Wall clock time and date at job start Tue Mar 31 2020 14:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36929 * 119.99902 * 2 1 4 4 H 1.08005 * 120.00090 * 210.99862 * 3 2 1 5 5 C 1.38810 * 120.00050 * 30.99890 * 3 2 1 6 6 N 1.31616 * 120.00089 * 6.60284 * 5 3 2 7 7 Si 1.86807 * 120.00104 * 186.60049 * 5 3 2 8 8 H 1.48508 * 109.46726 * 5.00600 * 7 5 3 9 9 H 1.48496 * 109.46969 * 124.99757 * 7 5 3 10 10 H 1.48493 * 109.47139 * 245.00430 * 7 5 3 11 11 C 1.46500 * 119.99969 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47311 * 271.23554 * 11 2 1 13 13 H 1.09002 * 109.58846 * 296.89421 * 12 11 2 14 14 C 1.53190 * 109.70471 * 57.25187 * 12 11 2 15 15 C 1.53040 * 109.31376 * 174.49077 * 14 12 11 16 16 C 1.53031 * 109.54181 * 298.63484 * 15 14 12 17 17 C 1.52761 * 109.38417 * 61.23631 * 16 15 14 18 18 N 1.46924 * 109.58777 * 176.61222 * 12 11 2 19 19 C 1.34777 * 120.63075 * 6.43672 * 18 12 11 20 20 O 1.21280 * 120.00312 * 4.89567 * 19 18 12 21 21 C 1.50705 * 120.00213 * 184.89247 * 19 18 12 22 22 H 1.09001 * 109.46487 * 342.38922 * 21 19 18 23 23 F 1.39897 * 109.46994 * 102.38768 * 21 19 18 24 24 C 1.53002 * 109.47157 * 222.38948 * 21 19 18 25 25 F 1.39899 * 109.47147 * 54.73302 * 24 21 19 26 26 F 1.39905 * 109.46929 * 294.73110 * 24 21 19 27 27 F 1.39895 * 109.46813 * 174.73687 * 24 21 19 28 28 H 1.09005 * 109.46871 * 275.04739 * 1 2 3 29 29 H 1.08993 * 109.47435 * 35.04834 * 1 2 3 30 30 H 1.09007 * 109.47093 * 155.05041 * 1 2 3 31 31 H 0.96998 * 120.00032 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.46699 * 151.23263 * 11 2 1 33 33 H 1.09003 * 109.47387 * 31.23752 * 11 2 1 34 34 H 1.09000 * 109.49904 * 294.44510 * 14 12 11 35 35 H 1.09000 * 109.49629 * 54.50827 * 14 12 11 36 36 H 1.09005 * 109.45707 * 58.65793 * 15 14 12 37 37 H 1.09005 * 109.45814 * 178.62495 * 15 14 12 38 38 H 1.08999 * 109.50314 * 181.31426 * 16 15 14 39 39 H 1.09002 * 109.49723 * 301.38059 * 16 15 14 40 40 H 1.08997 * 109.51378 * 185.70959 * 17 16 15 41 41 H 1.09007 * 109.43093 * 65.42616 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1140 1.2527 -0.4817 5 6 1.6043 2.3021 0.6191 6 7 0.4936 2.1911 1.3166 7 14 2.4467 3.9621 0.4625 8 1 3.6004 3.8460 -0.4653 9 1 1.4824 4.9583 -0.0692 10 1 2.9270 4.4013 1.7972 11 6 2.1975 -1.2687 -0.0006 12 6 2.4256 -1.7266 1.4413 13 1 3.0512 -1.0006 1.9607 14 6 1.0797 -1.8535 2.1620 15 6 1.3058 -2.4421 3.5565 16 6 1.9191 -3.8383 3.4295 17 6 3.2694 -3.7366 2.7225 18 7 3.0882 -3.0380 1.4427 19 6 3.5165 -3.5922 0.2912 20 8 3.4371 -2.9707 -0.7472 21 6 4.0941 -4.9841 0.2940 22 1 4.3742 -5.2592 1.3108 23 9 3.1390 -5.8863 -0.1868 24 6 5.3317 -5.0245 -0.6047 25 9 6.2368 -4.0391 -0.1963 26 9 4.9530 -4.7893 -1.9308 27 9 5.9368 -6.2822 -0.5087 28 1 -0.3633 0.0904 1.0237 29 1 -0.3634 0.8412 -0.5901 30 1 -0.3634 -0.9318 -0.4335 31 1 0.1127 2.9710 1.7495 32 1 3.1593 -1.1327 -0.4951 33 1 1.6182 -2.0225 -0.5338 34 1 0.6213 -0.8687 2.2526 35 1 0.4222 -2.5097 1.5918 36 1 1.9829 -1.7976 4.1172 37 1 0.3524 -2.5106 4.0806 38 1 2.0582 -4.2663 4.4222 39 1 1.2535 -4.4765 2.8482 40 1 3.6613 -4.7372 2.5403 41 1 3.9653 -3.1778 3.3484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157978124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:51 Heat of formation + Delta-G solvation = -205.622076 kcal Electronic energy + Delta-G solvation = -30422.557704 eV Core-core repulsion = 25645.066482 eV Total energy + Delta-G solvation = -4777.491222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.46167 -49.56083 -48.84549 -48.69713 -41.69565 -38.69420 -37.35816 -34.33802 -33.81100 -32.35092 -31.32875 -28.47524 -27.67507 -26.19844 -25.24325 -23.85718 -22.46592 -22.02945 -20.70118 -19.99453 -19.68118 -19.31020 -18.86558 -18.25227 -17.71252 -16.86780 -16.75604 -16.26652 -15.93044 -15.65574 -15.60575 -15.52333 -15.49025 -15.42187 -15.22828 -14.96345 -14.93787 -14.91186 -14.66282 -14.43546 -14.26902 -13.93408 -13.80694 -13.31321 -12.82488 -12.81557 -12.63653 -12.57457 -12.33140 -12.17720 -11.99197 -11.90391 -11.73603 -11.56857 -11.38179 -10.72192 -10.41425 -9.70728 -8.66737 -7.81666 -5.39205 0.84220 1.11428 1.43961 1.46134 1.56128 1.59322 2.24423 2.49762 2.61374 2.66556 2.83986 3.27314 3.31324 3.63442 3.72972 3.91564 3.96351 4.01065 4.11216 4.36189 4.43296 4.58697 4.64892 4.78010 4.83317 4.90661 5.02509 5.13142 5.18250 5.25721 5.27826 5.33099 5.48586 5.60026 5.66790 5.76466 6.13336 6.38335 6.74359 7.17702 7.86224 8.35165 9.18901 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.004330 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.982897 B = 6464.348845 C = 7381.920748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.612 5.612 3 C -0.269 4.269 4 H 0.053 0.947 5 C -0.034 4.034 6 N -0.926 5.926 7 Si 0.963 3.037 8 H -0.275 1.275 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.171 3.829 12 C 0.137 3.863 13 H 0.057 0.943 14 C -0.116 4.116 15 C -0.117 4.117 16 C -0.126 4.126 17 C 0.085 3.915 18 N -0.582 5.582 19 C 0.480 3.520 20 O -0.533 6.533 21 C 0.043 3.957 22 H 0.198 0.802 23 F -0.157 7.157 24 C 0.446 3.554 25 F -0.170 7.170 26 F -0.175 7.175 27 F -0.161 7.161 28 H 0.027 0.973 29 H 0.006 0.994 30 H 0.015 0.985 31 H 0.250 0.750 32 H 0.049 0.951 33 H 0.036 0.964 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.370 -19.599 7.128 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.336 5.336 3 C -0.399 4.399 4 H 0.071 0.929 5 C -0.231 4.231 6 N -0.571 5.571 7 Si 0.791 3.209 8 H -0.200 1.200 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.045 3.955 12 C 0.032 3.968 13 H 0.075 0.925 14 C -0.154 4.154 15 C -0.154 4.154 16 C -0.164 4.164 17 C -0.035 4.035 18 N -0.315 5.315 19 C 0.264 3.736 20 O -0.409 6.409 21 C 0.003 3.997 22 H 0.215 0.785 23 F -0.138 7.138 24 C 0.391 3.609 25 F -0.151 7.151 26 F -0.157 7.157 27 F -0.142 7.142 28 H 0.045 0.955 29 H 0.025 0.975 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.225 -19.168 6.613 21.525 hybrid contribution 0.188 1.318 -0.521 1.429 sum 7.413 -17.850 6.092 20.265 Atomic orbital electron populations 1.20668 0.83148 0.94906 0.98326 1.44245 1.01914 1.01593 1.85896 1.19347 1.03069 0.88752 1.28768 0.92915 1.25834 0.98447 1.01769 0.97033 1.70129 1.21782 1.29222 1.35987 0.85289 0.78000 0.80231 0.77401 1.19950 1.21662 1.21058 1.21339 0.95742 0.85987 0.92449 1.22055 0.93454 0.81364 0.99889 0.92469 1.21829 0.95472 1.01304 0.96812 1.21521 1.01690 0.97044 0.95175 1.21839 0.95548 0.96477 1.02510 1.22363 0.99559 0.98518 0.83096 1.48456 1.56050 1.19921 1.07089 1.20593 0.80573 0.87634 0.84824 1.90919 1.54987 1.61909 1.33089 1.23109 0.85378 0.88854 1.02373 0.78547 1.93004 1.64208 1.66542 1.90010 1.20485 0.85394 0.74534 0.80528 1.93251 1.69363 1.62399 1.90085 1.93269 1.91082 1.94153 1.37176 1.93257 1.84690 1.40310 1.95981 0.95493 0.97497 0.96610 0.94059 0.93266 0.94599 0.92036 0.93162 0.92073 0.90980 0.86915 0.91390 0.86414 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.91 7.85 127.77 1.00 9.91 16 2 N -0.61 -32.35 2.61 -726.94 -1.90 -34.24 16 3 C -0.27 -15.39 9.58 84.03 0.81 -14.59 16 4 H 0.05 3.08 7.84 -2.91 -0.02 3.05 16 5 C -0.03 -1.93 5.23 84.86 0.44 -1.49 16 6 N -0.93 -53.65 10.88 21.65 0.24 -53.41 16 7 Si 0.96 45.56 29.56 68.60 2.03 47.59 16 8 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 9 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 C 0.17 7.84 3.70 86.38 0.32 8.16 16 12 C 0.14 5.07 3.22 44.97 0.14 5.21 16 13 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 14 C -0.12 -3.97 4.44 30.67 0.14 -3.84 16 15 C -0.12 -2.77 5.88 30.62 0.18 -2.59 16 16 C -0.13 -1.92 6.06 30.53 0.19 -1.73 16 17 C 0.09 1.29 6.29 86.22 0.54 1.84 16 18 N -0.58 -15.75 2.98 -795.85 -2.37 -18.12 16 19 C 0.48 14.02 6.52 87.66 0.57 14.59 16 20 O -0.53 -20.92 11.30 -3.03 -0.03 -20.95 16 21 C 0.04 0.85 3.39 29.85 0.10 0.95 16 22 H 0.20 1.67 5.40 -2.39 -0.01 1.66 16 23 F -0.16 -3.43 16.98 44.97 0.76 -2.66 16 24 C 0.45 10.16 2.82 71.98 0.20 10.36 16 25 F -0.17 -4.11 16.89 44.97 0.76 -3.35 16 26 F -0.18 -5.19 16.16 44.97 0.73 -4.47 16 27 F -0.16 -3.07 17.32 44.97 0.78 -2.29 16 28 H 0.03 1.43 5.60 -2.38 -0.01 1.42 16 29 H 0.01 0.35 7.70 -2.39 -0.02 0.33 16 30 H 0.02 0.71 7.85 -2.38 -0.02 0.69 16 31 H 0.25 14.01 8.31 -92.71 -0.77 13.23 16 32 H 0.05 2.48 6.28 -2.39 -0.01 2.46 16 33 H 0.04 1.67 6.83 -2.39 -0.02 1.66 16 34 H 0.06 2.67 5.82 -2.39 -0.01 2.66 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.12 0.81 5.17 -2.39 -0.01 0.80 16 41 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -70.94 334.77 6.70 -64.24 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: 1.07 Total: 0.89 kcal Atomic # 6 Polarization: 22.14 SS G_CDS: 4.64 Total: 26.78 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -4.03 Total: -105.78 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.03 Total: -20.95 kcal Atomic # 9 Polarization: -15.80 SS G_CDS: 3.03 Total: -12.77 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -70.94 6.70 -64.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157978124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.379 kcal (2) G-P(sol) polarization free energy of solvation -70.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds