Wall clock time and date at job start Tue Mar 31 2020 14:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35680 * 117.00067 * 2 1 4 4 C 1.38917 * 119.68819 * 180.02562 * 3 2 1 5 5 C 1.38375 * 119.11613 * 180.27710 * 4 3 2 6 6 C 1.50701 * 120.75968 * 179.71942 * 5 4 3 7 7 C 1.53002 * 109.46628 * 90.00171 * 6 5 4 8 8 C 1.50701 * 109.46628 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99972 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99878 * 180.02562 * 8 7 6 11 11 C 1.39937 * 119.99893 * 174.89119 * 10 8 7 12 12 C 1.39298 * 119.94503 * 145.78291 * 11 10 8 13 13 C 1.38489 * 120.42425 * 180.02562 * 12 11 10 14 14 C 1.37678 * 120.32499 * 359.97427 * 13 12 11 15 15 C 1.40736 * 119.88350 * 0.02599 * 14 13 12 16 16 C 1.41415 * 120.20782 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00164 * 205.17213 * 16 15 14 18 18 C 1.39934 * 119.99835 * 25.17325 * 16 15 14 19 19 N 1.30831 * 120.00255 * 16.80223 * 18 16 15 20 20 Si 1.86800 * 119.99865 * 196.80291 * 18 16 15 21 21 H 1.48500 * 109.47043 * 359.97438 * 20 18 16 22 22 H 1.48490 * 109.47254 * 119.99792 * 20 18 16 23 23 H 1.48498 * 109.47016 * 240.00033 * 20 18 16 24 24 C 1.38232 * 119.95053 * 325.50901 * 11 10 8 25 25 C 1.38836 * 118.47995 * 359.44046 * 5 4 3 26 26 C 1.38044 * 119.28809 * 0.56070 * 25 5 4 27 27 N 1.31959 * 120.83556 * 359.70632 * 26 25 5 28 28 H 1.09005 * 109.46917 * 299.99971 * 1 2 3 29 29 H 1.08997 * 109.47164 * 59.99401 * 1 2 3 30 30 H 1.08998 * 109.47048 * 180.02562 * 1 2 3 31 31 H 1.08007 * 120.44129 * 0.02562 * 4 3 2 32 32 H 1.08996 * 109.47116 * 209.99992 * 6 5 4 33 33 H 1.08998 * 109.47128 * 329.99934 * 6 5 4 34 34 H 1.08996 * 109.47226 * 299.99753 * 7 6 5 35 35 H 1.08992 * 109.47157 * 60.00190 * 7 6 5 36 36 H 0.97001 * 120.00143 * 354.88679 * 10 8 7 37 37 H 1.08003 * 119.78606 * 359.97381 * 12 11 10 38 38 H 1.08010 * 119.83077 * 179.97438 * 13 12 11 39 39 H 1.08006 * 120.05854 * 179.97438 * 14 13 12 40 40 H 0.96994 * 119.99890 * 180.02562 * 19 18 16 41 41 H 1.08006 * 120.15854 * 359.97438 * 24 11 10 42 42 H 1.08005 * 120.35136 * 180.30604 * 25 5 4 43 43 H 1.08004 * 119.58053 * 179.72450 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2741 -0.0005 5 6 4.0485 2.5132 0.0053 6 6 5.5512 2.6270 0.0113 7 6 6.0650 2.6696 -1.4292 8 6 7.5677 2.7840 -1.4233 9 8 8.1684 2.8277 -0.3705 10 7 8.2439 2.8389 -2.5878 11 6 9.6269 3.0524 -2.5844 12 6 10.4263 2.4473 -3.5514 13 6 11.7961 2.6514 -3.5570 14 6 12.3829 3.4558 -2.6061 15 6 11.5879 4.0737 -1.6229 16 6 12.1836 4.9009 -0.6427 17 1 11.6982 5.0428 0.3116 18 6 13.4020 5.5354 -0.9092 19 7 13.8283 5.6421 -2.1415 20 14 14.4198 6.2302 0.4946 21 1 13.7221 5.9825 1.7819 22 1 15.7493 5.5692 0.5165 23 1 14.5968 7.6919 0.3015 24 6 10.1969 3.8680 -1.6248 25 6 3.2504 3.6492 -0.0004 26 6 1.8770 3.5097 0.0001 27 7 1.3186 2.3141 0.0002 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 4.0229 0.3696 -0.0014 32 1 5.8443 3.5403 0.5288 33 1 5.9787 1.7655 0.5243 34 1 5.7719 1.7562 -1.9468 35 1 5.6375 3.5311 -1.9421 36 1 7.7720 2.7303 -3.4283 37 1 9.9751 1.8143 -4.3011 38 1 12.4069 2.1771 -4.3110 39 1 13.4517 3.6116 -2.6143 40 1 14.6730 6.0816 -2.3261 41 1 9.5773 4.3415 -0.8775 42 1 3.6993 4.6315 -0.0010 43 1 1.2516 4.3903 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142233213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:57 Heat of formation + Delta-G solvation = -26.000030 kcal Electronic energy + Delta-G solvation = -25514.315623 eV Core-core repulsion = 21717.239363 eV Total energy + Delta-G solvation = -3797.076260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.91533 -39.74088 -38.28921 -37.23471 -34.87749 -34.38078 -33.03713 -31.19248 -30.77469 -29.82411 -28.24092 -27.48916 -25.38443 -25.07603 -23.65684 -22.01261 -21.15339 -20.75382 -19.52364 -18.13475 -17.71617 -17.37961 -16.65695 -16.26326 -16.14704 -15.61152 -15.46797 -15.06216 -14.67535 -14.55796 -14.46718 -14.01712 -13.62398 -13.39558 -13.03305 -12.84752 -12.71869 -12.45626 -12.25449 -12.02797 -11.98105 -11.65384 -11.47172 -11.23375 -11.12891 -11.08753 -10.91899 -10.45421 -10.17500 -9.92276 -9.88318 -9.65565 -9.39813 -9.07542 -8.95761 -8.78112 -7.45406 -6.92352 -6.71511 -4.33811 0.89411 0.99275 2.58057 2.80449 2.82665 3.09891 3.16559 3.19042 3.35288 3.46106 3.65698 3.96787 4.04356 4.46277 4.64360 4.70861 4.83140 4.87502 4.91341 4.97780 5.00009 5.08063 5.19842 5.31453 5.42530 5.48921 5.67129 5.68353 5.73041 5.96718 6.15263 6.22034 6.24443 6.38818 6.76077 6.95808 7.01898 7.04898 7.06837 7.25386 7.55615 7.58045 7.72611 7.97263 8.09316 8.17535 8.25715 8.62284 8.73300 8.94079 8.98589 10.21602 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.002073 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.947891 B =13506.502803 C =14308.262075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.319 3.681 4 C -0.187 4.187 5 C 0.001 3.999 6 C -0.069 4.069 7 C -0.132 4.132 8 C 0.503 3.497 9 O -0.517 6.517 10 N -0.669 5.669 11 C 0.150 3.850 12 C -0.262 4.262 13 C -0.093 4.093 14 C -0.172 4.172 15 C 0.119 3.881 16 C -0.457 4.457 17 H 0.079 0.921 18 C 0.075 3.925 19 N -0.795 5.795 20 Si 0.908 3.092 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.275 1.275 24 C -0.210 4.210 25 C -0.206 4.206 26 C 0.139 3.861 27 N -0.547 5.547 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.142 0.858 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.398 0.602 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.279 0.721 41 H 0.105 0.895 42 H 0.140 0.860 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.135 -5.376 0.709 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.140 3.860 4 C -0.208 4.208 5 C -0.007 4.007 6 C -0.106 4.106 7 C -0.173 4.173 8 C 0.290 3.710 9 O -0.392 6.392 10 N -0.313 5.313 11 C 0.059 3.941 12 C -0.283 4.283 13 C -0.112 4.112 14 C -0.191 4.191 15 C 0.116 3.884 16 C -0.487 4.487 17 H 0.097 0.903 18 C -0.142 4.142 19 N -0.421 5.421 20 Si 0.732 3.268 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.200 1.200 24 C -0.231 4.231 25 C -0.226 4.226 26 C -0.016 4.016 27 N -0.271 5.271 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.160 0.840 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.232 0.768 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.137 0.863 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.157 0.843 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.362 -5.580 1.356 22.120 hybrid contribution 0.827 0.498 -0.047 0.967 sum -20.534 -5.082 1.309 21.194 Atomic orbital electron populations 1.22840 0.77302 1.02872 1.02394 1.86245 1.22862 1.24667 1.87878 1.19818 0.89314 0.84669 0.92189 1.20997 0.91884 0.99319 1.08598 1.20189 0.96536 0.91904 0.92055 1.20407 0.88266 1.05577 0.96385 1.21607 0.92748 1.04593 0.98321 1.20542 0.89430 0.76924 0.84142 1.90765 1.70021 1.47715 1.30742 1.43487 1.07874 1.71499 1.08424 1.17442 0.80417 0.97740 0.98541 1.20049 0.93993 1.10019 1.04264 1.20467 0.93452 0.98900 0.98345 1.21346 1.00047 0.99802 0.97928 1.17506 0.89979 0.89490 0.91463 1.19610 1.03701 1.24300 1.01101 0.90324 1.25908 0.97426 0.94631 0.96247 1.69834 1.19599 1.32915 1.19754 0.86270 0.79754 0.78663 0.82106 1.18345 1.19716 1.20044 1.20959 0.95017 1.04774 1.02363 1.21977 0.94642 0.99735 1.06268 1.22374 0.92818 0.93551 0.92896 1.67292 1.41063 0.98889 1.19857 0.92370 0.92344 0.88687 0.84024 0.89048 0.89271 0.88873 0.88680 0.76801 0.89331 0.89065 0.86327 0.90999 0.87653 0.84257 0.82360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.27 10.48 -18.74 -0.20 -3.47 16 3 C 0.32 3.55 7.49 -17.12 -0.13 3.42 16 4 C -0.19 -1.95 9.75 -39.28 -0.38 -2.33 16 5 C 0.00 0.01 5.17 -104.35 -0.54 -0.53 16 6 C -0.07 -0.74 4.68 -27.88 -0.13 -0.87 16 7 C -0.13 -1.43 5.68 -27.88 -0.16 -1.59 16 8 C 0.50 8.30 7.56 -10.98 -0.08 8.21 16 9 O -0.52 -10.91 13.73 5.55 0.08 -10.83 16 10 N -0.67 -11.44 5.34 -9.91 -0.05 -11.49 16 11 C 0.15 3.36 6.25 -83.77 -0.52 2.84 16 12 C -0.26 -5.74 9.97 -39.09 -0.39 -6.13 16 13 C -0.09 -2.16 10.01 -39.69 -0.40 -2.56 16 14 C -0.17 -4.51 8.69 -38.84 -0.34 -4.84 16 15 C 0.12 3.26 5.57 -106.85 -0.59 2.66 16 16 C -0.46 -12.53 9.05 -37.74 -0.34 -12.87 16 17 H 0.08 2.13 7.90 -52.49 -0.41 1.71 16 18 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 19 N -0.80 -20.70 10.94 55.55 0.61 -20.09 16 20 Si 0.91 19.06 29.59 -169.99 -5.03 14.03 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 C -0.21 -5.39 8.39 -38.69 -0.32 -5.72 16 25 C -0.21 -1.82 9.81 -39.43 -0.39 -2.21 16 26 C 0.14 1.23 11.17 -17.57 -0.20 1.03 16 27 N -0.55 -5.89 9.22 -13.33 -0.12 -6.01 16 28 H 0.06 0.43 8.10 -51.93 -0.42 0.00 16 29 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 32 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 33 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.40 5.19 8.82 -40.82 -0.36 4.83 16 37 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 38 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.12 3.20 6.17 -52.48 -0.32 2.87 16 40 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 41 H 0.11 2.77 6.48 -52.48 -0.34 2.43 16 42 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 43 H 0.16 0.94 8.06 -52.48 -0.42 0.51 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -32.45 370.10 -8.73 -41.18 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.63 Total: 9.40 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -3.96 Total: -18.30 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.43 Total: -37.59 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.12 Total: -14.31 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.45 -8.73 -41.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142233213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.184 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds