Wall clock time and date at job start Tue Mar 31 2020 14:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99622 * 2 1 4 4 O 1.20817 * 120.00481 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99362 * 179.97438 * 3 2 1 6 6 C 1.50704 * 109.46883 * 179.97438 * 5 3 2 7 7 C 1.38236 * 119.99572 * 269.72922 * 6 5 3 8 8 C 1.38235 * 119.99781 * 180.30160 * 7 6 5 9 9 C 1.38244 * 120.00047 * 359.97438 * 8 7 6 10 10 C 1.50696 * 120.00090 * 180.02562 * 9 8 7 11 11 N 1.46501 * 109.47373 * 269.97982 * 10 9 8 12 12 C 1.39077 * 120.00268 * 180.02562 * 11 10 9 13 13 C 1.38747 * 119.65797 * 359.97438 * 12 11 10 14 14 C 1.40776 * 118.66754 * 179.97438 * 13 12 11 15 15 C 1.41547 * 120.98999 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00140 * 23.18621 * 15 14 13 17 17 C 1.40028 * 120.00231 * 203.17669 * 15 14 13 18 18 N 1.30753 * 119.99647 * 17.31659 * 17 15 14 19 19 Si 1.86797 * 120.00532 * 197.30920 * 17 15 14 20 20 H 1.48497 * 109.46903 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47158 * 120.00310 * 19 17 15 22 22 H 1.48495 * 109.47597 * 240.00474 * 19 17 15 23 23 C 1.41189 * 118.01590 * 0.02562 * 14 13 12 24 24 C 1.36557 * 119.14483 * 359.97438 * 23 14 13 25 25 N 1.32092 * 121.26668 * 359.72021 * 24 23 14 26 26 C 1.38231 * 119.99786 * 359.97438 * 9 8 7 27 27 C 1.38233 * 120.00183 * 89.99614 * 6 5 3 28 28 H 1.08995 * 109.47193 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47054 * 300.00577 * 1 2 3 30 30 H 1.09004 * 109.46609 * 60.00302 * 1 2 3 31 31 H 1.08997 * 109.47302 * 59.99995 * 5 3 2 32 32 H 1.08995 * 109.47039 * 299.99664 * 5 3 2 33 33 H 1.07994 * 120.00465 * 0.26970 * 7 6 5 34 34 H 1.07999 * 120.00261 * 179.97438 * 8 7 6 35 35 H 1.09005 * 109.47423 * 29.97333 * 10 9 8 36 36 H 1.09000 * 109.47075 * 149.97737 * 10 9 8 37 37 H 0.97003 * 119.99591 * 359.97438 * 11 10 9 38 38 H 1.07995 * 120.66362 * 0.03174 * 13 12 11 39 39 H 0.97001 * 119.99910 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.42419 * 179.97438 * 23 14 13 41 41 H 1.08002 * 119.36249 * 179.97438 * 24 23 14 42 42 H 1.07998 * 120.00057 * 180.02562 * 26 9 8 43 43 H 1.07999 * 119.99710 * 359.72645 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 3.9937 2.7200 -0.0002 7 6 4.1955 3.3804 -1.1977 8 6 4.5935 4.7042 -1.1984 9 6 4.7891 5.3678 -0.0016 10 6 5.2224 6.8112 -0.0024 11 7 6.6857 6.8818 0.0019 12 6 7.3223 8.1183 0.0026 13 6 6.5645 9.2806 -0.0014 14 6 7.2304 10.5209 -0.0001 15 6 6.5061 11.7370 -0.0044 16 1 5.4895 11.7614 0.3596 17 6 7.1075 12.9085 -0.4806 18 7 8.1824 12.8369 -1.2215 19 14 6.3740 14.5735 -0.0575 20 1 5.1682 14.3828 0.7879 21 1 7.3752 15.3815 0.6840 22 1 5.9958 15.2800 -1.3077 23 6 8.6423 10.5157 0.0047 24 6 9.3029 9.3205 0.0083 25 7 8.6464 8.1743 0.0129 26 6 4.5862 4.7078 1.1959 27 6 4.1891 3.3837 1.1966 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 4.0429 2.8620 -2.1327 34 1 4.7517 5.2201 -2.1340 35 1 4.8375 7.3057 -0.8943 36 1 4.8321 7.3082 0.8857 37 1 7.2106 6.0661 0.0050 38 1 5.4856 9.2346 -0.0044 39 1 8.5993 13.6484 -1.5510 40 1 9.1927 11.4449 0.0054 41 1 10.3829 9.3124 0.0114 42 1 4.7386 5.2263 2.1309 43 1 4.0312 2.8677 2.1321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157769327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:59 Heat of formation + Delta-G solvation = -50.544582 kcal Electronic energy + Delta-G solvation = -25331.676799 eV Core-core repulsion = 21533.536207 eV Total energy + Delta-G solvation = -3798.140592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61190 -40.56447 -40.04174 -37.60831 -36.87869 -35.77008 -33.97134 -32.55164 -31.90130 -30.94618 -29.32658 -28.05691 -27.82963 -25.86245 -23.71950 -23.39969 -22.78548 -22.28928 -21.34044 -19.51643 -18.66108 -18.05304 -17.65810 -17.60561 -17.09366 -16.60227 -16.51500 -16.46329 -16.01221 -15.74864 -15.15191 -15.00049 -14.71393 -14.57095 -14.49784 -14.30760 -14.22425 -13.68857 -13.65015 -13.30156 -13.14010 -12.94410 -12.92507 -12.84202 -12.73372 -12.07259 -11.98624 -11.93050 -11.79827 -11.75826 -11.59203 -11.26003 -10.67455 -9.93202 -9.85868 -9.84649 -9.70153 -8.70933 -8.24704 -6.55193 0.16032 0.47046 0.96982 1.18465 1.18947 1.38824 1.54201 1.59524 1.80155 2.19137 2.50580 2.80078 2.99661 3.53237 3.78734 3.79785 3.85372 4.02730 4.08177 4.17786 4.24176 4.31731 4.32779 4.48315 4.53552 4.60535 4.64987 4.72323 4.76936 4.90153 4.98443 5.00810 5.05464 5.12334 5.15305 5.31504 5.37522 5.40868 5.54210 5.62458 5.65914 5.90889 6.01682 6.11923 6.36539 6.54767 6.73736 6.86564 6.89919 7.04947 7.87952 8.26662 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024223 B = 0.001962 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.626306 B =14268.110883 C =15040.110199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.461 3.539 4 O -0.538 6.538 5 C -0.067 4.067 6 C -0.080 4.080 7 C -0.109 4.109 8 C -0.110 4.110 9 C -0.103 4.103 10 C 0.183 3.817 11 N -0.726 5.726 12 C 0.398 3.602 13 C -0.357 4.357 14 C 0.126 3.874 15 C -0.488 4.488 16 H 0.078 0.922 17 C 0.038 3.962 18 N -0.811 5.811 19 Si 0.988 3.012 20 H -0.258 1.258 21 H -0.261 1.261 22 H -0.263 1.263 23 C -0.270 4.270 24 C 0.117 3.883 25 N -0.634 5.634 26 C -0.109 4.109 27 C -0.109 4.109 28 H 0.132 0.868 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.125 0.875 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.397 0.603 38 H 0.102 0.898 39 H 0.292 0.708 40 H 0.113 0.887 41 H 0.145 0.855 42 H 0.128 0.872 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.291 -23.021 1.848 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.305 3.695 4 O -0.427 6.427 5 C -0.103 4.103 6 C -0.080 4.080 7 C -0.127 4.127 8 C -0.129 4.129 9 C -0.104 4.104 10 C 0.059 3.941 11 N -0.362 5.362 12 C 0.166 3.834 13 C -0.384 4.384 14 C 0.118 3.882 15 C -0.518 4.518 16 H 0.096 0.904 17 C -0.179 4.179 18 N -0.436 5.436 19 Si 0.807 3.193 20 H -0.182 1.182 21 H -0.185 1.185 22 H -0.188 1.188 23 C -0.295 4.295 24 C -0.033 4.033 25 N -0.358 5.358 26 C -0.127 4.127 27 C -0.126 4.126 28 H 0.150 0.850 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.143 0.857 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.232 0.768 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.131 0.869 41 H 0.163 0.837 42 H 0.145 0.855 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.070 -23.327 1.714 25.877 hybrid contribution -0.673 1.747 -0.049 1.873 sum -11.743 -21.580 1.664 24.624 Atomic orbital electron populations 1.23509 0.75117 1.05597 1.02266 1.86499 1.24690 1.32852 1.83878 1.24187 0.92807 0.81038 0.71441 1.90719 1.68096 1.37582 1.46290 1.20432 0.86123 0.94262 1.09529 1.19556 0.99720 0.95296 0.93455 1.21232 0.98735 0.94180 0.98545 1.21200 0.98889 0.95205 0.97586 1.19843 1.01378 0.94714 0.94446 1.20003 0.79894 0.93085 1.01165 1.44161 1.04710 1.03883 1.83396 1.18180 0.88654 0.85866 0.90669 1.21230 0.98404 0.91988 1.26733 1.18025 0.92649 0.92818 0.84710 1.19879 1.00602 0.93075 1.38258 0.90396 1.26877 0.94482 1.05094 0.91454 1.69857 1.18212 1.32730 1.22796 0.85084 0.79366 0.75525 0.79279 1.18174 1.18520 1.18799 1.21749 0.95242 0.98201 1.14316 1.21758 0.98878 0.87492 0.95147 1.66889 1.07779 1.30379 1.30790 1.21199 0.98798 0.95189 0.97555 1.21239 0.98697 0.94173 0.98537 0.84997 0.92302 0.92327 0.83880 0.83812 0.83899 0.85667 0.92680 0.92381 0.76817 0.88009 0.89700 0.86940 0.83749 0.85451 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.10 10.57 -51.43 -0.54 -5.64 16 3 C 0.46 7.76 7.95 71.24 0.57 8.33 16 4 O -0.54 -13.52 15.78 21.99 0.35 -13.17 16 5 C -0.07 -0.72 5.94 29.10 0.17 -0.55 16 6 C -0.08 -1.43 4.37 -19.86 -0.09 -1.52 16 7 C -0.11 -2.17 9.70 22.27 0.22 -1.95 16 8 C -0.11 -2.70 9.70 22.27 0.22 -2.48 16 9 C -0.10 -2.79 5.25 -19.87 -0.10 -2.90 16 10 C 0.18 6.01 5.02 85.63 0.43 6.44 16 11 N -0.73 -27.93 5.72 -348.97 -2.00 -29.93 16 12 C 0.40 19.30 7.65 132.90 1.02 20.32 16 13 C -0.36 -18.64 9.12 23.01 0.21 -18.43 16 14 C 0.13 7.12 5.61 -21.12 -0.12 7.00 16 15 C -0.49 -26.79 9.12 23.52 0.21 -26.58 16 16 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 17 C 0.04 1.93 5.20 85.29 0.44 2.38 16 18 N -0.81 -42.25 10.90 21.84 0.24 -42.02 16 19 Si 0.99 37.86 29.59 68.60 2.03 39.89 16 20 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 21 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 23 C -0.27 -14.80 8.75 22.60 0.20 -14.60 16 24 C 0.12 5.88 11.10 84.26 0.94 6.82 16 25 N -0.63 -31.79 10.37 -194.47 -2.02 -33.81 16 26 C -0.11 -2.61 9.70 22.27 0.22 -2.40 16 27 C -0.11 -2.13 9.70 22.27 0.22 -1.91 16 28 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 30 H 0.06 0.66 8.13 -2.39 -0.02 0.65 16 31 H 0.14 0.80 8.08 -2.39 -0.02 0.78 16 32 H 0.14 0.79 8.09 -2.39 -0.02 0.77 16 33 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 34 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 35 H 0.05 1.90 7.87 -2.38 -0.02 1.88 16 36 H 0.06 1.96 7.87 -2.39 -0.02 1.94 16 37 H 0.40 14.23 8.59 -92.71 -0.80 13.43 16 38 H 0.10 5.05 6.71 -2.91 -0.02 5.03 16 39 H 0.29 13.54 8.29 -92.71 -0.77 12.77 16 40 H 0.11 6.28 6.16 -2.91 -0.02 6.26 16 41 H 0.15 6.28 8.06 -2.91 -0.02 6.25 16 42 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 43 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -71.22 372.96 4.24 -66.98 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: 0.24 Total: 38.25 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 5.94 Total: -20.54 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -3.78 Total: -105.76 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.20 Total: -18.82 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -71.22 4.24 -66.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157769327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.432 kcal (2) G-P(sol) polarization free energy of solvation -71.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds