Wall clock time and date at job start Tue Mar 31 2020 14:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99692 * 2 1 4 4 H 1.48503 * 109.46893 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47236 * 299.99543 * 3 2 1 6 6 H 1.48496 * 109.47312 * 60.00171 * 3 2 1 7 7 C 1.37874 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99615 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00100 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46984 * 175.36615 * 9 7 2 11 11 C 1.46900 * 110.99617 * 295.71566 * 10 9 7 12 12 C 1.53236 * 109.33831 * 187.25654 * 11 10 9 13 13 N 1.47079 * 108.52106 * 306.16996 * 12 11 10 14 14 C 1.34782 * 120.88316 * 231.18844 * 13 12 11 15 15 O 1.21602 * 120.00021 * 183.98966 * 14 13 12 16 16 C 1.47425 * 119.99886 * 3.98496 * 14 13 12 17 17 C 1.38895 * 120.41579 * 307.43380 * 16 14 13 18 18 C 1.38858 * 120.75223 * 179.97438 * 17 16 14 19 19 C 1.36428 * 121.14557 * 0.25544 * 18 17 16 20 20 C 1.40292 * 119.95189 * 359.49897 * 19 18 17 21 21 C 1.40673 * 122.03120 * 180.21816 * 20 19 18 22 22 N 1.31817 * 118.34704 * 180.27352 * 21 20 19 23 23 C 1.32445 * 121.60255 * 359.97438 * 22 21 20 24 24 N 1.31276 * 122.79128 * 0.02562 * 23 22 21 25 25 C 1.33545 * 120.28406 * 359.97438 * 24 23 22 26 26 C 1.47075 * 118.23688 * 51.45627 * 13 12 11 27 27 C 1.46896 * 111.00317 * 60.01613 * 10 9 7 28 28 H 0.97000 * 119.99796 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47226 * 55.36687 * 9 7 2 30 30 H 1.08996 * 109.47144 * 295.36106 * 9 7 2 31 31 H 1.09002 * 109.49479 * 67.29474 * 11 10 9 32 32 H 1.09004 * 109.51684 * 307.22742 * 11 10 9 33 33 H 1.09008 * 109.63106 * 186.46044 * 12 11 10 34 34 H 1.09003 * 109.63289 * 65.87937 * 12 11 10 35 35 H 1.08008 * 119.62447 * 359.97438 * 17 16 14 36 36 H 1.08002 * 119.42307 * 179.97438 * 18 17 16 37 37 H 1.08002 * 120.02395 * 179.72071 * 19 18 17 38 38 H 1.08001 * 120.82473 * 0.29335 * 21 20 19 39 39 H 1.08003 * 118.60860 * 179.97438 * 23 22 21 40 40 H 1.09007 * 109.62807 * 68.25524 * 26 13 12 41 41 H 1.09007 * 109.63011 * 188.83293 * 26 13 12 42 42 H 1.08996 * 109.49296 * 292.70935 * 27 10 9 43 43 H 1.09004 * 109.48821 * 52.78882 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2018 -3.6135 -0.1107 11 6 2.9083 -3.5761 -1.3982 12 6 3.7515 -4.8464 -1.5514 13 7 4.6179 -4.9773 -0.3702 14 6 5.9444 -5.1750 -0.5037 15 8 6.6348 -5.3535 0.4813 16 6 6.5585 -5.1750 -1.8440 17 6 6.0525 -5.9890 -2.8493 18 6 6.6251 -5.9942 -4.1143 19 6 7.7006 -5.2069 -4.4052 20 6 8.2398 -4.3657 -3.4204 21 6 9.3447 -3.5328 -3.6739 22 7 9.7955 -2.7755 -2.6937 23 6 9.2340 -2.7857 -1.4942 24 7 8.2018 -3.5411 -1.1988 25 6 7.6695 -4.3453 -2.1225 26 6 3.9975 -4.8928 0.9606 27 6 3.1455 -3.6148 1.0150 28 1 -0.4850 0.8401 0.0004 29 1 0.5639 -2.5220 -0.8453 30 1 0.6879 -2.5935 0.9289 31 1 3.5584 -2.7017 -1.4311 32 1 2.1830 -3.5208 -2.2100 33 1 4.3652 -4.7725 -2.4493 34 1 3.0962 -5.7145 -1.6229 35 1 5.2040 -6.6253 -2.6447 36 1 6.2146 -6.6359 -4.8799 37 1 8.1344 -5.2285 -5.3941 38 1 9.8118 -3.5140 -4.6475 39 1 9.6431 -2.1459 -0.7262 40 1 3.3654 -5.7653 1.1261 41 1 4.7739 -4.8496 1.7246 42 1 3.7923 -2.7400 0.9485 43 1 2.5919 -3.5879 1.9536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156614617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:10 Heat of formation + Delta-G solvation = 54.647961 kcal Electronic energy + Delta-G solvation = -27647.720062 eV Core-core repulsion = 23886.433712 eV Total energy + Delta-G solvation = -3761.286350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67267 -39.88328 -37.84842 -37.32025 -34.46366 -34.34157 -32.44889 -31.87439 -31.02403 -30.29457 -28.13779 -25.74278 -25.28534 -24.54709 -23.81215 -23.02062 -22.11362 -20.52400 -19.10026 -19.06924 -18.07913 -17.26660 -16.58017 -16.31709 -15.65382 -15.38165 -15.30036 -14.96567 -14.81783 -14.49525 -14.41413 -13.88661 -13.80126 -13.66739 -13.40802 -12.92730 -12.71417 -12.51441 -12.39751 -12.04458 -11.84983 -11.37849 -11.18841 -11.10610 -11.04909 -11.02938 -10.68827 -10.64410 -10.29903 -9.95927 -9.81910 -9.67203 -9.49838 -9.32753 -8.70683 -8.48724 -8.41056 -7.29139 -6.08685 -4.17795 -0.22689 0.39390 1.42391 2.49586 2.82275 3.18966 3.23010 3.31655 3.36405 3.81062 3.86159 3.89173 4.05628 4.25111 4.36789 4.41432 4.57570 4.66037 4.87121 4.98549 5.14138 5.21811 5.29543 5.38910 5.39800 5.46312 5.60487 5.65882 5.69683 5.83521 5.88280 5.96683 6.04919 6.09262 6.24590 6.38194 6.58840 6.69898 6.73067 6.78167 7.17178 7.45703 7.54594 7.83439 7.89915 7.93875 8.14990 8.22194 8.30208 8.92322 9.49915 10.96486 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012314 B = 0.003926 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.344913 B = 7130.191121 C = 8076.209445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.050 3.950 12 C 0.102 3.898 13 N -0.600 5.600 14 C 0.566 3.434 15 O -0.523 6.523 16 C -0.102 4.102 17 C -0.049 4.049 18 C -0.124 4.124 19 C -0.058 4.058 20 C -0.172 4.172 21 C 0.199 3.801 22 N -0.527 5.527 23 C 0.302 3.698 24 N -0.486 5.486 25 C 0.192 3.808 26 C 0.118 3.882 27 C 0.050 3.950 28 H 0.262 0.738 29 H 0.035 0.965 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.177 0.823 39 H 0.198 0.802 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.191 -12.886 -11.082 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.062 3.938 10 N -0.264 5.264 11 C -0.080 4.080 12 C -0.021 4.021 13 N -0.333 5.333 14 C 0.353 3.647 15 O -0.400 6.400 16 C -0.106 4.106 17 C -0.071 4.071 18 C -0.142 4.142 19 C -0.079 4.079 20 C -0.176 4.176 21 C 0.019 3.981 22 N -0.240 5.240 23 C 0.014 3.986 24 N -0.198 5.198 25 C 0.062 3.938 26 C -0.004 4.004 27 C -0.080 4.080 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.194 0.806 39 H 0.214 0.786 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.401 -12.711 -9.617 21.482 hybrid contribution 0.437 1.450 -0.748 1.689 sum 14.838 -11.262 -10.365 21.317 Atomic orbital electron populations 1.69949 1.05966 1.26790 1.50114 1.24938 0.94746 0.99120 0.94795 0.86619 0.80196 0.83979 0.77754 1.19908 1.20897 1.20794 1.21777 0.93322 0.92106 1.51786 0.92581 1.19770 0.90656 0.85330 0.98028 1.62505 1.16615 1.46951 1.00324 1.22213 0.96677 0.94896 0.94165 1.22220 0.92744 0.99840 0.87299 1.48090 1.06062 1.70623 1.08529 1.17797 0.81746 0.77264 0.87919 1.90781 1.61421 1.48896 1.38879 1.19788 0.96312 0.99145 0.95340 1.21617 0.97875 0.95817 0.91748 1.20923 0.96527 0.99991 0.96762 1.21091 0.95075 0.93353 0.98335 1.19532 1.00215 1.01902 0.95946 1.23712 0.89272 0.86919 0.98186 1.68328 1.31583 1.22236 1.01832 1.25061 0.88094 0.93071 0.92403 1.68818 1.11030 1.05930 1.34022 1.18578 0.93173 0.93077 0.88927 1.21958 0.96240 0.98934 0.83290 1.22340 0.94573 0.95205 0.95838 0.92811 0.94662 0.95134 0.94013 0.90322 0.90193 0.90695 0.83904 0.84178 0.84113 0.80565 0.78560 0.91116 0.89392 0.93796 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.55 -14.99 7.76 -34.44 -0.27 -15.25 16 8 H 0.06 1.56 5.87 -52.49 -0.31 1.25 16 9 C 0.19 4.68 5.11 -4.97 -0.03 4.65 16 10 N -0.54 -11.08 4.83 -235.47 -1.14 -12.22 16 11 C 0.05 0.92 5.24 -3.70 -0.02 0.90 16 12 C 0.10 1.45 5.56 -3.60 -0.02 1.43 16 13 N -0.60 -9.72 3.00 -173.45 -0.52 -10.25 16 14 C 0.57 9.69 6.93 -12.52 -0.09 9.60 16 15 O -0.52 -10.66 16.22 5.28 0.09 -10.57 16 16 C -0.10 -1.44 4.95 -104.70 -0.52 -1.96 16 17 C -0.05 -0.48 7.41 -39.11 -0.29 -0.77 16 18 C -0.12 -0.88 9.93 -40.00 -0.40 -1.28 16 19 C -0.06 -0.42 9.79 -39.46 -0.39 -0.80 16 20 C -0.17 -1.83 5.74 -106.85 -0.61 -2.45 16 21 C 0.20 1.88 11.16 -16.64 -0.19 1.69 16 22 N -0.53 -6.27 10.39 -14.13 -0.15 -6.41 16 23 C 0.30 4.02 12.23 -92.03 -1.13 2.89 16 24 N -0.49 -7.90 9.69 -12.37 -0.12 -8.02 16 25 C 0.19 2.80 6.60 -84.55 -0.56 2.24 16 26 C 0.12 1.96 6.62 -3.37 -0.02 1.94 16 27 C 0.05 0.97 5.18 -3.47 -0.02 0.95 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.88 7.07 -51.93 -0.37 0.52 16 32 H 0.08 1.39 8.06 -51.93 -0.42 0.97 16 33 H 0.08 0.98 4.84 -51.92 -0.25 0.73 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.14 1.13 7.23 -52.48 -0.38 0.75 16 36 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 37 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.20 2.07 8.06 -52.48 -0.42 1.65 16 40 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 41 H 0.09 1.51 7.08 -51.92 -0.37 1.14 16 42 H 0.04 0.98 6.65 -51.93 -0.35 0.63 16 43 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -35.16 351.91 -10.82 -45.99 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.37 Total: -0.87 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -4.63 Total: 5.55 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -1.19 Total: -61.97 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.16 -10.82 -45.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156614617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.636 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds