Wall clock time and date at job start Tue Mar 31 2020 14:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00030 * 2 1 4 4 H 1.48496 * 109.47364 * 239.99881 * 3 2 1 5 5 H 1.48502 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46885 * 119.99988 * 3 2 1 7 7 C 1.37876 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99920 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47485 * 175.18581 * 9 7 2 11 11 C 1.46895 * 110.99876 * 295.42956 * 10 9 7 12 12 C 1.53241 * 109.34065 * 187.25165 * 11 10 9 13 13 N 1.47080 * 108.51880 * 306.16657 * 12 11 10 14 14 C 1.34774 * 120.87880 * 231.18514 * 13 12 11 15 15 O 1.21553 * 120.00150 * 184.88551 * 14 13 12 16 16 C 1.47860 * 120.00188 * 4.88723 * 14 13 12 17 17 C 1.38874 * 121.07410 * 325.50851 * 16 14 13 18 18 C 1.39286 * 119.64384 * 179.97438 * 17 16 14 19 19 N 1.31019 * 121.76413 * 359.70937 * 18 17 16 20 20 C 1.33377 * 121.80058 * 0.57643 * 19 18 17 21 21 C 1.41031 * 121.06295 * 179.72115 * 20 19 18 22 22 C 1.36510 * 118.23379 * 179.72825 * 21 20 19 23 23 C 1.39349 * 120.00273 * 359.97370 * 22 21 20 24 24 N 1.31197 * 121.59618 * 0.02583 * 23 22 21 25 25 C 1.33256 * 121.31561 * 359.97438 * 24 23 22 26 26 C 1.47074 * 118.23911 * 51.45541 * 13 12 11 27 27 C 1.46905 * 110.99829 * 59.72116 * 10 9 7 28 28 H 0.97006 * 120.00150 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47494 * 55.18058 * 9 7 2 30 30 H 1.09003 * 109.47088 * 295.18140 * 9 7 2 31 31 H 1.09000 * 109.50067 * 67.28869 * 11 10 9 32 32 H 1.09007 * 109.50927 * 307.21755 * 11 10 9 33 33 H 1.08995 * 109.63101 * 186.45604 * 12 11 10 34 34 H 1.08997 * 109.62917 * 65.87363 * 12 11 10 35 35 H 1.08001 * 120.17378 * 359.97438 * 17 16 14 36 36 H 1.08007 * 119.12152 * 180.02562 * 18 17 16 37 37 H 1.08004 * 120.88698 * 359.70366 * 21 20 19 38 38 H 1.08002 * 119.99649 * 180.02562 * 22 21 20 39 39 H 1.08006 * 119.20364 * 180.02562 * 23 22 21 40 40 H 1.09005 * 109.62999 * 68.25596 * 26 13 12 41 41 H 1.08997 * 109.63177 * 188.83385 * 26 13 12 42 42 H 1.08999 * 109.49623 * 292.71675 * 27 10 9 43 43 H 1.09008 * 109.49255 * 52.78837 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2014 -3.6132 -0.1183 11 6 2.8994 -3.5766 -1.4103 12 6 3.7421 -4.8468 -1.5680 13 7 4.6163 -4.9763 -0.3923 14 6 5.9419 -5.1737 -0.5344 15 8 6.6360 -5.3672 0.4445 16 6 6.5520 -5.1548 -1.8812 17 6 5.8631 -5.6356 -2.9870 18 6 6.4662 -5.6030 -4.2421 19 7 7.6730 -5.1231 -4.4151 20 6 8.3940 -4.6503 -3.3975 21 6 9.6940 -4.1426 -3.6006 22 6 10.3782 -3.6679 -2.5189 23 6 9.7894 -3.6928 -1.2562 24 7 8.5798 -4.1659 -1.0710 25 6 7.8601 -4.6437 -2.0856 26 6 4.0046 -4.8909 0.9425 27 6 3.1525 -3.6132 1.0013 28 1 -0.4851 0.8401 -0.0004 29 1 0.5615 -2.5199 -0.8456 30 1 0.6903 -2.5957 0.9280 31 1 3.5490 -2.7021 -1.4483 32 1 2.1687 -3.5224 -2.2174 33 1 4.3498 -4.7734 -2.4698 34 1 3.0867 -5.7151 -1.6344 35 1 4.8651 -6.0326 -2.8743 36 1 5.9226 -5.9787 -5.0964 37 1 10.1366 -4.1300 -4.5857 38 1 11.3756 -3.2722 -2.6420 39 1 10.3423 -3.3136 -0.4094 40 1 3.3739 -5.7635 1.1128 41 1 4.7859 -4.8467 1.7012 42 1 3.7984 -2.7381 0.9298 43 1 2.6051 -3.5856 1.9436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154301977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:50 Heat of formation + Delta-G solvation = 47.402231 kcal Electronic energy + Delta-G solvation = -27577.590952 eV Core-core repulsion = 23815.990404 eV Total energy + Delta-G solvation = -3761.600548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.52015 -41.03233 -39.00093 -38.89637 -36.18246 -35.10342 -34.31443 -32.79042 -31.95555 -31.55843 -29.96141 -27.55163 -26.30591 -25.53237 -24.93121 -24.31071 -23.67008 -21.97208 -20.43970 -20.21288 -18.85179 -18.57145 -18.13105 -17.61674 -16.83276 -16.77831 -16.58038 -16.07507 -16.00674 -15.75043 -15.64969 -15.41882 -15.06760 -14.89839 -14.56885 -14.32675 -14.05953 -13.76475 -13.61320 -13.53232 -13.07159 -12.98684 -12.83112 -12.59300 -12.46225 -12.32261 -12.04407 -11.87884 -11.79391 -11.70100 -11.62038 -11.10415 -10.65126 -10.06460 -9.99689 -9.93430 -9.77930 -9.10468 -8.21367 -6.39897 -1.08285 -0.47833 0.58171 1.30572 1.31803 1.39844 1.57453 1.76275 1.98032 2.31490 2.97160 3.00259 3.04025 3.13653 3.24654 3.28098 3.45493 3.67113 3.86555 3.91615 4.00082 4.12000 4.17036 4.24463 4.29829 4.37652 4.46168 4.48312 4.58706 4.67675 4.69643 4.83748 4.85657 4.99762 5.00405 5.12725 5.16921 5.20480 5.29012 5.40275 5.57813 5.69293 5.95891 6.11962 6.29198 6.40408 6.62206 6.79826 6.81430 6.99131 7.31471 8.80912 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.003641 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.390333 B = 7688.780564 C = 8334.750838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.560 4.560 8 H 0.045 0.955 9 C 0.201 3.799 10 N -0.531 5.531 11 C 0.048 3.952 12 C 0.088 3.912 13 N -0.601 5.601 14 C 0.557 3.443 15 O -0.552 6.552 16 C -0.086 4.086 17 C -0.123 4.123 18 C 0.135 3.865 19 N -0.462 5.462 20 C 0.057 3.943 21 C -0.049 4.049 22 C -0.145 4.145 23 C 0.127 3.873 24 N -0.498 5.498 25 C 0.083 3.917 26 C 0.128 3.872 27 C 0.055 3.945 28 H 0.267 0.733 29 H 0.018 0.982 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.196 0.804 36 H 0.220 0.780 37 H 0.176 0.824 38 H 0.190 0.810 39 H 0.187 0.813 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.009 0.991 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.867 -12.279 -10.880 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.180 4.180 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.599 4.599 8 H 0.063 0.937 9 C 0.075 3.925 10 N -0.255 5.255 11 C -0.081 4.081 12 C -0.033 4.033 13 N -0.334 5.334 14 C 0.345 3.655 15 O -0.430 6.430 16 C -0.098 4.098 17 C -0.145 4.145 18 C -0.037 4.037 19 N -0.171 5.171 20 C -0.066 4.066 21 C -0.075 4.075 22 C -0.167 4.167 23 C -0.045 4.045 24 N -0.207 5.207 25 C -0.041 4.041 26 C 0.006 3.994 27 C -0.074 4.074 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.107 0.893 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.213 0.787 36 H 0.236 0.764 37 H 0.194 0.806 38 H 0.207 0.793 39 H 0.204 0.796 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.028 0.972 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.785 -12.693 -10.295 23.428 hybrid contribution 0.413 2.190 0.594 2.307 sum 17.199 -10.503 -9.701 22.366 Atomic orbital electron populations 1.70014 1.07186 1.27990 1.50662 1.25660 0.95540 1.02283 0.94495 0.85785 0.78630 0.79726 0.78603 1.19920 1.20026 1.20171 1.21901 0.92861 0.93415 1.51748 0.93721 1.19434 0.91027 0.86083 0.95988 1.62468 1.16686 1.44444 1.01859 1.22334 0.96753 0.95990 0.93022 1.23028 0.92846 0.98910 0.88516 1.48159 1.06096 1.70232 1.08908 1.18245 0.81645 0.77079 0.88521 1.90748 1.61746 1.49830 1.40687 1.20376 0.93710 1.01055 0.94623 1.23395 1.02018 0.97090 0.91962 1.23845 0.90063 0.92360 0.97464 1.67819 1.08096 1.08704 1.32498 1.19939 0.97242 1.00593 0.88871 1.21732 0.90419 0.93370 1.01999 1.22439 1.03258 0.99099 0.91857 1.23821 0.89957 0.91728 0.98994 1.68065 1.08707 1.10231 1.33661 1.19604 0.94381 0.98980 0.91111 1.21809 0.95903 0.98030 0.83651 1.22299 0.93947 0.95506 0.95661 0.92409 0.96351 0.97434 0.97342 0.89272 0.85760 0.86945 0.78687 0.76355 0.80647 0.79296 0.79624 0.88597 0.90094 0.97242 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.77 13.29 21.45 0.28 -53.48 16 2 C 0.02 1.15 5.46 84.66 0.46 1.61 16 3 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 7 C -0.56 -31.03 7.76 25.60 0.20 -30.83 16 8 H 0.04 2.53 5.88 -2.91 -0.02 2.51 16 9 C 0.20 10.23 5.11 85.56 0.44 10.67 16 10 N -0.53 -21.65 4.83 -898.86 -4.34 -25.99 16 11 C 0.05 1.70 5.24 86.38 0.45 2.15 16 12 C 0.09 2.22 5.17 86.35 0.45 2.67 16 13 N -0.60 -18.77 3.00 -820.46 -2.46 -21.24 16 14 C 0.56 19.15 7.35 86.79 0.64 19.78 16 15 O -0.55 -22.97 15.51 -3.88 -0.06 -23.03 16 16 C -0.09 -2.48 5.58 -19.67 -0.11 -2.59 16 17 C -0.12 -2.30 7.57 22.67 0.17 -2.13 16 18 C 0.14 2.12 11.15 85.07 0.95 3.07 16 19 N -0.46 -9.81 10.30 -188.60 -1.94 -11.76 16 20 C 0.06 1.38 6.61 40.43 0.27 1.65 16 21 C -0.05 -0.86 10.11 22.55 0.23 -0.63 16 22 C -0.15 -2.14 10.02 22.13 0.22 -1.92 16 23 C 0.13 2.75 11.16 85.06 0.95 3.70 16 24 N -0.50 -15.93 9.09 -187.78 -1.71 -17.64 16 25 C 0.08 2.53 6.60 40.68 0.27 2.79 16 26 C 0.13 4.19 6.61 86.50 0.57 4.76 16 27 C 0.06 2.17 5.18 86.54 0.45 2.62 16 28 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 29 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 30 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.01 0.35 7.09 -2.39 -0.02 0.33 16 32 H 0.09 2.97 8.06 -2.38 -0.02 2.95 16 33 H 0.13 2.49 3.61 -2.41 -0.01 2.48 16 34 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.20 2.35 5.42 -2.91 -0.02 2.33 16 36 H 0.22 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 39 H 0.19 2.85 8.06 -2.91 -0.02 2.82 16 40 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 41 H 0.08 2.79 7.09 -2.39 -0.02 2.77 16 42 H 0.01 0.43 6.63 -2.39 -0.02 0.41 16 43 H 0.08 3.05 8.11 -2.38 -0.02 3.03 16 Total: -1.00 -80.52 348.48 -0.55 -81.08 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.05 Total: 8.24 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 6.60 Total: 17.38 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -10.17 Total: -130.10 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.06 Total: -23.03 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -80.52 -0.55 -81.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154301977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.478 kcal (2) G-P(sol) polarization free energy of solvation -80.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds