Wall clock time and date at job start Tue Mar 31 2020 14:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00030 * 2 1 4 4 H 1.48496 * 109.47364 * 239.99881 * 3 2 1 5 5 H 1.48502 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46885 * 119.99988 * 3 2 1 7 7 C 1.37876 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99920 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47485 * 175.18581 * 9 7 2 11 11 C 1.46895 * 110.99876 * 295.42956 * 10 9 7 12 12 C 1.53241 * 109.34065 * 187.25165 * 11 10 9 13 13 N 1.47080 * 108.51880 * 306.16657 * 12 11 10 14 14 C 1.34774 * 120.87880 * 231.18514 * 13 12 11 15 15 O 1.21553 * 120.00150 * 184.88551 * 14 13 12 16 16 C 1.47860 * 120.00188 * 4.88723 * 14 13 12 17 17 C 1.38874 * 121.07410 * 325.50851 * 16 14 13 18 18 C 1.39286 * 119.64384 * 179.97438 * 17 16 14 19 19 N 1.31019 * 121.76413 * 359.70937 * 18 17 16 20 20 C 1.33377 * 121.80058 * 0.57643 * 19 18 17 21 21 C 1.41031 * 121.06295 * 179.72115 * 20 19 18 22 22 C 1.36510 * 118.23379 * 179.72825 * 21 20 19 23 23 C 1.39349 * 120.00273 * 359.97370 * 22 21 20 24 24 N 1.31197 * 121.59618 * 0.02583 * 23 22 21 25 25 C 1.33256 * 121.31561 * 359.97438 * 24 23 22 26 26 C 1.47074 * 118.23911 * 51.45541 * 13 12 11 27 27 C 1.46905 * 110.99829 * 59.72116 * 10 9 7 28 28 H 0.97006 * 120.00150 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47494 * 55.18058 * 9 7 2 30 30 H 1.09003 * 109.47088 * 295.18140 * 9 7 2 31 31 H 1.09000 * 109.50067 * 67.28869 * 11 10 9 32 32 H 1.09007 * 109.50927 * 307.21755 * 11 10 9 33 33 H 1.08995 * 109.63101 * 186.45604 * 12 11 10 34 34 H 1.08997 * 109.62917 * 65.87363 * 12 11 10 35 35 H 1.08001 * 120.17378 * 359.97438 * 17 16 14 36 36 H 1.08007 * 119.12152 * 180.02562 * 18 17 16 37 37 H 1.08004 * 120.88698 * 359.70366 * 21 20 19 38 38 H 1.08002 * 119.99649 * 180.02562 * 22 21 20 39 39 H 1.08006 * 119.20364 * 180.02562 * 23 22 21 40 40 H 1.09005 * 109.62999 * 68.25596 * 26 13 12 41 41 H 1.08997 * 109.63177 * 188.83385 * 26 13 12 42 42 H 1.08999 * 109.49623 * 292.71675 * 27 10 9 43 43 H 1.09008 * 109.49255 * 52.78837 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2014 -3.6132 -0.1183 11 6 2.8994 -3.5766 -1.4103 12 6 3.7421 -4.8468 -1.5680 13 7 4.6163 -4.9763 -0.3923 14 6 5.9419 -5.1737 -0.5344 15 8 6.6360 -5.3672 0.4445 16 6 6.5520 -5.1548 -1.8812 17 6 5.8631 -5.6356 -2.9870 18 6 6.4662 -5.6030 -4.2421 19 7 7.6730 -5.1231 -4.4151 20 6 8.3940 -4.6503 -3.3975 21 6 9.6940 -4.1426 -3.6006 22 6 10.3782 -3.6679 -2.5189 23 6 9.7894 -3.6928 -1.2562 24 7 8.5798 -4.1659 -1.0710 25 6 7.8601 -4.6437 -2.0856 26 6 4.0046 -4.8909 0.9425 27 6 3.1525 -3.6132 1.0013 28 1 -0.4851 0.8401 -0.0004 29 1 0.5615 -2.5199 -0.8456 30 1 0.6903 -2.5957 0.9280 31 1 3.5490 -2.7021 -1.4483 32 1 2.1687 -3.5224 -2.2174 33 1 4.3498 -4.7734 -2.4698 34 1 3.0867 -5.7151 -1.6344 35 1 4.8651 -6.0326 -2.8743 36 1 5.9226 -5.9787 -5.0964 37 1 10.1366 -4.1300 -4.5857 38 1 11.3756 -3.2722 -2.6420 39 1 10.3423 -3.3136 -0.4094 40 1 3.3739 -5.7635 1.1128 41 1 4.7859 -4.8467 1.7012 42 1 3.7984 -2.7381 0.9298 43 1 2.6051 -3.5856 1.9436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154301977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:51 Heat of formation + Delta-G solvation = 72.984945 kcal Electronic energy + Delta-G solvation = -27576.481603 eV Core-core repulsion = 23815.990404 eV Total energy + Delta-G solvation = -3760.491199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61467 -39.81263 -38.05607 -37.48352 -34.69114 -34.05998 -32.41769 -31.72133 -31.10017 -30.35990 -28.28292 -26.02936 -25.08169 -24.58539 -23.76597 -22.95617 -22.16355 -20.58623 -19.41039 -19.08165 -17.88333 -17.26999 -16.56565 -16.37768 -15.69014 -15.46297 -15.10265 -14.91187 -14.75382 -14.63567 -14.45831 -14.15642 -13.67222 -13.56415 -13.35251 -13.26772 -12.84428 -12.69913 -12.27696 -11.94096 -11.88748 -11.21916 -11.18104 -11.09605 -10.92280 -10.82284 -10.66416 -10.64523 -10.28096 -10.02318 -9.89770 -9.69385 -9.21735 -9.10073 -8.99651 -8.49648 -8.45984 -7.31575 -6.09811 -4.19256 -0.22671 0.33129 1.45612 2.54249 2.83225 3.11223 3.24463 3.29549 3.32737 3.76848 3.85469 4.02172 4.13533 4.30721 4.35378 4.44465 4.56150 4.80877 4.84173 4.92533 5.10673 5.20488 5.22989 5.24340 5.39858 5.44563 5.55703 5.56921 5.65865 5.74216 5.83265 5.88138 5.97210 6.05072 6.32081 6.35327 6.55560 6.66451 6.70164 7.15233 7.43717 7.43756 7.47315 7.65344 7.81690 7.91730 8.12817 8.20437 8.24505 8.90268 9.48404 10.95372 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.003641 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.390333 B = 7688.780564 C = 8334.750838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.553 4.553 8 H 0.055 0.945 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.049 3.951 12 C 0.078 3.922 13 N -0.598 5.598 14 C 0.558 3.442 15 O -0.510 6.510 16 C -0.046 4.046 17 C -0.143 4.143 18 C 0.131 3.869 19 N -0.455 5.455 20 C 0.075 3.925 21 C -0.045 4.045 22 C -0.160 4.160 23 C 0.135 3.865 24 N -0.440 5.440 25 C 0.112 3.888 26 C 0.118 3.882 27 C 0.049 3.951 28 H 0.264 0.736 29 H 0.036 0.964 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.166 0.834 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.562 -11.547 -8.446 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.592 4.592 8 H 0.073 0.927 9 C 0.063 3.937 10 N -0.264 5.264 11 C -0.080 4.080 12 C -0.044 4.044 13 N -0.331 5.331 14 C 0.344 3.656 15 O -0.386 6.386 16 C -0.058 4.058 17 C -0.164 4.164 18 C -0.042 4.042 19 N -0.163 5.163 20 C -0.049 4.049 21 C -0.071 4.071 22 C -0.181 4.181 23 C -0.038 4.038 24 N -0.147 5.147 25 C -0.012 4.012 26 C -0.004 4.004 27 C -0.080 4.080 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.185 0.815 36 H 0.190 0.810 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.183 0.817 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 15.472 -11.957 -7.841 21.068 hybrid contribution 0.769 1.968 -0.137 2.118 sum 16.242 -9.988 -7.978 20.669 Atomic orbital electron populations 1.69921 1.05979 1.27052 1.49826 1.24930 0.94744 0.99097 0.94745 0.86729 0.79734 0.83328 0.78694 1.20345 1.21061 1.20196 1.21698 0.93226 0.92142 1.52181 0.92706 1.19761 0.90644 0.85271 0.98035 1.62517 1.16558 1.46990 1.00329 1.22235 0.96788 0.94825 0.94175 1.22869 0.93067 1.00143 0.88311 1.48060 1.05893 1.70546 1.08644 1.17820 0.81852 0.78193 0.87719 1.90792 1.60908 1.47869 1.38986 1.20380 0.92722 0.97755 0.94945 1.23056 1.01418 0.99243 0.92729 1.23068 0.90638 0.93834 0.96632 1.67720 1.07177 1.08500 1.32950 1.19600 0.95878 0.99908 0.89496 1.21304 0.91375 0.94083 1.00349 1.22051 1.01892 1.00667 0.93522 1.23249 0.90842 0.92888 0.96845 1.68108 1.06563 1.07818 1.32232 1.19336 0.93918 0.97885 0.90088 1.21977 0.96400 0.99029 0.82980 1.22350 0.94525 0.95122 0.95997 0.92662 0.94625 0.95155 0.93978 0.90190 0.88418 0.90275 0.81467 0.80995 0.83359 0.83656 0.81713 0.90989 0.89344 0.93818 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.55 -14.91 7.76 -34.44 -0.27 -15.17 16 8 H 0.05 1.50 5.88 -52.48 -0.31 1.19 16 9 C 0.19 4.64 5.11 -4.98 -0.03 4.62 16 10 N -0.54 -10.88 4.83 -235.46 -1.14 -12.02 16 11 C 0.05 0.88 5.24 -3.70 -0.02 0.86 16 12 C 0.08 1.07 5.17 -3.60 -0.02 1.05 16 13 N -0.60 -9.48 3.00 -173.30 -0.52 -10.00 16 14 C 0.56 9.47 7.35 -12.32 -0.09 9.38 16 15 O -0.51 -10.19 15.51 5.32 0.08 -10.10 16 16 C -0.05 -0.67 5.58 -104.32 -0.58 -1.26 16 17 C -0.14 -1.51 7.57 -38.96 -0.29 -1.81 16 18 C 0.13 1.25 11.15 -17.51 -0.20 1.05 16 19 N -0.45 -5.38 10.30 -10.96 -0.11 -5.49 16 20 C 0.07 0.96 6.61 -84.84 -0.56 0.40 16 21 C -0.04 -0.44 10.11 -39.15 -0.40 -0.84 16 22 C -0.16 -1.35 10.02 -39.79 -0.40 -1.75 16 23 C 0.14 1.49 11.16 -17.41 -0.19 1.30 16 24 N -0.44 -6.83 9.09 -10.71 -0.10 -6.93 16 25 C 0.11 1.69 6.60 -84.54 -0.56 1.13 16 26 C 0.12 1.92 6.61 -3.37 -0.02 1.90 16 27 C 0.05 0.94 5.18 -3.46 -0.02 0.92 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.87 7.09 -51.93 -0.37 0.50 16 32 H 0.08 1.37 8.06 -51.93 -0.42 0.95 16 33 H 0.10 1.12 3.61 -51.95 -0.19 0.93 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.17 1.35 5.42 -52.49 -0.28 1.07 16 36 H 0.17 0.94 8.06 -52.48 -0.42 0.51 16 37 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 38 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.47 7.09 -51.93 -0.37 1.11 16 42 H 0.04 0.95 6.63 -51.93 -0.34 0.61 16 43 H 0.08 1.51 8.11 -51.92 -0.42 1.08 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -34.69 348.48 -9.77 -44.46 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.21 Total: -0.19 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -3.74 Total: 3.56 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -1.13 Total: -59.37 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.69 -9.77 -44.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154301977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.447 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds