Wall clock time and date at job start Tue Mar 31 2020 14:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47045 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47246 * 299.99835 * 3 2 1 6 6 H 1.48504 * 109.47200 * 59.99976 * 3 2 1 7 7 C 1.37881 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99626 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99561 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.46518 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99705 * 170.00083 * 10 9 7 12 12 C 1.53241 * 109.34012 * 187.25440 * 11 10 9 13 13 N 1.47084 * 108.51728 * 306.16626 * 12 11 10 14 14 C 1.34775 * 120.88069 * 231.18557 * 13 12 11 15 15 O 1.21570 * 119.99796 * 183.81364 * 14 13 12 16 16 C 1.47763 * 120.00348 * 3.81727 * 14 13 12 17 17 C 1.40623 * 119.76291 * 130.22602 * 16 14 13 18 18 C 1.35839 * 120.95014 * 180.02562 * 17 16 14 19 19 C 1.40425 * 119.94300 * 0.02562 * 18 17 16 20 20 N 1.33858 * 121.79304 * 180.02562 * 19 18 17 21 21 C 1.31160 * 120.31822 * 180.02562 * 20 19 18 22 22 N 1.32505 * 122.88297 * 359.95264 * 21 20 19 23 23 C 1.31778 * 121.59091 * 0.02562 * 22 21 20 24 24 C 1.40766 * 118.34980 * 0.02562 * 23 22 21 25 25 C 1.38637 * 119.75825 * 310.25111 * 16 14 13 26 26 C 1.47075 * 118.23674 * 51.46210 * 13 12 11 27 27 C 1.46893 * 111.00102 * 294.29760 * 10 9 7 28 28 H 0.96996 * 120.00400 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47501 * 60.00358 * 9 7 2 30 30 H 1.08996 * 109.47494 * 299.99824 * 9 7 2 31 31 H 1.09003 * 109.49896 * 67.29141 * 11 10 9 32 32 H 1.08999 * 109.51621 * 307.22454 * 11 10 9 33 33 H 1.08998 * 109.62893 * 186.46332 * 12 11 10 34 34 H 1.08994 * 109.63318 * 65.87714 * 12 11 10 35 35 H 1.08002 * 119.52319 * 0.02708 * 17 16 14 36 36 H 1.07998 * 120.02829 * 179.97438 * 18 17 16 37 37 H 1.08003 * 118.55704 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.82131 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.36216 * 0.25315 * 25 16 14 40 40 H 1.09003 * 109.63359 * 68.24589 * 26 13 12 41 41 H 1.09001 * 109.63198 * 188.82964 * 26 13 12 42 42 H 1.09009 * 109.49682 * 292.71155 * 27 10 9 43 43 H 1.09003 * 109.49117 * 52.78582 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0018 11 6 1.5211 -4.8933 0.2399 12 6 2.5635 -6.0030 0.4141 13 7 3.4622 -5.9865 -0.7502 14 6 3.7130 -7.1130 -1.4464 15 8 4.5116 -7.0959 -2.3629 16 6 3.0175 -8.3686 -1.0958 17 6 2.3867 -9.1216 -2.1020 18 6 1.7400 -10.2791 -1.8067 19 6 1.6948 -10.7381 -0.4804 20 7 1.0686 -11.8735 -0.1479 21 6 1.0439 -12.2749 1.1005 22 7 1.6220 -11.6013 2.0843 23 6 2.2645 -10.4722 1.8635 24 6 2.3269 -9.9856 0.5441 25 6 2.9910 -8.7955 0.2230 26 6 4.0847 -4.7095 -1.1307 27 6 2.9777 -3.6496 -1.2475 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8902 31 1 0.8801 -5.1267 -0.6103 32 1 0.9149 -4.8189 1.1428 33 1 2.0629 -6.9692 0.4765 34 1 3.1385 -5.8259 1.3230 35 1 2.4170 -8.7747 -3.1244 36 1 1.2603 -10.8455 -2.5913 37 1 0.5301 -13.1950 1.3369 38 1 2.7316 -9.9335 2.6747 39 1 3.4722 -8.2134 0.9950 40 1 4.8031 -4.4104 -0.3674 41 1 4.5903 -4.8200 -2.0901 42 1 2.3164 -3.9002 -2.0771 43 1 3.4282 -2.6728 -1.4233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151769174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:49 Heat of formation + Delta-G solvation = 53.686760 kcal Electronic energy + Delta-G solvation = -26874.464618 eV Core-core repulsion = 23113.136587 eV Total energy + Delta-G solvation = -3761.328031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77697 -40.27647 -37.99808 -37.29594 -34.79535 -34.38057 -32.49738 -31.93667 -31.48666 -30.35165 -28.34339 -26.11614 -25.39575 -24.86674 -23.39256 -22.92932 -22.18243 -21.11651 -19.56700 -18.95711 -18.13383 -17.26170 -16.79177 -16.42394 -15.79819 -15.54435 -15.29735 -15.07114 -14.83422 -14.56731 -14.51147 -14.36027 -13.91419 -13.78066 -13.62242 -13.29243 -12.96050 -12.66261 -12.27480 -12.19212 -11.99664 -11.53671 -11.45682 -11.34358 -11.23963 -10.93050 -10.83790 -10.66831 -10.63019 -10.02518 -9.91300 -9.69150 -9.64003 -9.33073 -8.81625 -8.62490 -8.51486 -7.42832 -6.11487 -4.13604 -0.32394 0.19174 1.34799 2.20574 2.69276 2.98268 3.25791 3.33777 3.37767 3.62510 3.68344 3.73081 3.91161 4.06742 4.20745 4.34386 4.52640 4.62704 4.69364 4.87272 5.08684 5.14874 5.21548 5.23618 5.27966 5.34456 5.40812 5.49656 5.52987 5.69264 5.76302 5.86652 5.88911 5.91332 6.10154 6.13051 6.27736 6.42760 6.57057 6.59365 7.13773 7.19805 7.33054 7.66762 7.68082 7.93009 8.00407 8.04443 8.40095 8.93880 9.51401 10.99350 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021377 B = 0.002629 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.510335 B =10647.893619 C =11294.707815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.065 0.935 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.101 3.899 13 N -0.597 5.597 14 C 0.555 3.445 15 O -0.537 6.537 16 C -0.115 4.115 17 C -0.037 4.037 18 C -0.104 4.104 19 C 0.171 3.829 20 N -0.508 5.508 21 C 0.302 3.698 22 N -0.529 5.529 23 C 0.209 3.791 24 C -0.172 4.172 25 C -0.041 4.041 26 C 0.115 3.885 27 C 0.051 3.949 28 H 0.262 0.738 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.027 0.973 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.197 0.803 38 H 0.180 0.820 39 H 0.148 0.852 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.026 0.974 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.863 -21.520 1.580 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.090 4.090 12 C -0.021 4.021 13 N -0.329 5.329 14 C 0.343 3.657 15 O -0.415 6.415 16 C -0.118 4.118 17 C -0.059 4.059 18 C -0.122 4.122 19 C 0.043 3.957 20 N -0.221 5.221 21 C 0.014 3.986 22 N -0.242 5.242 23 C 0.029 3.971 24 C -0.176 4.176 25 C -0.062 4.062 26 C -0.007 4.007 27 C -0.078 4.078 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.214 0.786 38 H 0.197 0.803 39 H 0.165 0.835 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.044 0.956 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.907 -22.214 1.550 22.608 hybrid contribution 0.027 1.617 -0.739 1.778 sum 3.933 -20.596 0.812 20.984 Atomic orbital electron populations 1.69961 1.06106 1.26825 1.50786 1.24998 0.94867 0.99412 0.95295 0.86438 0.80073 0.83333 0.77563 1.19596 1.21087 1.20977 1.21164 0.93526 0.89811 1.50357 0.91705 1.19733 0.89968 0.87170 0.96229 1.62108 1.27917 1.02522 1.33487 1.22393 0.94753 0.90766 1.01086 1.22257 0.92105 0.99629 0.88159 1.48195 1.46138 1.08544 1.30068 1.18209 0.82113 0.83177 0.82233 1.90801 1.35232 1.85090 1.30362 1.20053 1.00988 0.96715 0.94065 1.20978 0.92657 0.92626 0.99623 1.20669 1.00537 0.96524 0.94486 1.19052 0.92313 0.90244 0.94113 1.68789 1.18152 1.13884 1.21285 1.24999 0.92016 0.98105 0.83525 1.68376 1.10432 1.08257 1.37119 1.23818 0.88999 0.89968 0.94276 1.19478 1.03396 0.98229 0.96502 1.21476 0.95239 0.93775 0.95729 1.22037 0.95887 0.81080 1.01655 1.22440 0.95055 0.99187 0.91164 0.92882 0.99075 0.95012 0.95436 0.89914 0.89766 0.90093 0.83956 0.83566 0.78632 0.80342 0.83475 0.90486 0.89184 0.95608 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.51 -13.59 8.41 -34.44 -0.29 -13.88 16 8 H 0.06 1.70 7.12 -52.49 -0.37 1.33 16 9 C 0.19 4.75 4.72 -4.97 -0.02 4.73 16 10 N -0.54 -10.49 4.62 -235.46 -1.09 -11.58 16 11 C 0.04 0.62 5.62 -3.70 -0.02 0.60 16 12 C 0.10 1.22 5.41 -3.60 -0.02 1.20 16 13 N -0.60 -8.20 3.00 -173.32 -0.52 -8.72 16 14 C 0.56 7.69 7.23 -12.37 -0.09 7.60 16 15 O -0.54 -9.12 16.50 5.30 0.09 -9.03 16 16 C -0.12 -1.27 5.04 -104.96 -0.53 -1.80 16 17 C -0.04 -0.38 9.61 -39.54 -0.38 -0.76 16 18 C -0.10 -0.99 9.97 -39.62 -0.40 -1.39 16 19 C 0.17 1.79 6.62 -84.74 -0.56 1.23 16 20 N -0.51 -5.34 10.44 -12.52 -0.13 -5.47 16 21 C 0.30 2.67 12.22 -92.08 -1.13 1.54 16 22 N -0.53 -4.82 10.39 -14.12 -0.15 -4.96 16 23 C 0.21 1.63 11.16 -16.62 -0.19 1.45 16 24 C -0.17 -1.57 5.74 -106.85 -0.61 -2.19 16 25 C -0.04 -0.36 7.15 -38.77 -0.28 -0.64 16 26 C 0.12 1.73 6.62 -3.37 -0.02 1.71 16 27 C 0.05 0.91 5.47 -3.46 -0.02 0.89 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 30 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 1.25 7.99 -51.93 -0.41 0.84 16 33 H 0.08 0.83 4.68 -51.93 -0.24 0.59 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.20 1.08 8.06 -52.48 -0.42 0.65 16 38 H 0.18 0.76 8.06 -52.48 -0.42 0.33 16 39 H 0.15 0.99 6.97 -52.49 -0.37 0.63 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 1.35 7.08 -51.93 -0.37 0.98 16 42 H 0.03 0.49 8.14 -51.92 -0.42 0.06 16 43 H 0.10 1.92 6.67 -51.93 -0.35 1.58 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -32.85 355.27 -10.84 -43.69 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.46 Total: -1.80 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -4.65 Total: 1.74 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -1.15 Total: -55.86 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.85 -10.84 -43.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151769174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.379 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds