Wall clock time and date at job start Tue Mar 31 2020 14:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99622 * 2 1 4 4 O 1.20817 * 120.00481 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99362 * 179.97438 * 3 2 1 6 6 C 1.50704 * 109.46883 * 179.97438 * 5 3 2 7 7 C 1.38236 * 119.99572 * 269.72922 * 6 5 3 8 8 C 1.38235 * 119.99781 * 180.30160 * 7 6 5 9 9 C 1.38244 * 120.00047 * 359.97438 * 8 7 6 10 10 C 1.50696 * 120.00090 * 180.02562 * 9 8 7 11 11 N 1.46501 * 109.47373 * 269.97982 * 10 9 8 12 12 C 1.39077 * 120.00268 * 180.02562 * 11 10 9 13 13 C 1.38747 * 119.65797 * 359.97438 * 12 11 10 14 14 C 1.40776 * 118.66754 * 179.97438 * 13 12 11 15 15 C 1.41547 * 120.98999 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00140 * 23.18621 * 15 14 13 17 17 C 1.40028 * 120.00231 * 203.17669 * 15 14 13 18 18 N 1.30753 * 119.99647 * 17.31659 * 17 15 14 19 19 Si 1.86797 * 120.00532 * 197.30920 * 17 15 14 20 20 H 1.48497 * 109.46903 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47158 * 120.00310 * 19 17 15 22 22 H 1.48495 * 109.47597 * 240.00474 * 19 17 15 23 23 C 1.41189 * 118.01590 * 0.02562 * 14 13 12 24 24 C 1.36557 * 119.14483 * 359.97438 * 23 14 13 25 25 N 1.32092 * 121.26668 * 359.72021 * 24 23 14 26 26 C 1.38231 * 119.99786 * 359.97438 * 9 8 7 27 27 C 1.38233 * 120.00183 * 89.99614 * 6 5 3 28 28 H 1.08995 * 109.47193 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47054 * 300.00577 * 1 2 3 30 30 H 1.09004 * 109.46609 * 60.00302 * 1 2 3 31 31 H 1.08997 * 109.47302 * 59.99995 * 5 3 2 32 32 H 1.08995 * 109.47039 * 299.99664 * 5 3 2 33 33 H 1.07994 * 120.00465 * 0.26970 * 7 6 5 34 34 H 1.07999 * 120.00261 * 179.97438 * 8 7 6 35 35 H 1.09005 * 109.47423 * 29.97333 * 10 9 8 36 36 H 1.09000 * 109.47075 * 149.97737 * 10 9 8 37 37 H 0.97003 * 119.99591 * 359.97438 * 11 10 9 38 38 H 1.07995 * 120.66362 * 0.03174 * 13 12 11 39 39 H 0.97001 * 119.99910 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.42419 * 179.97438 * 23 14 13 41 41 H 1.08002 * 119.36249 * 179.97438 * 24 23 14 42 42 H 1.07998 * 120.00057 * 180.02562 * 26 9 8 43 43 H 1.07999 * 119.99710 * 359.72645 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 3.9937 2.7200 -0.0002 7 6 4.1955 3.3804 -1.1977 8 6 4.5935 4.7042 -1.1984 9 6 4.7891 5.3678 -0.0016 10 6 5.2224 6.8112 -0.0024 11 7 6.6857 6.8818 0.0019 12 6 7.3223 8.1183 0.0026 13 6 6.5645 9.2806 -0.0014 14 6 7.2304 10.5209 -0.0001 15 6 6.5061 11.7370 -0.0044 16 1 5.4895 11.7614 0.3596 17 6 7.1075 12.9085 -0.4806 18 7 8.1824 12.8369 -1.2215 19 14 6.3740 14.5735 -0.0575 20 1 5.1682 14.3828 0.7879 21 1 7.3752 15.3815 0.6840 22 1 5.9958 15.2800 -1.3077 23 6 8.6423 10.5157 0.0047 24 6 9.3029 9.3205 0.0083 25 7 8.6464 8.1743 0.0129 26 6 4.5862 4.7078 1.1959 27 6 4.1891 3.3837 1.1966 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 4.0429 2.8620 -2.1327 34 1 4.7517 5.2201 -2.1340 35 1 4.8375 7.3057 -0.8943 36 1 4.8321 7.3082 0.8857 37 1 7.2106 6.0661 0.0050 38 1 5.4856 9.2346 -0.0044 39 1 8.5993 13.6484 -1.5510 40 1 9.1927 11.4449 0.0054 41 1 10.3829 9.3124 0.0114 42 1 4.7386 5.2263 2.1309 43 1 4.0312 2.8677 2.1321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157769327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:00 Heat of formation + Delta-G solvation = -33.331475 kcal Electronic energy + Delta-G solvation = -25330.930382 eV Core-core repulsion = 21533.536207 eV Total energy + Delta-G solvation = -3797.394176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.88678 -39.49628 -38.33906 -36.84393 -35.41365 -33.99650 -32.85338 -31.02178 -30.59178 -29.77373 -28.14988 -27.07643 -25.85715 -24.66858 -22.83568 -22.02286 -21.21808 -20.78236 -20.36768 -17.98100 -17.65369 -17.06441 -16.92928 -16.37502 -15.60692 -15.59380 -15.19230 -14.94225 -14.76919 -14.01326 -13.94538 -13.91426 -13.56874 -13.44282 -13.25455 -13.18568 -12.61278 -12.52486 -12.45915 -12.31702 -12.17363 -11.91066 -11.37523 -11.18542 -11.17389 -11.06129 -11.05312 -10.85098 -10.79758 -10.25956 -9.80542 -9.39816 -8.98079 -8.90380 -8.77782 -7.93002 -7.87332 -6.81593 -6.43044 -4.52805 1.06822 1.35973 1.88175 2.41995 2.80576 3.05388 3.09636 3.11414 3.38017 3.60521 3.89901 4.25069 4.33702 4.54898 4.62473 4.72349 4.73360 4.79921 4.86356 4.91853 4.93890 5.08517 5.14533 5.40176 5.47268 5.72451 5.77695 5.85893 5.97588 6.04751 6.05128 6.17971 6.29052 6.38654 6.64557 6.79577 6.89329 6.93351 6.99217 7.03513 7.30552 7.41398 7.59104 7.86822 8.07998 8.13173 8.47823 8.74275 8.86600 8.93784 9.81425 10.13175 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024223 B = 0.001962 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.626306 B =14268.110883 C =15040.110199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.458 3.542 4 O -0.493 6.493 5 C -0.070 4.070 6 C -0.084 4.084 7 C -0.105 4.105 8 C -0.098 4.098 9 C -0.087 4.087 10 C 0.179 3.821 11 N -0.740 5.740 12 C 0.398 3.602 13 C -0.336 4.336 14 C 0.155 3.845 15 C -0.456 4.456 16 H 0.079 0.921 17 C 0.079 3.921 18 N -0.783 5.783 19 Si 0.909 3.091 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.246 4.246 24 C 0.116 3.884 25 N -0.624 5.624 26 C -0.099 4.099 27 C -0.105 4.105 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.390 0.610 38 H 0.097 0.903 39 H 0.281 0.719 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.126 0.874 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.646 -21.256 1.657 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.300 3.700 4 O -0.379 6.379 5 C -0.107 4.107 6 C -0.084 4.084 7 C -0.123 4.123 8 C -0.117 4.117 9 C -0.087 4.087 10 C 0.054 3.946 11 N -0.377 5.377 12 C 0.167 3.833 13 C -0.363 4.363 14 C 0.147 3.853 15 C -0.487 4.487 16 H 0.098 0.902 17 C -0.141 4.141 18 N -0.409 5.409 19 Si 0.733 3.267 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.270 4.270 24 C -0.034 4.034 25 N -0.348 5.348 26 C -0.117 4.117 27 C -0.123 4.123 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.224 0.776 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.144 0.856 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.411 -21.492 1.528 23.929 hybrid contribution -0.822 1.371 0.039 1.599 sum -11.232 -20.121 1.567 23.097 Atomic orbital electron populations 1.23269 0.76223 1.03661 1.02689 1.86500 1.23553 1.33605 1.84402 1.23770 0.92020 0.81385 0.72828 1.90724 1.66998 1.36217 1.44005 1.20299 0.87721 0.96008 1.06714 1.19194 1.01433 0.93705 0.94054 1.20932 0.99506 0.94815 0.97063 1.21104 0.98343 0.94212 0.98040 1.20078 0.99200 0.96155 0.93275 1.19981 0.81855 0.90837 1.01894 1.44074 1.03413 1.05256 1.84935 1.17927 0.88779 0.84526 0.92042 1.21126 0.97993 0.91779 1.25389 1.17609 0.91854 0.91707 0.84166 1.19613 1.00237 0.91944 1.36875 0.90242 1.25972 0.94219 1.01550 0.92352 1.69822 1.17308 1.30964 1.22760 0.86247 0.80203 0.80936 0.79272 1.18311 1.19597 1.19924 1.21780 0.95299 0.97936 1.12003 1.21351 0.97490 0.87935 0.96576 1.66733 1.07391 1.30584 1.30054 1.21089 0.98416 0.94230 0.97990 1.20927 0.99543 0.94792 0.97066 0.88082 0.91853 0.91842 0.86703 0.86702 0.86132 0.85537 0.91833 0.91902 0.77619 0.88495 0.90795 0.85928 0.86478 0.85573 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.00 10.57 -39.26 -0.41 -3.42 16 3 C 0.46 4.38 7.95 36.01 0.29 4.67 16 4 O -0.49 -6.49 15.78 -18.74 -0.30 -6.78 16 5 C -0.07 -0.50 5.94 -29.03 -0.17 -0.68 16 6 C -0.08 -0.85 4.37 -104.62 -0.46 -1.31 16 7 C -0.11 -1.14 9.70 -39.58 -0.38 -1.53 16 8 C -0.10 -1.23 9.70 -39.58 -0.38 -1.61 16 9 C -0.09 -1.17 5.25 -104.62 -0.55 -1.72 16 10 C 0.18 2.88 5.02 -5.20 -0.03 2.85 16 11 N -0.74 -14.08 5.72 -61.65 -0.35 -14.43 16 12 C 0.40 9.46 7.65 -154.98 -1.19 8.28 16 13 C -0.34 -8.49 9.12 -38.43 -0.35 -8.84 16 14 C 0.15 4.22 5.61 -106.56 -0.60 3.63 16 15 C -0.46 -12.15 9.12 -37.65 -0.34 -12.49 16 16 H 0.08 2.04 7.90 -52.48 -0.41 1.63 16 17 C 0.08 1.97 5.20 -17.34 -0.09 1.88 16 18 N -0.78 -20.15 10.90 55.55 0.61 -19.54 16 19 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 20 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 C -0.25 -6.53 8.75 -39.07 -0.34 -6.87 16 24 C 0.12 2.88 11.10 -18.05 -0.20 2.68 16 25 N -0.62 -15.54 10.37 -12.82 -0.13 -15.67 16 26 C -0.10 -1.22 9.70 -39.59 -0.38 -1.60 16 27 C -0.11 -1.13 9.70 -39.58 -0.38 -1.52 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.11 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.11 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 35 H 0.06 1.05 7.87 -51.93 -0.41 0.64 16 36 H 0.06 1.02 7.87 -51.93 -0.41 0.61 16 37 H 0.39 7.02 8.59 -40.82 -0.35 6.67 16 38 H 0.10 2.30 6.71 -52.49 -0.35 1.95 16 39 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 40 H 0.12 3.30 6.16 -52.48 -0.32 2.98 16 41 H 0.12 2.57 8.06 -52.49 -0.42 2.14 16 42 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -32.16 372.96 -10.11 -42.28 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.61 Total: 11.38 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -4.50 Total: -12.90 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.12 Total: -49.64 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.71 Total: -10.20 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.16 -10.11 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157769327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.945 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds