Wall clock time and date at job start Tue Mar 31 2020 14:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35680 * 117.00067 * 2 1 4 4 C 1.38917 * 119.68819 * 180.02562 * 3 2 1 5 5 C 1.38375 * 119.11613 * 180.27710 * 4 3 2 6 6 C 1.50701 * 120.75968 * 179.71942 * 5 4 3 7 7 C 1.53002 * 109.46628 * 90.00171 * 6 5 4 8 8 C 1.50701 * 109.46628 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99972 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99878 * 180.02562 * 8 7 6 11 11 C 1.39937 * 119.99893 * 174.89119 * 10 8 7 12 12 C 1.39298 * 119.94503 * 145.78291 * 11 10 8 13 13 C 1.38489 * 120.42425 * 180.02562 * 12 11 10 14 14 C 1.37678 * 120.32499 * 359.97427 * 13 12 11 15 15 C 1.40736 * 119.88350 * 0.02599 * 14 13 12 16 16 C 1.41415 * 120.20782 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00164 * 205.17213 * 16 15 14 18 18 C 1.39934 * 119.99835 * 25.17325 * 16 15 14 19 19 N 1.30831 * 120.00255 * 16.80223 * 18 16 15 20 20 Si 1.86800 * 119.99865 * 196.80291 * 18 16 15 21 21 H 1.48500 * 109.47043 * 359.97438 * 20 18 16 22 22 H 1.48490 * 109.47254 * 119.99792 * 20 18 16 23 23 H 1.48498 * 109.47016 * 240.00033 * 20 18 16 24 24 C 1.38232 * 119.95053 * 325.50901 * 11 10 8 25 25 C 1.38836 * 118.47995 * 359.44046 * 5 4 3 26 26 C 1.38044 * 119.28809 * 0.56070 * 25 5 4 27 27 N 1.31959 * 120.83556 * 359.70632 * 26 25 5 28 28 H 1.09005 * 109.46917 * 299.99971 * 1 2 3 29 29 H 1.08997 * 109.47164 * 59.99401 * 1 2 3 30 30 H 1.08998 * 109.47048 * 180.02562 * 1 2 3 31 31 H 1.08007 * 120.44129 * 0.02562 * 4 3 2 32 32 H 1.08996 * 109.47116 * 209.99992 * 6 5 4 33 33 H 1.08998 * 109.47128 * 329.99934 * 6 5 4 34 34 H 1.08996 * 109.47226 * 299.99753 * 7 6 5 35 35 H 1.08992 * 109.47157 * 60.00190 * 7 6 5 36 36 H 0.97001 * 120.00143 * 354.88679 * 10 8 7 37 37 H 1.08003 * 119.78606 * 359.97381 * 12 11 10 38 38 H 1.08010 * 119.83077 * 179.97438 * 13 12 11 39 39 H 1.08006 * 120.05854 * 179.97438 * 14 13 12 40 40 H 0.96994 * 119.99890 * 180.02562 * 19 18 16 41 41 H 1.08006 * 120.15854 * 359.97438 * 24 11 10 42 42 H 1.08005 * 120.35136 * 180.30604 * 25 5 4 43 43 H 1.08004 * 119.58053 * 179.72450 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2741 -0.0005 5 6 4.0485 2.5132 0.0053 6 6 5.5512 2.6270 0.0113 7 6 6.0650 2.6696 -1.4292 8 6 7.5677 2.7840 -1.4233 9 8 8.1684 2.8277 -0.3705 10 7 8.2439 2.8389 -2.5878 11 6 9.6269 3.0524 -2.5844 12 6 10.4263 2.4473 -3.5514 13 6 11.7961 2.6514 -3.5570 14 6 12.3829 3.4558 -2.6061 15 6 11.5879 4.0737 -1.6229 16 6 12.1836 4.9009 -0.6427 17 1 11.6982 5.0428 0.3116 18 6 13.4020 5.5354 -0.9092 19 7 13.8283 5.6421 -2.1415 20 14 14.4198 6.2302 0.4946 21 1 13.7221 5.9825 1.7819 22 1 15.7493 5.5692 0.5165 23 1 14.5968 7.6919 0.3015 24 6 10.1969 3.8680 -1.6248 25 6 3.2504 3.6492 -0.0004 26 6 1.8770 3.5097 0.0001 27 7 1.3186 2.3141 0.0002 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 4.0229 0.3696 -0.0014 32 1 5.8443 3.5403 0.5288 33 1 5.9787 1.7655 0.5243 34 1 5.7719 1.7562 -1.9468 35 1 5.6375 3.5311 -1.9421 36 1 7.7720 2.7303 -3.4283 37 1 9.9751 1.8143 -4.3011 38 1 12.4069 2.1771 -4.3110 39 1 13.4517 3.6116 -2.6143 40 1 14.6730 6.0816 -2.3261 41 1 9.5773 4.3415 -0.8775 42 1 3.6993 4.6315 -0.0010 43 1 1.2516 4.3903 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142233213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:56 Heat of formation + Delta-G solvation = -46.978945 kcal Electronic energy + Delta-G solvation = -25515.225337 eV Core-core repulsion = 21717.239363 eV Total energy + Delta-G solvation = -3797.985974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67695 -41.16580 -39.17131 -38.84380 -36.25244 -35.61719 -34.80895 -32.06762 -31.74809 -31.57738 -29.83510 -28.16828 -27.26661 -26.15990 -24.38297 -23.32103 -22.73903 -22.15554 -21.00673 -19.50603 -18.91105 -18.14602 -17.95818 -17.38056 -16.98775 -16.90574 -16.79959 -16.55423 -16.37898 -15.57641 -15.33786 -15.10973 -14.98271 -14.64054 -14.40596 -14.21170 -13.93032 -13.57331 -13.47668 -13.25347 -13.01412 -12.95522 -12.89055 -12.78105 -12.62720 -12.18174 -12.13282 -12.01011 -11.94077 -11.51461 -11.15344 -10.88552 -10.74186 -10.65609 -10.48042 -9.49376 -9.39415 -8.74502 -8.60121 -6.36821 0.17162 0.24535 0.87844 1.00403 1.36315 1.46931 1.51713 1.83964 2.12640 2.20713 2.29505 2.73680 2.78517 3.36549 3.58091 3.73733 3.86800 3.97374 4.14399 4.18130 4.22920 4.40438 4.43963 4.46200 4.47413 4.61455 4.63857 4.73267 4.78371 4.88894 4.96546 5.05754 5.09954 5.12327 5.15956 5.26892 5.33789 5.41383 5.49950 5.77296 5.87309 6.08574 6.12008 6.25649 6.35292 6.67562 6.69560 6.86113 6.94178 7.01692 7.37482 8.33283 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.002073 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.947891 B =13506.502803 C =14308.262075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.325 6.325 3 C 0.302 3.698 4 C -0.196 4.196 5 C 0.000 4.000 6 C -0.063 4.063 7 C -0.116 4.116 8 C 0.500 3.500 9 O -0.568 6.568 10 N -0.660 5.660 11 C 0.158 3.842 12 C -0.252 4.252 13 C -0.093 4.093 14 C -0.199 4.199 15 C 0.087 3.913 16 C -0.501 4.501 17 H 0.063 0.937 18 C 0.037 3.963 19 N -0.823 5.823 20 Si 0.981 3.019 21 H -0.265 1.265 22 H -0.260 1.260 23 H -0.262 1.262 24 C -0.236 4.236 25 C -0.204 4.204 26 C 0.136 3.864 27 N -0.560 5.560 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.422 0.578 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.289 0.711 41 H 0.087 0.913 42 H 0.158 0.842 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.701 -5.676 -0.466 23.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.232 6.232 3 C 0.124 3.876 4 C -0.217 4.217 5 C -0.008 4.008 6 C -0.101 4.101 7 C -0.155 4.155 8 C 0.289 3.711 9 O -0.446 6.446 10 N -0.306 5.306 11 C 0.064 3.936 12 C -0.273 4.273 13 C -0.111 4.111 14 C -0.219 4.219 15 C 0.084 3.916 16 C -0.531 4.531 17 H 0.081 0.919 18 C -0.178 4.178 19 N -0.449 5.449 20 Si 0.801 3.199 21 H -0.189 1.189 22 H -0.184 1.184 23 H -0.186 1.186 24 C -0.257 4.257 25 C -0.224 4.224 26 C -0.019 4.019 27 N -0.284 5.284 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.164 0.836 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.260 0.740 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.176 0.824 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -22.977 -5.898 0.134 23.723 hybrid contribution 1.158 0.521 0.251 1.294 sum -21.819 -5.377 0.384 22.476 Atomic orbital electron populations 1.23026 0.75902 1.04501 1.02217 1.86220 1.24354 1.24723 1.87918 1.20014 0.89706 0.85028 0.92854 1.21098 0.91917 0.99764 1.08920 1.20069 0.95759 0.92258 0.92700 1.20287 0.88991 1.04560 0.96267 1.21603 0.87773 1.07209 0.98945 1.21592 0.91621 0.74922 0.82921 1.90758 1.71594 1.49678 1.32600 1.43436 1.05886 1.71155 1.10129 1.17529 0.83127 0.95867 0.97047 1.20496 0.93422 1.09098 1.04312 1.20842 0.94719 0.97724 0.97858 1.21300 0.99390 1.01792 0.99407 1.17861 0.91128 0.90287 0.92335 1.19753 1.05747 1.26526 1.01028 0.91863 1.26701 0.97741 0.94432 0.98910 1.69863 1.20294 1.33346 1.21358 0.85186 0.78014 0.78484 0.78169 1.18889 1.18426 1.18618 1.20942 0.94531 1.06701 1.03576 1.22213 0.94685 1.00194 1.05286 1.22897 0.93319 0.93851 0.91801 1.67340 1.41507 0.99402 1.20194 0.92603 0.92396 0.86231 0.83625 0.90080 0.90528 0.85983 0.85862 0.73998 0.85072 0.86058 0.87907 0.90033 0.89527 0.82407 0.79488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.38 113.37 1.18 1.70 16 2 O -0.32 -6.59 10.48 -89.98 -0.94 -7.54 16 3 C 0.30 6.41 7.49 84.79 0.63 7.04 16 4 C -0.20 -3.85 9.75 22.47 0.22 -3.63 16 5 C 0.00 0.00 5.17 -19.69 -0.10 -0.11 16 6 C -0.06 -1.29 4.68 29.85 0.14 -1.15 16 7 C -0.12 -2.19 5.68 29.85 0.17 -2.02 16 8 C 0.50 15.92 7.56 87.66 0.66 16.58 16 9 O -0.57 -24.48 13.73 -3.06 -0.04 -24.52 16 10 N -0.66 -21.24 5.34 -303.65 -1.62 -22.86 16 11 C 0.16 6.94 6.25 38.10 0.24 7.18 16 12 C -0.25 -10.47 9.97 22.58 0.23 -10.25 16 13 C -0.09 -4.23 10.01 22.20 0.22 -4.01 16 14 C -0.20 -10.74 8.69 22.75 0.20 -10.55 16 15 C 0.09 4.99 5.57 -21.31 -0.12 4.87 16 16 C -0.50 -29.04 9.05 23.46 0.21 -28.83 16 17 H 0.06 3.69 7.90 -2.91 -0.02 3.66 16 18 C 0.04 1.94 5.16 85.25 0.44 2.38 16 19 N -0.82 -43.98 10.94 21.82 0.24 -43.74 16 20 Si 0.98 40.06 29.59 68.60 2.03 42.09 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 24 C -0.24 -12.57 8.39 22.85 0.19 -12.38 16 25 C -0.20 -3.12 9.81 22.37 0.22 -2.90 16 26 C 0.14 2.09 11.17 84.63 0.95 3.04 16 27 N -0.56 -11.18 9.22 -308.95 -2.85 -14.03 16 28 H 0.06 0.77 8.10 -2.38 -0.02 0.75 16 29 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 30 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 32 H 0.08 1.82 8.06 -2.39 -0.02 1.80 16 33 H 0.08 1.75 8.06 -2.39 -0.02 1.73 16 34 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.42 9.47 8.82 -92.71 -0.82 8.65 16 37 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 38 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 39 H 0.10 5.77 6.17 -2.91 -0.02 5.75 16 40 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 41 H 0.09 4.83 6.48 -2.91 -0.02 4.81 16 42 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 43 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -74.93 370.10 2.71 -72.22 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.22 Total: 31.40 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 5.67 Total: -33.02 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -4.23 Total: -80.63 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.98 Total: -32.06 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -74.93 2.71 -72.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142233213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.241 kcal (2) G-P(sol) polarization free energy of solvation -74.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds