 -55.06 16 9 Si 0.94 46.25 29.57 68.60 2.03 48.28 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 11 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 12 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.22 10.61 3.92 85.63 0.34 10.95 16 14 C -0.11 -4.44 4.39 -19.84 -0.09 -4.53 16 15 C -0.07 -2.16 8.34 22.25 0.19 -1.98 16 16 C -0.16 -3.94 9.27 22.40 0.21 -3.73 16 17 C 0.21 5.15 6.54 38.21 0.25 5.40 16 18 N -0.64 -11.59 3.41 -747.29 -2.55 -14.14 16 19 C 0.09 1.21 10.35 127.77 1.32 2.54 16 20 C 0.09 1.00 10.59 127.77 1.35 2.36 16 21 C -0.16 -4.72 8.63 22.40 0.19 -4.53 16 22 C -0.13 -4.73 5.38 -19.89 -0.11 -4.83 16 23 C 0.49 19.96 2.80 71.24 0.20 20.16 16 24 F -0.19 -6.53 16.00 44.97 0.72 -5.81 16 25 F -0.16 -7.33 12.99 44.97 0.58 -6.75 16 26 F -0.19 -8.40 15.86 44.97 0.71 -7.69 16 27 H 0.23 7.12 7.80 -4.43 -0.03 7.09 16 28 H 0.07 2.87 8.04 -2.39 -0.02 2.85 16 29 H 0.08 3.18 5.77 -2.39 -0.01 3.17 16 30 H 0.25 14.70 8.32 -92.71 -0.77 13.93 16 31 H 0.05 2.57 5.10 -2.39 -0.01 2.56 16 32 H 0.01 0.43 8.05 -2.39 -0.02 0.41 16 33 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.16 2.79 5.83 -2.91 -0.02 2.78 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.09 0.83 8.07 -2.39 -0.02 0.81 16 37 H 0.06 0.98 6.00 -2.38 -0.01 0.97 16 38 H 0.08 0.90 5.39 -2.39 -0.01 0.89 16 39 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.14 3.71 5.16 -2.91 -0.02 3.70 16 Total: -1.00 -69.06 348.31 8.63 -60.43 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.07 Total: 9.48 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 7.23 Total: 1.55 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -3.71 Total: -99.49 kcal Atomic # 9 Polarization: -22.27 SS G_CDS: 2.02 Total: -20.25 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -69.06 8.63 -60.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120066285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.660 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds