Wall clock time and date at job start Tue Mar 31 2020 14:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99821 * 2 1 4 4 H 1.48503 * 109.47393 * 240.00126 * 3 2 1 5 5 H 1.48495 * 109.47469 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47214 * 120.00540 * 3 2 1 7 7 C 1.37869 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00102 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00202 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47588 * 185.01419 * 9 7 2 11 11 C 1.46902 * 110.99890 * 295.01326 * 10 9 7 12 12 C 1.53238 * 109.33762 * 187.25353 * 11 10 9 13 13 N 1.47079 * 108.52392 * 306.16404 * 12 11 10 14 14 C 1.34777 * 120.88341 * 230.91878 * 13 12 11 15 15 O 1.21538 * 119.99745 * 355.68258 * 14 13 12 16 16 C 1.47973 * 119.99922 * 175.68415 * 14 13 12 17 17 C 1.38906 * 121.12526 * 54.76038 * 16 14 13 18 18 C 1.39283 * 119.47167 * 179.97438 * 17 16 14 19 19 N 1.30993 * 121.94023 * 0.02562 * 18 17 16 20 20 C 1.33638 * 121.90967 * 359.97438 * 19 18 17 21 21 N 1.33784 * 120.74904 * 179.97438 * 20 19 18 22 22 C 1.31058 * 121.43134 * 180.02562 * 21 20 19 23 23 C 1.39344 * 121.80982 * 0.02578 * 22 21 20 24 24 C 1.36703 * 119.77596 * 359.97438 * 23 22 21 25 25 C 1.40418 * 118.12393 * 359.75187 * 24 23 22 26 26 C 1.47075 * 118.23317 * 51.18335 * 13 12 11 27 27 C 1.46902 * 110.99751 * 59.30795 * 10 9 7 28 28 H 0.96996 * 119.99810 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46935 * 65.01401 * 9 7 2 30 30 H 1.09000 * 109.47253 * 305.01125 * 9 7 2 31 31 H 1.08996 * 109.49663 * 67.28901 * 11 10 9 32 32 H 1.09001 * 109.50786 * 307.22001 * 11 10 9 33 33 H 1.09007 * 109.62836 * 186.45336 * 12 11 10 34 34 H 1.09003 * 109.63507 * 65.87949 * 12 11 10 35 35 H 1.08002 * 120.26490 * 359.97438 * 17 16 14 36 36 H 1.08001 * 119.02809 * 179.97438 * 18 17 16 37 37 H 1.08003 * 119.09574 * 180.02562 * 22 21 20 38 38 H 1.08005 * 120.11325 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.93505 * 180.02562 * 24 23 22 40 40 H 1.09007 * 109.62800 * 68.53259 * 26 13 12 41 41 H 1.09004 * 109.62897 * 189.10332 * 26 13 12 42 42 H 1.08995 * 109.49443 * 292.70611 * 27 10 9 43 43 H 1.09000 * 109.49034 * 52.79380 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2011 -3.6131 0.1199 11 6 3.0753 -3.6891 -1.0583 12 6 3.9235 -4.9629 -0.9794 13 7 4.6216 -4.9800 0.3150 14 6 5.9518 -5.1864 0.3809 15 8 6.5783 -5.4393 -0.6294 16 6 6.6496 -5.1050 1.6832 17 6 6.2389 -5.8707 2.7670 18 6 6.9210 -5.7673 3.9769 19 7 7.9453 -4.9650 4.1286 20 6 8.3962 -4.1988 3.1309 21 7 9.4442 -3.3871 3.3117 22 6 9.8972 -2.6297 2.3428 23 6 9.3138 -2.6285 1.0774 24 6 8.2391 -3.4347 0.8246 25 6 7.7624 -4.2480 1.8653 26 6 3.8286 -4.7719 1.5360 27 6 2.9840 -3.5056 1.3582 28 1 -0.4850 0.8400 0.0004 29 1 0.6931 -2.5965 -0.9319 30 1 0.5591 -2.5192 0.8414 31 1 3.7293 -2.8175 -1.0828 32 1 2.4666 -3.7128 -1.9622 33 1 4.6532 -4.9676 -1.7891 34 1 3.2784 -5.8380 -1.0591 35 1 5.3973 -6.5410 2.6721 36 1 6.5953 -6.3657 4.8149 37 1 10.7461 -1.9888 2.5303 38 1 9.7098 -1.9935 0.2987 39 1 7.7727 -3.4489 -0.1493 40 1 3.1743 -5.6286 1.6982 41 1 4.4956 -4.6504 2.3896 42 1 3.6394 -2.6367 1.3000 43 1 2.3089 -3.3965 2.2070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154337031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:08 Heat of formation + Delta-G solvation = 57.114438 kcal Electronic energy + Delta-G solvation = -27679.734887 eV Core-core repulsion = 23918.555491 eV Total energy + Delta-G solvation = -3761.179395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62844 -39.96208 -38.01164 -37.69299 -34.70828 -34.19068 -32.47353 -31.65615 -31.10000 -30.59677 -28.38547 -26.02855 -25.17013 -24.45448 -23.85098 -23.13655 -22.21830 -20.70318 -19.52962 -18.83193 -17.96807 -17.33691 -16.71889 -16.36733 -15.92033 -15.43008 -15.09164 -14.93846 -14.92383 -14.82268 -14.56482 -14.20902 -13.91222 -13.76187 -13.50130 -13.24769 -12.77411 -12.65468 -12.27697 -12.07504 -11.96949 -11.31732 -11.25634 -11.18633 -11.08860 -10.81298 -10.77450 -10.73724 -10.43226 -10.22287 -9.99959 -9.78401 -9.23984 -9.20856 -9.05196 -8.68165 -8.54731 -7.40522 -6.15051 -4.24896 -0.20372 0.34226 1.48286 2.38441 2.54954 2.87991 3.20009 3.25975 3.27870 3.47499 3.85418 4.02792 4.26868 4.30343 4.32899 4.38133 4.61532 4.73885 4.83689 4.91171 5.04160 5.13834 5.15018 5.26906 5.31663 5.37706 5.46087 5.56636 5.62592 5.70577 5.80372 5.86012 5.90920 5.96265 6.27101 6.31207 6.46276 6.49962 6.55538 7.07542 7.13346 7.25815 7.37422 7.75138 7.83099 7.88486 7.91420 8.05237 8.13444 8.84005 9.42922 10.90261 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.003972 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.130713 B = 7047.639675 C = 8035.573651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.554 4.554 8 H 0.054 0.946 9 C 0.188 3.812 10 N -0.539 5.539 11 C 0.048 3.952 12 C 0.115 3.885 13 N -0.591 5.591 14 C 0.556 3.444 15 O -0.534 6.534 16 C -0.038 4.038 17 C -0.151 4.151 18 C 0.159 3.841 19 N -0.456 5.456 20 C 0.307 3.693 21 N -0.466 5.466 22 C 0.162 3.838 23 C -0.177 4.177 24 C -0.033 4.033 25 C -0.123 4.123 26 C 0.099 3.901 27 C 0.050 3.950 28 H 0.264 0.736 29 H 0.030 0.970 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.175 0.825 37 H 0.169 0.831 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.296 -10.489 4.015 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.203 1.203 7 C -0.593 4.593 8 H 0.072 0.928 9 C 0.063 3.937 10 N -0.264 5.264 11 C -0.081 4.081 12 C -0.006 4.006 13 N -0.323 5.323 14 C 0.343 3.657 15 O -0.412 6.412 16 C -0.051 4.051 17 C -0.172 4.172 18 C -0.016 4.016 19 N -0.165 5.165 20 C 0.070 3.930 21 N -0.175 5.175 22 C -0.014 4.014 23 C -0.197 4.197 24 C -0.060 4.060 25 C -0.128 4.128 26 C -0.024 4.024 27 C -0.079 4.079 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.169 0.831 36 H 0.192 0.808 37 H 0.186 0.814 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.987 -10.868 5.142 18.444 hybrid contribution -0.061 1.827 -1.638 2.454 sum 13.926 -9.042 3.504 16.970 Atomic orbital electron populations 1.69918 1.05985 1.27130 1.49591 1.24931 0.94756 0.99123 0.94693 0.86729 0.79764 0.83333 0.78657 1.20231 1.21019 1.20285 1.21654 0.93121 0.92113 1.52456 0.92791 1.19769 0.90626 0.85211 0.98092 1.62519 1.16811 1.46748 1.00297 1.22272 0.95336 0.95046 0.95446 1.21954 0.95196 0.99484 0.84016 1.48159 1.06019 1.68656 1.09421 1.18103 0.82109 0.77738 0.87758 1.90795 1.65911 1.48898 1.35569 1.20397 0.94303 0.95820 0.94548 1.22530 1.01478 1.00268 0.92890 1.23051 0.88993 0.93147 0.96433 1.67384 1.12492 1.05122 1.31488 1.19232 0.92388 0.94238 0.87189 1.67648 1.10776 1.05724 1.33356 1.23136 0.97084 0.93233 0.87956 1.22070 0.97605 1.00924 0.99130 1.21643 0.94313 0.91351 0.98705 1.19366 0.97311 0.99407 0.96748 1.22310 0.94179 1.00036 0.85887 1.22219 0.96213 0.94491 0.94989 0.92599 0.95184 0.94482 0.93981 0.90004 0.89274 0.90684 0.83050 0.80808 0.81352 0.83600 0.83537 0.90237 0.89988 0.93800 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.55 -14.45 7.75 -34.44 -0.27 -14.72 16 8 H 0.05 1.41 5.88 -52.48 -0.31 1.10 16 9 C 0.19 4.50 5.11 -4.98 -0.03 4.48 16 10 N -0.54 -10.37 4.83 -235.76 -1.14 -11.51 16 11 C 0.05 0.85 5.24 -3.70 -0.02 0.83 16 12 C 0.12 1.68 6.58 -3.60 -0.02 1.66 16 13 N -0.59 -8.41 3.01 -173.52 -0.52 -8.94 16 14 C 0.56 8.19 6.56 -12.27 -0.08 8.11 16 15 O -0.53 -9.12 15.36 5.33 0.08 -9.04 16 16 C -0.04 -0.51 4.90 -104.36 -0.51 -1.02 16 17 C -0.15 -1.52 7.60 -38.95 -0.30 -1.81 16 18 C 0.16 1.57 11.14 -17.52 -0.20 1.38 16 19 N -0.46 -6.22 10.39 -12.66 -0.13 -6.35 16 20 C 0.31 4.49 7.62 -157.84 -1.20 3.29 16 21 N -0.47 -6.54 10.43 -12.63 -0.13 -6.67 16 22 C 0.16 1.69 11.14 -17.47 -0.19 1.50 16 23 C -0.18 -1.81 10.04 -39.73 -0.40 -2.21 16 24 C -0.03 -0.43 9.35 -39.32 -0.37 -0.80 16 25 C -0.12 -1.72 5.76 -106.49 -0.61 -2.34 16 26 C 0.10 1.29 5.73 -3.60 -0.02 1.27 16 27 C 0.05 0.87 5.15 -3.70 -0.02 0.85 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.84 6.92 -51.93 -0.36 0.48 16 32 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 33 H 0.09 1.30 7.09 -51.92 -0.37 0.93 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.15 1.10 7.47 -52.49 -0.39 0.71 16 36 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.15 1.03 8.06 -52.48 -0.42 0.60 16 39 H 0.15 1.96 6.62 -52.49 -0.35 1.61 16 40 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 41 H 0.08 0.94 4.94 -51.93 -0.26 0.69 16 42 H 0.04 0.87 6.79 -51.93 -0.35 0.52 16 43 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 LS Contribution 350.14 15.07 5.28 5.28 Total: -1.00 -32.89 350.14 -10.50 -43.39 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.31 Total: 0.21 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -4.33 Total: 2.20 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -1.19 Total: -57.88 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.89 -10.50 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154337031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.500 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds