Wall clock time and date at job start Tue Mar 31 2020 14:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47045 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47246 * 299.99835 * 3 2 1 6 6 H 1.48504 * 109.47200 * 59.99976 * 3 2 1 7 7 C 1.37881 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99626 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99561 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.46518 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99705 * 170.00083 * 10 9 7 12 12 C 1.53241 * 109.34012 * 187.25440 * 11 10 9 13 13 N 1.47084 * 108.51728 * 306.16626 * 12 11 10 14 14 C 1.34775 * 120.88069 * 231.18557 * 13 12 11 15 15 O 1.21570 * 119.99796 * 183.81364 * 14 13 12 16 16 C 1.47763 * 120.00348 * 3.81727 * 14 13 12 17 17 C 1.40623 * 119.76291 * 130.22602 * 16 14 13 18 18 C 1.35839 * 120.95014 * 180.02562 * 17 16 14 19 19 C 1.40425 * 119.94300 * 0.02562 * 18 17 16 20 20 N 1.33858 * 121.79304 * 180.02562 * 19 18 17 21 21 C 1.31160 * 120.31822 * 180.02562 * 20 19 18 22 22 N 1.32505 * 122.88297 * 359.95264 * 21 20 19 23 23 C 1.31778 * 121.59091 * 0.02562 * 22 21 20 24 24 C 1.40766 * 118.34980 * 0.02562 * 23 22 21 25 25 C 1.38637 * 119.75825 * 310.25111 * 16 14 13 26 26 C 1.47075 * 118.23674 * 51.46210 * 13 12 11 27 27 C 1.46893 * 111.00102 * 294.29760 * 10 9 7 28 28 H 0.96996 * 120.00400 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47501 * 60.00358 * 9 7 2 30 30 H 1.08996 * 109.47494 * 299.99824 * 9 7 2 31 31 H 1.09003 * 109.49896 * 67.29141 * 11 10 9 32 32 H 1.08999 * 109.51621 * 307.22454 * 11 10 9 33 33 H 1.08998 * 109.62893 * 186.46332 * 12 11 10 34 34 H 1.08994 * 109.63318 * 65.87714 * 12 11 10 35 35 H 1.08002 * 119.52319 * 0.02708 * 17 16 14 36 36 H 1.07998 * 120.02829 * 179.97438 * 18 17 16 37 37 H 1.08003 * 118.55704 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.82131 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.36216 * 0.25315 * 25 16 14 40 40 H 1.09003 * 109.63359 * 68.24589 * 26 13 12 41 41 H 1.09001 * 109.63198 * 188.82964 * 26 13 12 42 42 H 1.09009 * 109.49682 * 292.71155 * 27 10 9 43 43 H 1.09003 * 109.49117 * 52.78582 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0018 11 6 1.5211 -4.8933 0.2399 12 6 2.5635 -6.0030 0.4141 13 7 3.4622 -5.9865 -0.7502 14 6 3.7130 -7.1130 -1.4464 15 8 4.5116 -7.0959 -2.3629 16 6 3.0175 -8.3686 -1.0958 17 6 2.3867 -9.1216 -2.1020 18 6 1.7400 -10.2791 -1.8067 19 6 1.6948 -10.7381 -0.4804 20 7 1.0686 -11.8735 -0.1479 21 6 1.0439 -12.2749 1.1005 22 7 1.6220 -11.6013 2.0843 23 6 2.2645 -10.4722 1.8635 24 6 2.3269 -9.9856 0.5441 25 6 2.9910 -8.7955 0.2230 26 6 4.0847 -4.7095 -1.1307 27 6 2.9777 -3.6496 -1.2475 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8902 31 1 0.8801 -5.1267 -0.6103 32 1 0.9149 -4.8189 1.1428 33 1 2.0629 -6.9692 0.4765 34 1 3.1385 -5.8259 1.3230 35 1 2.4170 -8.7747 -3.1244 36 1 1.2603 -10.8455 -2.5913 37 1 0.5301 -13.1950 1.3369 38 1 2.7316 -9.9335 2.6747 39 1 3.4722 -8.2134 0.9950 40 1 4.8031 -4.4104 -0.3674 41 1 4.5903 -4.8200 -2.0901 42 1 2.3164 -3.9002 -2.0771 43 1 3.4282 -2.6728 -1.4233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151769174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:48 Heat of formation + Delta-G solvation = 32.356362 kcal Electronic energy + Delta-G solvation = -26875.389573 eV Core-core repulsion = 23113.136587 eV Total energy + Delta-G solvation = -3762.252986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.49120 -41.32959 -39.18745 -38.26817 -36.10080 -35.25283 -34.39791 -32.68356 -32.52038 -31.38430 -29.94083 -27.49622 -26.37453 -25.73019 -24.58479 -24.06817 -23.41347 -22.42946 -20.68993 -19.71483 -19.04149 -18.50636 -18.00484 -17.80811 -16.78131 -16.69060 -16.42914 -16.08898 -15.95794 -15.94953 -15.50276 -15.35431 -15.22675 -15.02754 -14.57329 -14.30823 -14.12482 -14.00453 -13.69699 -13.21645 -13.07104 -12.86257 -12.76206 -12.60806 -12.43095 -12.36562 -12.20470 -12.13379 -12.11576 -11.75195 -11.33656 -11.01993 -10.62590 -10.43002 -10.31163 -9.86376 -9.51895 -9.08142 -8.21063 -6.30690 -0.99197 -0.53648 0.66276 1.32155 1.42062 1.43394 1.56090 1.70791 2.02733 2.40543 2.93210 3.03579 3.10983 3.12528 3.20461 3.24658 3.31791 3.48725 3.81721 3.91753 3.93633 4.03834 4.19526 4.24188 4.24596 4.40801 4.52185 4.55674 4.59324 4.68703 4.74035 4.79929 4.82530 4.93100 4.99625 5.07221 5.16547 5.22208 5.26964 5.38192 5.44265 5.64193 5.91679 6.02627 6.16077 6.31540 6.56709 6.85476 6.92580 7.01943 7.39390 8.90261 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021377 B = 0.002629 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.510335 B =10647.893619 C =11294.707815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.521 4.521 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.536 5.536 11 C 0.035 3.965 12 C 0.112 3.888 13 N -0.600 5.600 14 C 0.560 3.440 15 O -0.573 6.573 16 C -0.137 4.137 17 C -0.041 4.041 18 C -0.107 4.107 19 C 0.154 3.846 20 N -0.533 5.533 21 C 0.303 3.697 22 N -0.544 5.544 23 C 0.221 3.779 24 C -0.182 4.182 25 C -0.019 4.019 26 C 0.127 3.873 27 C 0.055 3.945 28 H 0.264 0.736 29 H -0.043 1.043 30 H 0.011 0.989 31 H 0.015 0.985 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.142 0.858 36 H 0.156 0.844 37 H 0.223 0.777 38 H 0.219 0.781 39 H 0.176 0.824 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.009 0.991 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.101 -22.600 3.425 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.082 3.918 10 N -0.260 5.260 11 C -0.094 4.094 12 C -0.010 4.010 13 N -0.331 5.331 14 C 0.350 3.650 15 O -0.454 6.454 16 C -0.141 4.141 17 C -0.063 4.063 18 C -0.126 4.126 19 C 0.027 3.973 20 N -0.247 5.247 21 C 0.015 3.985 22 N -0.257 5.257 23 C 0.041 3.959 24 C -0.186 4.186 25 C -0.040 4.040 26 C 0.005 3.995 27 C -0.074 4.074 28 H 0.073 0.927 29 H -0.025 1.025 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.160 0.840 36 H 0.174 0.826 37 H 0.239 0.761 38 H 0.235 0.765 39 H 0.193 0.807 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.028 0.972 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.149 -23.322 3.406 24.125 hybrid contribution -0.421 1.837 -1.279 2.277 sum 4.728 -21.485 2.127 22.102 Atomic orbital electron populations 1.70086 1.07756 1.27820 1.51926 1.25895 0.95679 1.03180 0.94890 0.85360 0.79163 0.78729 0.77536 1.18443 1.20850 1.20493 1.21497 0.93784 0.90870 1.49748 0.91449 1.19375 0.90028 0.88838 0.93537 1.62031 1.26931 1.02987 1.34080 1.22551 0.95936 0.90041 1.00874 1.22341 0.91185 0.99237 0.88230 1.48238 1.46220 1.08069 1.30590 1.18546 0.81433 0.83795 0.81255 1.90779 1.36894 1.85790 1.31896 1.19864 1.02745 0.96062 0.95384 1.20999 0.92838 0.92826 0.99645 1.20756 1.00602 0.96402 0.94846 1.19337 0.92525 0.90655 0.94773 1.68833 1.19315 1.14376 1.22204 1.25594 0.91172 0.98655 0.83079 1.68497 1.11173 1.08965 1.37080 1.24482 0.87511 0.89326 0.94560 1.19604 1.03652 0.98324 0.97007 1.21693 0.93681 0.93378 0.95252 1.21808 0.94629 0.80839 1.02254 1.22376 0.95407 0.99633 0.90001 0.92748 1.02535 0.97087 0.96691 0.89160 0.86922 0.87730 0.84047 0.82628 0.76115 0.76491 0.80670 0.89183 0.89262 0.97234 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.03 13.29 21.45 0.28 -54.74 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.52 -28.17 8.41 25.60 0.22 -27.95 16 8 H 0.07 3.54 7.12 -2.92 -0.02 3.52 16 9 C 0.21 10.55 4.72 85.55 0.40 10.95 16 10 N -0.54 -21.07 4.62 -898.86 -4.15 -25.22 16 11 C 0.03 1.07 5.62 86.38 0.49 1.56 16 12 C 0.11 2.39 5.41 86.35 0.47 2.85 16 13 N -0.60 -15.42 3.00 -820.53 -2.46 -17.89 16 14 C 0.56 14.80 7.23 86.76 0.63 15.43 16 15 O -0.57 -19.25 16.50 -3.94 -0.06 -19.32 16 16 C -0.14 -2.80 5.04 -20.08 -0.10 -2.90 16 17 C -0.04 -0.81 9.61 22.30 0.21 -0.60 16 18 C -0.11 -1.98 9.97 22.25 0.22 -1.75 16 19 C 0.15 3.00 6.62 40.29 0.27 3.26 16 20 N -0.53 -10.43 10.44 -193.53 -2.02 -12.45 16 21 C 0.30 4.70 12.22 180.86 2.21 6.92 16 22 N -0.54 -8.31 10.39 -198.60 -2.06 -10.37 16 23 C 0.22 2.62 11.16 85.32 0.95 3.57 16 24 C -0.18 -2.81 5.74 -21.31 -0.12 -2.93 16 25 C -0.02 -0.28 7.15 22.80 0.16 -0.11 16 26 C 0.13 3.70 6.62 86.50 0.57 4.27 16 27 C 0.05 2.01 5.47 86.54 0.47 2.48 16 28 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 29 H -0.04 -2.43 8.12 -2.39 -0.02 -2.45 16 30 H 0.01 0.60 7.97 -2.39 -0.02 0.58 16 31 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 2.64 7.99 -2.39 -0.02 2.62 16 33 H 0.11 1.81 4.68 -2.39 -0.01 1.79 16 34 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.22 1.93 8.06 -2.91 -0.02 1.90 16 38 H 0.22 0.69 8.06 -2.91 -0.02 0.67 16 39 H 0.18 1.49 6.97 -2.91 -0.02 1.47 16 40 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.09 2.65 7.08 -2.39 -0.02 2.63 16 42 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 43 H 0.08 3.25 6.67 -2.39 -0.02 3.23 16 Total: -1.00 -72.99 355.27 0.09 -72.90 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.04 Total: 6.45 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 7.51 Total: 15.60 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -10.42 Total: -120.67 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.06 Total: -19.32 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -72.99 0.09 -72.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151769174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.252 kcal (2) G-P(sol) polarization free energy of solvation -72.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds