Wall clock time and date at job start Tue Mar 31 2020 14:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99692 * 2 1 4 4 H 1.48503 * 109.46893 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47236 * 299.99543 * 3 2 1 6 6 H 1.48496 * 109.47312 * 60.00171 * 3 2 1 7 7 C 1.37874 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99615 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00100 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46984 * 175.36615 * 9 7 2 11 11 C 1.46900 * 110.99617 * 295.71566 * 10 9 7 12 12 C 1.53236 * 109.33831 * 187.25654 * 11 10 9 13 13 N 1.47079 * 108.52106 * 306.16996 * 12 11 10 14 14 C 1.34782 * 120.88316 * 231.18844 * 13 12 11 15 15 O 1.21602 * 120.00021 * 183.98966 * 14 13 12 16 16 C 1.47425 * 119.99886 * 3.98496 * 14 13 12 17 17 C 1.38895 * 120.41579 * 307.43380 * 16 14 13 18 18 C 1.38858 * 120.75223 * 179.97438 * 17 16 14 19 19 C 1.36428 * 121.14557 * 0.25544 * 18 17 16 20 20 C 1.40292 * 119.95189 * 359.49897 * 19 18 17 21 21 C 1.40673 * 122.03120 * 180.21816 * 20 19 18 22 22 N 1.31817 * 118.34704 * 180.27352 * 21 20 19 23 23 C 1.32445 * 121.60255 * 359.97438 * 22 21 20 24 24 N 1.31276 * 122.79128 * 0.02562 * 23 22 21 25 25 C 1.33545 * 120.28406 * 359.97438 * 24 23 22 26 26 C 1.47075 * 118.23688 * 51.45627 * 13 12 11 27 27 C 1.46896 * 111.00317 * 60.01613 * 10 9 7 28 28 H 0.97000 * 119.99796 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47226 * 55.36687 * 9 7 2 30 30 H 1.08996 * 109.47144 * 295.36106 * 9 7 2 31 31 H 1.09002 * 109.49479 * 67.29474 * 11 10 9 32 32 H 1.09004 * 109.51684 * 307.22742 * 11 10 9 33 33 H 1.09008 * 109.63106 * 186.46044 * 12 11 10 34 34 H 1.09003 * 109.63289 * 65.87937 * 12 11 10 35 35 H 1.08008 * 119.62447 * 359.97438 * 17 16 14 36 36 H 1.08002 * 119.42307 * 179.97438 * 18 17 16 37 37 H 1.08002 * 120.02395 * 179.72071 * 19 18 17 38 38 H 1.08001 * 120.82473 * 0.29335 * 21 20 19 39 39 H 1.08003 * 118.60860 * 179.97438 * 23 22 21 40 40 H 1.09007 * 109.62807 * 68.25524 * 26 13 12 41 41 H 1.09007 * 109.63011 * 188.83293 * 26 13 12 42 42 H 1.08996 * 109.49296 * 292.70935 * 27 10 9 43 43 H 1.09004 * 109.48821 * 52.78882 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2018 -3.6135 -0.1107 11 6 2.9083 -3.5761 -1.3982 12 6 3.7515 -4.8464 -1.5514 13 7 4.6179 -4.9773 -0.3702 14 6 5.9444 -5.1750 -0.5037 15 8 6.6348 -5.3535 0.4813 16 6 6.5585 -5.1750 -1.8440 17 6 6.0525 -5.9890 -2.8493 18 6 6.6251 -5.9942 -4.1143 19 6 7.7006 -5.2069 -4.4052 20 6 8.2398 -4.3657 -3.4204 21 6 9.3447 -3.5328 -3.6739 22 7 9.7955 -2.7755 -2.6937 23 6 9.2340 -2.7857 -1.4942 24 7 8.2018 -3.5411 -1.1988 25 6 7.6695 -4.3453 -2.1225 26 6 3.9975 -4.8928 0.9606 27 6 3.1455 -3.6148 1.0150 28 1 -0.4850 0.8401 0.0004 29 1 0.5639 -2.5220 -0.8453 30 1 0.6879 -2.5935 0.9289 31 1 3.5584 -2.7017 -1.4311 32 1 2.1830 -3.5208 -2.2100 33 1 4.3652 -4.7725 -2.4493 34 1 3.0962 -5.7145 -1.6229 35 1 5.2040 -6.6253 -2.6447 36 1 6.2146 -6.6359 -4.8799 37 1 8.1344 -5.2285 -5.3941 38 1 9.8118 -3.5140 -4.6475 39 1 9.6431 -2.1459 -0.7262 40 1 3.3654 -5.7653 1.1261 41 1 4.7739 -4.8496 1.7246 42 1 3.7923 -2.7400 0.9485 43 1 2.5919 -3.5879 1.9536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156614617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:09 Heat of formation + Delta-G solvation = 29.680979 kcal Electronic energy + Delta-G solvation = -27648.802711 eV Core-core repulsion = 23886.433712 eV Total energy + Delta-G solvation = -3762.369000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.52001 -41.12713 -39.10349 -38.41362 -36.07757 -35.20258 -34.39110 -32.91418 -32.02226 -31.41118 -29.84991 -27.34986 -26.26563 -25.50387 -24.95171 -24.45428 -23.64827 -21.91705 -20.37470 -19.83500 -19.10690 -18.52833 -18.15291 -17.65237 -16.80381 -16.72561 -16.44578 -16.09737 -16.01789 -15.91295 -15.57732 -15.46796 -15.00287 -14.93085 -14.51890 -14.31934 -13.86278 -13.66660 -13.56057 -13.24696 -13.12740 -12.99640 -12.88395 -12.59349 -12.53046 -12.28640 -12.24730 -12.02260 -11.92173 -11.85839 -11.67434 -11.04304 -10.66564 -10.29385 -10.23981 -9.83705 -9.47433 -9.12235 -8.23099 -6.41299 -0.96966 -0.39418 0.60297 1.27075 1.30056 1.40493 1.52941 1.81978 2.05849 2.30113 2.96900 3.02102 3.03778 3.13429 3.22964 3.26519 3.49788 3.69685 3.82020 3.96813 4.03468 4.12441 4.19080 4.30095 4.31444 4.43076 4.45644 4.58978 4.64664 4.69395 4.76566 4.82655 4.98241 5.07134 5.11848 5.17079 5.19958 5.27419 5.29385 5.42601 5.61386 5.67940 5.94196 5.96617 6.11915 6.34158 6.38209 6.78495 7.03474 7.05379 7.30018 8.79566 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012314 B = 0.003926 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.344913 B = 7130.191121 C = 8076.209445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 0.948 3.052 4 H -0.282 1.282 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.558 4.558 8 H 0.042 0.958 9 C 0.201 3.799 10 N -0.530 5.530 11 C 0.050 3.950 12 C 0.114 3.886 13 N -0.605 5.605 14 C 0.564 3.436 15 O -0.571 6.571 16 C -0.154 4.154 17 C -0.029 4.029 18 C -0.121 4.121 19 C -0.032 4.032 20 C -0.185 4.185 21 C 0.212 3.788 22 N -0.547 5.547 23 C 0.292 3.708 24 N -0.545 5.545 25 C 0.158 3.842 26 C 0.128 3.872 27 C 0.056 3.944 28 H 0.267 0.733 29 H 0.019 0.981 30 H 0.009 0.991 31 H 0.005 0.995 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.164 0.836 36 H 0.188 0.812 37 H 0.193 0.807 38 H 0.229 0.771 39 H 0.205 0.795 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.006 0.994 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.990 -14.571 -15.107 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.774 3.226 4 H -0.207 1.207 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.597 4.597 8 H 0.060 0.940 9 C 0.074 3.926 10 N -0.254 5.254 11 C -0.079 4.079 12 C -0.008 4.008 13 N -0.337 5.337 14 C 0.353 3.647 15 O -0.451 6.451 16 C -0.158 4.158 17 C -0.050 4.050 18 C -0.139 4.139 19 C -0.052 4.052 20 C -0.189 4.189 21 C 0.033 3.967 22 N -0.260 5.260 23 C 0.004 3.996 24 N -0.259 5.259 25 C 0.030 3.970 26 C 0.005 3.995 27 C -0.073 4.073 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.181 0.819 36 H 0.205 0.795 37 H 0.211 0.789 38 H 0.246 0.754 39 H 0.221 0.779 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.025 0.975 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.187 -14.412 -13.670 25.005 hybrid contribution 0.211 1.924 0.392 1.975 sum 15.397 -12.489 -13.278 23.861 Atomic orbital electron populations 1.70032 1.07099 1.27854 1.50794 1.25653 0.95559 1.02244 0.94502 0.85668 0.78356 0.80265 0.78334 1.20681 1.19642 1.19984 1.21931 0.92748 0.93462 1.51577 0.93998 1.19448 0.91011 0.86072 0.96048 1.62461 1.16697 1.44434 1.01767 1.22301 0.96578 0.96005 0.93065 1.22291 0.92508 0.98443 0.87519 1.48203 1.06430 1.70418 1.08651 1.18385 0.81398 0.75818 0.89054 1.90729 1.62315 1.51051 1.40981 1.19681 0.98285 1.02914 0.94894 1.22022 0.97576 0.93614 0.91779 1.21464 0.96052 1.00091 0.96264 1.21737 0.93837 0.90387 0.99221 1.19874 1.00740 1.03157 0.95177 1.24623 0.88175 0.84734 0.99201 1.68405 1.32077 1.23645 1.01874 1.25274 0.87859 0.92947 0.93567 1.68756 1.12890 1.08088 1.36179 1.18977 0.93880 0.93488 0.90629 1.21780 0.95713 0.97946 0.84057 1.22280 0.93973 0.95493 0.95556 0.92390 0.96303 0.97319 0.97650 0.89446 0.87613 0.87500 0.81853 0.79463 0.78944 0.75435 0.77896 0.88610 0.90382 0.97541 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.11 13.29 21.45 0.28 -53.82 16 2 C 0.02 1.17 5.46 84.65 0.46 1.64 16 3 Si 0.95 45.22 29.54 68.60 2.03 47.24 16 4 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.56 -31.53 7.76 25.60 0.20 -31.33 16 8 H 0.04 2.45 5.87 -2.91 -0.02 2.44 16 9 C 0.20 10.40 5.11 85.56 0.44 10.83 16 10 N -0.53 -22.28 4.83 -898.90 -4.34 -26.62 16 11 C 0.05 1.83 5.24 86.38 0.45 2.29 16 12 C 0.11 3.06 5.56 86.35 0.48 3.54 16 13 N -0.60 -19.70 3.00 -820.91 -2.47 -22.17 16 14 C 0.56 19.90 6.93 86.66 0.60 20.50 16 15 O -0.57 -24.74 16.22 -4.04 -0.07 -24.81 16 16 C -0.15 -4.28 4.95 -19.91 -0.10 -4.37 16 17 C -0.03 -0.46 7.41 22.58 0.17 -0.29 16 18 C -0.12 -1.01 9.93 22.00 0.22 -0.79 16 19 C -0.03 -0.27 9.79 22.35 0.22 -0.06 16 20 C -0.19 -3.45 5.74 -21.31 -0.12 -3.57 16 21 C 0.21 3.38 11.16 85.29 0.95 4.33 16 22 N -0.55 -12.71 10.39 -198.61 -2.06 -14.77 16 23 C 0.29 8.25 12.23 180.84 2.21 10.46 16 24 N -0.55 -18.93 9.69 -193.03 -1.87 -20.80 16 25 C 0.16 4.63 6.60 40.55 0.27 4.90 16 26 C 0.13 4.36 6.62 86.50 0.57 4.93 16 27 C 0.06 2.30 5.18 86.54 0.45 2.75 16 28 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.02 1.03 8.08 -2.39 -0.02 1.01 16 30 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.01 0.23 7.07 -2.39 -0.02 0.21 16 32 H 0.09 3.05 8.06 -2.39 -0.02 3.03 16 33 H 0.11 2.31 4.84 -2.38 -0.01 2.30 16 34 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.16 1.85 7.23 -2.91 -0.02 1.83 16 36 H 0.19 -0.09 8.06 -2.91 -0.02 -0.11 16 37 H 0.19 -0.29 8.06 -2.91 -0.02 -0.31 16 38 H 0.23 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.20 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 41 H 0.08 2.84 7.08 -2.38 -0.02 2.82 16 42 H 0.01 0.30 6.65 -2.39 -0.02 0.29 16 43 H 0.08 3.15 8.11 -2.38 -0.02 3.13 16 Total: -1.00 -84.76 351.91 0.01 -84.75 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: 1.04 Total: 5.25 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 7.47 Total: 25.75 kcal Atomic # 7 Polarization: -127.73 SS G_CDS: -10.45 Total: -138.18 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.07 Total: -24.81 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -84.76 0.01 -84.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156614617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.428 kcal (2) G-P(sol) polarization free energy of solvation -84.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds