Wall clock time and date at job start Tue Mar 31 2020 14:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99821 * 2 1 4 4 H 1.48503 * 109.47393 * 240.00126 * 3 2 1 5 5 H 1.48495 * 109.47469 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47214 * 120.00540 * 3 2 1 7 7 C 1.37869 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00102 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00202 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47588 * 185.01419 * 9 7 2 11 11 C 1.46902 * 110.99890 * 295.01326 * 10 9 7 12 12 C 1.53238 * 109.33762 * 187.25353 * 11 10 9 13 13 N 1.47079 * 108.52392 * 306.16404 * 12 11 10 14 14 C 1.34777 * 120.88341 * 230.91878 * 13 12 11 15 15 O 1.21538 * 119.99745 * 355.68258 * 14 13 12 16 16 C 1.47973 * 119.99922 * 175.68415 * 14 13 12 17 17 C 1.38906 * 121.12526 * 54.76038 * 16 14 13 18 18 C 1.39283 * 119.47167 * 179.97438 * 17 16 14 19 19 N 1.30993 * 121.94023 * 0.02562 * 18 17 16 20 20 C 1.33638 * 121.90967 * 359.97438 * 19 18 17 21 21 N 1.33784 * 120.74904 * 179.97438 * 20 19 18 22 22 C 1.31058 * 121.43134 * 180.02562 * 21 20 19 23 23 C 1.39344 * 121.80982 * 0.02578 * 22 21 20 24 24 C 1.36703 * 119.77596 * 359.97438 * 23 22 21 25 25 C 1.40418 * 118.12393 * 359.75187 * 24 23 22 26 26 C 1.47075 * 118.23317 * 51.18335 * 13 12 11 27 27 C 1.46902 * 110.99751 * 59.30795 * 10 9 7 28 28 H 0.96996 * 119.99810 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46935 * 65.01401 * 9 7 2 30 30 H 1.09000 * 109.47253 * 305.01125 * 9 7 2 31 31 H 1.08996 * 109.49663 * 67.28901 * 11 10 9 32 32 H 1.09001 * 109.50786 * 307.22001 * 11 10 9 33 33 H 1.09007 * 109.62836 * 186.45336 * 12 11 10 34 34 H 1.09003 * 109.63507 * 65.87949 * 12 11 10 35 35 H 1.08002 * 120.26490 * 359.97438 * 17 16 14 36 36 H 1.08001 * 119.02809 * 179.97438 * 18 17 16 37 37 H 1.08003 * 119.09574 * 180.02562 * 22 21 20 38 38 H 1.08005 * 120.11325 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.93505 * 180.02562 * 24 23 22 40 40 H 1.09007 * 109.62800 * 68.53259 * 26 13 12 41 41 H 1.09004 * 109.62897 * 189.10332 * 26 13 12 42 42 H 1.08995 * 109.49443 * 292.70611 * 27 10 9 43 43 H 1.09000 * 109.49034 * 52.79380 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2011 -3.6131 0.1199 11 6 3.0753 -3.6891 -1.0583 12 6 3.9235 -4.9629 -0.9794 13 7 4.6216 -4.9800 0.3150 14 6 5.9518 -5.1864 0.3809 15 8 6.5783 -5.4393 -0.6294 16 6 6.6496 -5.1050 1.6832 17 6 6.2389 -5.8707 2.7670 18 6 6.9210 -5.7673 3.9769 19 7 7.9453 -4.9650 4.1286 20 6 8.3962 -4.1988 3.1309 21 7 9.4442 -3.3871 3.3117 22 6 9.8972 -2.6297 2.3428 23 6 9.3138 -2.6285 1.0774 24 6 8.2391 -3.4347 0.8246 25 6 7.7624 -4.2480 1.8653 26 6 3.8286 -4.7719 1.5360 27 6 2.9840 -3.5056 1.3582 28 1 -0.4850 0.8400 0.0004 29 1 0.6931 -2.5965 -0.9319 30 1 0.5591 -2.5192 0.8414 31 1 3.7293 -2.8175 -1.0828 32 1 2.4666 -3.7128 -1.9622 33 1 4.6532 -4.9676 -1.7891 34 1 3.2784 -5.8380 -1.0591 35 1 5.3973 -6.5410 2.6721 36 1 6.5953 -6.3657 4.8149 37 1 10.7461 -1.9888 2.5303 38 1 9.7098 -1.9935 0.2987 39 1 7.7727 -3.4489 -0.1493 40 1 3.1743 -5.6286 1.6982 41 1 4.4956 -4.6504 2.3896 42 1 3.6394 -2.6367 1.3000 43 1 2.3089 -3.3965 2.2070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154337031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:07 Heat of formation + Delta-G solvation = 34.323262 kcal Electronic energy + Delta-G solvation = -27680.723186 eV Core-core repulsion = 23918.555491 eV Total energy + Delta-G solvation = -3762.167695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.55588 -41.09980 -39.14550 -38.82772 -36.16833 -35.17874 -34.35466 -32.72127 -31.96501 -31.74873 -29.98618 -27.51976 -26.36387 -25.34768 -25.00676 -24.47427 -23.70298 -22.01724 -20.59863 -19.92372 -18.91448 -18.60134 -18.11474 -17.75178 -16.99239 -16.79882 -16.46073 -16.06129 -15.94682 -15.91730 -15.71749 -15.50004 -15.19402 -15.10865 -14.60075 -14.47795 -14.03737 -13.84058 -13.61816 -13.37473 -13.02237 -13.01639 -12.86259 -12.60434 -12.49399 -12.34928 -12.14303 -12.03594 -11.87307 -11.72001 -11.64178 -11.32151 -10.64685 -10.15810 -10.06229 -9.99958 -9.88891 -9.11216 -8.20802 -6.39419 -1.08139 -0.50242 0.53388 1.31396 1.32012 1.32979 1.40688 1.66080 1.83803 2.31999 2.69034 2.95123 3.00955 3.05011 3.25591 3.37761 3.48339 3.60362 3.78297 3.89946 4.01135 4.10013 4.14500 4.23073 4.27543 4.30611 4.42588 4.45214 4.55744 4.62085 4.68644 4.78875 4.84340 4.99605 5.02956 5.11879 5.14341 5.18866 5.29100 5.33282 5.51793 5.69521 5.94221 6.08364 6.21816 6.27896 6.40243 6.78199 6.80209 7.02102 7.32110 8.81545 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.003972 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.130713 B = 7047.639675 C = 8035.573651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.558 4.558 8 H 0.048 0.952 9 C 0.201 3.799 10 N -0.532 5.532 11 C 0.052 3.948 12 C 0.126 3.874 13 N -0.593 5.593 14 C 0.562 3.438 15 O -0.563 6.563 16 C -0.066 4.066 17 C -0.131 4.131 18 C 0.166 3.834 19 N -0.484 5.484 20 C 0.283 3.717 21 N -0.497 5.497 22 C 0.163 3.837 23 C -0.164 4.164 24 C -0.062 4.062 25 C -0.139 4.139 26 C 0.111 3.889 27 C 0.050 3.950 28 H 0.266 0.734 29 H 0.008 0.992 30 H 0.015 0.985 31 H 0.013 0.987 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.187 0.813 36 H 0.220 0.780 37 H 0.209 0.791 38 H 0.179 0.821 39 H 0.134 0.866 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.013 0.987 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.372 -11.402 5.097 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.597 4.597 8 H 0.066 0.934 9 C 0.074 3.926 10 N -0.255 5.255 11 C -0.077 4.077 12 C 0.004 3.996 13 N -0.324 5.324 14 C 0.350 3.650 15 O -0.443 6.443 16 C -0.078 4.078 17 C -0.151 4.151 18 C -0.009 4.009 19 N -0.194 5.194 20 C 0.046 3.954 21 N -0.207 5.207 22 C -0.012 4.012 23 C -0.183 4.183 24 C -0.089 4.089 25 C -0.145 4.145 26 C -0.011 4.011 27 C -0.080 4.080 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.204 0.796 36 H 0.237 0.763 37 H 0.226 0.774 38 H 0.196 0.804 39 H 0.152 0.848 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.031 0.969 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.076 -11.789 6.227 20.125 hybrid contribution -0.376 2.093 -1.962 2.893 sum 14.700 -9.696 4.266 18.119 Atomic orbital electron populations 1.70021 1.07277 1.27962 1.50710 1.25679 0.95520 1.02369 0.94547 0.85778 0.78620 0.79630 0.78696 1.19822 1.20399 1.19913 1.21884 0.92939 0.93225 1.51638 0.93387 1.19432 0.91052 0.86180 0.95905 1.62456 1.17132 1.44138 1.01815 1.22261 0.94854 0.95774 0.94808 1.21810 0.94942 0.98250 0.84587 1.48205 1.06155 1.68535 1.09536 1.18291 0.81844 0.76797 0.88073 1.90771 1.66412 1.50211 1.36872 1.20366 0.94983 0.97710 0.94726 1.22962 1.01529 0.98869 0.91704 1.23837 0.87415 0.92014 0.97591 1.67440 1.14077 1.06157 1.31724 1.19469 0.93117 0.95166 0.87649 1.67685 1.11342 1.06771 1.34860 1.23821 0.97532 0.92567 0.87322 1.22450 0.96125 0.99824 0.99918 1.21713 0.95929 0.93007 0.98260 1.19504 0.97906 1.00117 0.96949 1.22324 0.94118 0.98646 0.86020 1.22276 0.95914 0.95872 0.93891 0.92484 0.97364 0.96665 0.96872 0.90077 0.89232 0.88468 0.79578 0.76340 0.77446 0.80371 0.84848 0.87183 0.87953 0.96908 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.96 13.29 21.44 0.28 -52.67 16 2 C 0.02 1.04 5.46 84.65 0.46 1.51 16 3 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.56 -29.75 7.75 25.60 0.20 -29.56 16 8 H 0.05 2.58 5.88 -2.91 -0.02 2.56 16 9 C 0.20 9.88 5.11 85.56 0.44 10.31 16 10 N -0.53 -20.50 4.83 -899.81 -4.35 -24.84 16 11 C 0.05 1.85 5.24 86.38 0.45 2.31 16 12 C 0.13 3.54 6.58 86.35 0.57 4.10 16 13 N -0.59 -15.97 3.01 -821.18 -2.47 -18.44 16 14 C 0.56 16.00 6.56 86.82 0.57 16.57 16 15 O -0.56 -19.17 15.36 -3.84 -0.06 -19.23 16 16 C -0.07 -1.65 4.90 -19.70 -0.10 -1.75 16 17 C -0.13 -2.22 7.60 22.68 0.17 -2.05 16 18 C 0.17 2.79 11.14 85.07 0.95 3.74 16 19 N -0.48 -12.54 10.39 -193.95 -2.01 -14.55 16 20 C 0.28 8.14 7.62 135.00 1.03 9.17 16 21 N -0.50 -13.63 10.43 -193.86 -2.02 -15.66 16 22 C 0.16 3.17 11.14 85.07 0.95 4.12 16 23 C -0.16 -3.17 10.04 22.18 0.22 -2.95 16 24 C -0.06 -1.63 9.35 22.44 0.21 -1.42 16 25 C -0.14 -3.88 5.76 -21.07 -0.12 -4.00 16 26 C 0.11 2.62 5.73 86.35 0.49 3.11 16 27 C 0.05 1.69 5.15 86.38 0.45 2.13 16 28 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.01 0.44 8.07 -2.38 -0.02 0.42 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.01 0.54 6.92 -2.39 -0.02 0.52 16 32 H 0.08 2.85 8.05 -2.39 -0.02 2.83 16 33 H 0.09 2.55 7.09 -2.38 -0.02 2.53 16 34 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.19 1.78 7.47 -2.91 -0.02 1.76 16 36 H 0.22 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.21 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.13 3.73 6.62 -2.91 -0.02 3.71 16 40 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.10 2.04 4.94 -2.39 -0.01 2.03 16 42 H 0.01 0.51 6.79 -2.39 -0.02 0.49 16 43 H 0.08 2.78 8.11 -2.39 -0.02 2.76 16 Total: -1.00 -74.78 350.14 -0.62 -75.40 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.04 Total: 9.48 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 6.94 Total: 15.36 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -10.57 Total: -126.16 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.06 Total: -19.23 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -74.78 -0.62 -75.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154337031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.723 kcal (2) G-P(sol) polarization free energy of solvation -74.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds