Wall clock time and date at job start Tue Mar 31 2020 14:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36929 * 119.99902 * 2 1 4 4 H 1.08005 * 120.00090 * 210.99862 * 3 2 1 5 5 C 1.38810 * 120.00050 * 30.99890 * 3 2 1 6 6 N 1.31616 * 120.00089 * 6.60284 * 5 3 2 7 7 Si 1.86807 * 120.00104 * 186.60049 * 5 3 2 8 8 H 1.48508 * 109.46726 * 5.00600 * 7 5 3 9 9 H 1.48496 * 109.46969 * 124.99757 * 7 5 3 10 10 H 1.48493 * 109.47139 * 245.00430 * 7 5 3 11 11 C 1.46500 * 119.99969 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47311 * 271.23554 * 11 2 1 13 13 H 1.09002 * 109.58846 * 296.89421 * 12 11 2 14 14 C 1.53190 * 109.70471 * 57.25187 * 12 11 2 15 15 C 1.53040 * 109.31376 * 174.49077 * 14 12 11 16 16 C 1.53031 * 109.54181 * 298.63484 * 15 14 12 17 17 C 1.52761 * 109.38417 * 61.23631 * 16 15 14 18 18 N 1.46924 * 109.58777 * 176.61222 * 12 11 2 19 19 C 1.34777 * 120.63075 * 6.43672 * 18 12 11 20 20 O 1.21280 * 120.00312 * 4.89567 * 19 18 12 21 21 C 1.50705 * 120.00213 * 184.89247 * 19 18 12 22 22 H 1.09001 * 109.46487 * 342.38922 * 21 19 18 23 23 F 1.39897 * 109.46994 * 102.38768 * 21 19 18 24 24 C 1.53002 * 109.47157 * 222.38948 * 21 19 18 25 25 F 1.39899 * 109.47147 * 54.73302 * 24 21 19 26 26 F 1.39905 * 109.46929 * 294.73110 * 24 21 19 27 27 F 1.39895 * 109.46813 * 174.73687 * 24 21 19 28 28 H 1.09005 * 109.46871 * 275.04739 * 1 2 3 29 29 H 1.08993 * 109.47435 * 35.04834 * 1 2 3 30 30 H 1.09007 * 109.47093 * 155.05041 * 1 2 3 31 31 H 0.96998 * 120.00032 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.46699 * 151.23263 * 11 2 1 33 33 H 1.09003 * 109.47387 * 31.23752 * 11 2 1 34 34 H 1.09000 * 109.49904 * 294.44510 * 14 12 11 35 35 H 1.09000 * 109.49629 * 54.50827 * 14 12 11 36 36 H 1.09005 * 109.45707 * 58.65793 * 15 14 12 37 37 H 1.09005 * 109.45814 * 178.62495 * 15 14 12 38 38 H 1.08999 * 109.50314 * 181.31426 * 16 15 14 39 39 H 1.09002 * 109.49723 * 301.38059 * 16 15 14 40 40 H 1.08997 * 109.51378 * 185.70959 * 17 16 15 41 41 H 1.09007 * 109.43093 * 65.42616 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1140 1.2527 -0.4817 5 6 1.6043 2.3021 0.6191 6 7 0.4936 2.1911 1.3166 7 14 2.4467 3.9621 0.4625 8 1 3.6004 3.8460 -0.4653 9 1 1.4824 4.9583 -0.0692 10 1 2.9270 4.4013 1.7972 11 6 2.1975 -1.2687 -0.0006 12 6 2.4256 -1.7266 1.4413 13 1 3.0512 -1.0006 1.9607 14 6 1.0797 -1.8535 2.1620 15 6 1.3058 -2.4421 3.5565 16 6 1.9191 -3.8383 3.4295 17 6 3.2694 -3.7366 2.7225 18 7 3.0882 -3.0380 1.4427 19 6 3.5165 -3.5922 0.2912 20 8 3.4371 -2.9707 -0.7472 21 6 4.0941 -4.9841 0.2940 22 1 4.3742 -5.2592 1.3108 23 9 3.1390 -5.8863 -0.1868 24 6 5.3317 -5.0245 -0.6047 25 9 6.2368 -4.0391 -0.1963 26 9 4.9530 -4.7893 -1.9308 27 9 5.9368 -6.2822 -0.5087 28 1 -0.3633 0.0904 1.0237 29 1 -0.3634 0.8412 -0.5901 30 1 -0.3634 -0.9318 -0.4335 31 1 0.1127 2.9710 1.7495 32 1 3.1593 -1.1327 -0.4951 33 1 1.6182 -2.0225 -0.5338 34 1 0.6213 -0.8687 2.2526 35 1 0.4222 -2.5097 1.5918 36 1 1.9829 -1.7976 4.1172 37 1 0.3524 -2.5106 4.0806 38 1 2.0582 -4.2663 4.4222 39 1 1.2535 -4.4765 2.8482 40 1 3.6613 -4.7372 2.5403 41 1 3.9653 -3.1778 3.3484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157978124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:51 Heat of formation + Delta-G solvation = -187.516130 kcal Electronic energy + Delta-G solvation = -30421.772571 eV Core-core repulsion = 25645.066482 eV Total energy + Delta-G solvation = -4776.706089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.47696 -48.59035 -47.89389 -47.65782 -40.44093 -37.43241 -35.56542 -33.05692 -32.27664 -30.89853 -29.99079 -26.86362 -25.78149 -24.84153 -24.20331 -22.37933 -21.10495 -20.58824 -19.60588 -18.96874 -18.64680 -18.27507 -17.41091 -16.64623 -16.52052 -15.58330 -15.25126 -14.85030 -14.66495 -14.64658 -14.54839 -14.44015 -14.31389 -14.25115 -14.03325 -13.94430 -13.89610 -13.32964 -13.28075 -12.89836 -12.78489 -12.73280 -12.49557 -11.76711 -11.59900 -11.10097 -11.04954 -10.90085 -10.75432 -10.71036 -10.47290 -10.33286 -10.09984 -9.91145 -9.76874 -9.13103 -8.49345 -8.43865 -6.61095 -5.70517 -3.24203 1.89490 2.24225 2.69667 3.20957 3.37901 3.45912 3.48964 3.53897 3.65462 3.77266 4.21463 4.52551 4.56104 4.68461 4.85585 5.03371 5.32123 5.39278 5.43848 5.44864 5.68299 5.85727 5.87988 5.97370 6.07406 6.11947 6.32517 6.44169 6.60130 6.80713 6.89300 6.94532 7.22454 7.32600 7.37563 7.77198 7.85553 7.93805 8.50099 9.28598 9.90081 10.43728 11.32330 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.004330 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.982897 B = 6464.348845 C = 7381.920748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.597 5.597 3 C -0.253 4.253 4 H 0.065 0.935 5 C 0.008 3.992 6 N -0.906 5.906 7 Si 0.901 3.099 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.160 3.840 12 C 0.123 3.877 13 H 0.079 0.921 14 C -0.126 4.126 15 C -0.120 4.120 16 C -0.133 4.133 17 C 0.096 3.904 18 N -0.585 5.585 19 C 0.490 3.510 20 O -0.482 6.482 21 C 0.027 3.973 22 H 0.144 0.856 23 F -0.155 7.155 24 C 0.448 3.552 25 F -0.165 7.165 26 F -0.155 7.155 27 F -0.174 7.174 28 H 0.037 0.963 29 H 0.034 0.966 30 H -0.004 1.004 31 H 0.251 0.749 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.310 -17.407 5.091 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.320 5.320 3 C -0.383 4.383 4 H 0.082 0.918 5 C -0.190 4.190 6 N -0.551 5.551 7 Si 0.731 3.269 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.033 3.967 12 C 0.020 3.980 13 H 0.097 0.903 14 C -0.164 4.164 15 C -0.158 4.158 16 C -0.172 4.172 17 C -0.027 4.027 18 N -0.319 5.319 19 C 0.271 3.729 20 O -0.355 6.355 21 C -0.014 4.014 22 H 0.162 0.838 23 F -0.136 7.136 24 C 0.392 3.608 25 F -0.147 7.147 26 F -0.136 7.136 27 F -0.155 7.155 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.015 0.985 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.143 -16.918 4.542 18.563 hybrid contribution 0.498 0.694 0.153 0.868 sum 6.642 -16.224 4.696 18.149 Atomic orbital electron populations 1.20915 0.83241 0.95278 0.99364 1.44109 1.01642 1.00962 1.85250 1.19234 1.03214 0.87337 1.28531 0.91765 1.25203 0.97793 0.98856 0.97174 1.69993 1.20909 1.28635 1.35520 0.86241 0.79017 0.84289 0.77377 1.20259 1.21679 1.21685 1.21533 0.97585 0.87483 0.90079 1.22768 0.92604 0.79457 1.03221 0.90306 1.22034 0.96899 1.03418 0.94012 1.21550 1.00736 0.95083 0.98418 1.21845 0.96115 0.98888 1.00313 1.21896 0.98731 0.96669 0.85423 1.48516 1.57048 1.21217 1.05128 1.19932 0.81196 0.86225 0.85507 1.90936 1.53045 1.60165 1.31327 1.23118 0.86520 0.91724 1.00069 0.83850 1.92998 1.64008 1.66879 1.89689 1.20334 0.84955 0.74272 0.81222 1.93257 1.69151 1.62075 1.90184 1.93306 1.90858 1.93962 1.35466 1.93230 1.84889 1.41262 1.96120 0.94514 0.94699 0.98509 0.93856 0.90973 0.93855 0.87674 0.92748 0.91834 0.91906 0.90824 0.91497 0.90670 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.83 7.85 59.85 0.47 4.30 16 2 N -0.60 -15.08 2.61 -181.12 -0.47 -15.55 16 3 C -0.25 -6.97 9.58 -15.06 -0.14 -7.12 16 4 H 0.06 1.79 7.84 -52.48 -0.41 1.38 16 5 C 0.01 0.23 5.23 -17.43 -0.09 0.14 16 6 N -0.91 -25.56 10.88 55.49 0.60 -24.95 16 7 Si 0.90 21.77 29.56 -169.99 -5.02 16.75 16 8 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 C 0.16 3.53 3.70 -4.04 -0.01 3.51 16 12 C 0.12 2.24 3.22 -67.60 -0.22 2.02 16 13 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 14 C -0.13 -2.14 4.44 -26.61 -0.12 -2.26 16 15 C -0.12 -1.55 5.88 -26.69 -0.16 -1.71 16 16 C -0.13 -1.32 6.06 -26.84 -0.16 -1.48 16 17 C 0.10 0.94 6.29 -3.93 -0.02 0.92 16 18 N -0.59 -8.44 2.98 -165.48 -0.49 -8.93 16 19 C 0.49 7.47 6.52 -10.98 -0.07 7.40 16 20 O -0.48 -9.27 11.30 5.56 0.06 -9.20 16 21 C 0.03 0.31 3.39 -27.88 -0.09 0.21 16 22 H 0.14 1.03 5.40 -51.93 -0.28 0.75 16 23 F -0.16 -1.93 16.98 2.25 0.04 -1.89 16 24 C 0.45 5.54 2.82 37.16 0.10 5.65 16 25 F -0.17 -2.14 16.89 2.25 0.04 -2.10 16 26 F -0.15 -2.32 16.16 2.25 0.04 -2.28 16 27 F -0.17 -1.90 17.32 2.25 0.04 -1.86 16 28 H 0.04 0.93 5.60 -51.93 -0.29 0.64 16 29 H 0.03 0.92 7.70 -51.93 -0.40 0.52 16 30 H 0.00 -0.08 7.85 -51.93 -0.41 -0.49 16 31 H 0.25 6.90 8.31 -40.82 -0.34 6.57 16 32 H 0.07 1.72 6.28 -51.93 -0.33 1.39 16 33 H 0.04 0.97 6.83 -51.93 -0.35 0.61 16 34 H 0.11 2.20 5.82 -51.93 -0.30 1.89 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.51 5.17 -51.93 -0.27 0.24 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -30.50 334.77 -5.78 -36.28 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -5.13 Total: -2.89 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -0.52 Total: 11.59 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.36 Total: -49.44 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.06 Total: -9.20 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 0.15 Total: -8.13 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.50 -5.78 -36.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157978124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.235 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds