Wall clock time and date at job start Tue Mar 31 2020 14:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35897 * 116.99884 * 2 1 4 4 C 1.38658 * 119.90411 * 359.97438 * 3 2 1 5 5 C 1.38155 * 119.92324 * 179.97438 * 4 3 2 6 6 C 1.38037 * 120.01602 * 359.92188 * 5 4 3 7 7 C 1.39157 * 120.33484 * 0.02562 * 6 5 4 8 8 C 1.38311 * 119.72608 * 359.90864 * 7 6 5 9 9 C 1.50769 * 121.42290 * 179.30537 * 8 7 6 10 10 C 1.53068 * 109.61980 * 18.35813 * 9 8 7 11 11 H 1.09005 * 109.70101 * 71.28509 * 10 9 8 12 12 N 1.46501 * 109.73467 * 191.86800 * 10 9 8 13 13 C 1.39083 * 120.00352 * 203.85139 * 12 10 9 14 14 C 1.38745 * 119.65372 * 0.02562 * 13 12 10 15 15 C 1.40777 * 118.66754 * 179.97438 * 14 13 12 16 16 C 1.41553 * 120.99619 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99525 * 23.17461 * 16 15 14 18 18 C 1.40028 * 120.00431 * 203.17559 * 16 15 14 19 19 N 1.30744 * 119.99529 * 17.30783 * 18 16 15 20 20 Si 1.86798 * 120.00281 * 197.30472 * 18 16 15 21 21 H 1.48504 * 109.46911 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47000 * 119.99884 * 20 18 16 23 23 H 1.48497 * 109.47272 * 240.00435 * 20 18 16 24 24 C 1.41189 * 118.01684 * 359.97438 * 15 14 13 25 25 C 1.36557 * 119.14261 * 0.02562 * 24 15 14 26 26 N 1.32094 * 121.26764 * 359.72478 * 25 24 15 27 27 C 1.53405 * 108.29151 * 311.58900 * 10 9 8 28 28 O 1.35849 * 118.48245 * 180.30912 * 7 6 5 29 29 H 1.08996 * 109.47265 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46388 * 60.00813 * 1 2 3 31 31 H 1.08997 * 109.47461 * 300.00942 * 1 2 3 32 32 H 1.08000 * 120.03529 * 359.94756 * 4 3 2 33 33 H 1.07995 * 119.98834 * 179.90552 * 5 4 3 34 34 H 1.08006 * 119.83250 * 180.02562 * 6 5 4 35 35 H 1.08993 * 109.61919 * 258.21663 * 9 8 7 36 36 H 1.09003 * 109.27911 * 138.28490 * 9 8 7 37 37 H 0.96996 * 119.99995 * 23.86188 * 12 10 9 38 38 H 1.08002 * 120.66838 * 359.96923 * 14 13 12 39 39 H 0.97003 * 120.00125 * 179.97438 * 19 18 16 40 40 H 1.07993 * 120.42934 * 179.97438 * 24 15 14 41 41 H 1.07994 * 119.36805 * 179.97438 * 25 24 15 42 42 H 1.09000 * 109.67982 * 304.94149 * 27 10 9 43 43 H 1.09004 * 109.70947 * 184.40873 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2888 2.3725 -0.0005 5 6 1.9156 3.6037 0.0000 6 6 3.2940 3.6768 0.0027 7 6 4.0595 2.5146 0.0044 8 6 3.4336 1.2812 0.0052 9 6 4.2252 -0.0019 -0.0086 10 6 5.6643 0.2773 0.4321 11 1 5.6854 0.4983 1.4993 12 7 6.5026 -0.8914 0.1532 13 6 7.6738 -1.0954 0.8751 14 6 8.0411 -0.1878 1.8581 15 6 9.2304 -0.4148 2.5764 16 6 9.6522 0.4795 3.5893 17 1 8.9317 1.1145 4.0833 18 6 11.0036 0.5409 3.9508 19 7 11.9162 0.0470 3.1553 20 14 11.5027 1.3286 5.5694 21 1 10.2906 1.8078 6.2812 22 1 12.2079 0.3280 6.4102 23 1 12.4062 2.4767 5.3035 24 6 9.9899 -1.5612 2.2564 25 6 9.5480 -2.3983 1.2721 26 7 8.4242 -2.1577 0.6209 27 6 6.1835 1.4862 -0.3566 28 8 5.4130 2.6304 0.0134 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3634 0.5139 0.8898 32 1 0.2103 2.3148 -0.0018 33 1 1.3269 4.5090 -0.0020 34 1 3.7809 4.6409 0.0035 35 1 4.2287 -0.4189 -1.0156 36 1 3.7675 -0.7145 0.6776 37 1 6.2409 -1.5228 -0.5350 38 1 7.4271 0.6755 2.0680 39 1 12.8524 0.0899 3.4055 40 1 10.9089 -1.7729 2.7827 41 1 10.1263 -3.2759 1.0241 42 1 6.0756 1.3010 -1.4254 43 1 7.2331 1.6576 -0.1179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160133619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:57 Heat of formation + Delta-G solvation = -16.151631 kcal Electronic energy + Delta-G solvation = -26881.923832 eV Core-core repulsion = 23085.274630 eV Total energy + Delta-G solvation = -3796.649202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98860 -39.32230 -38.41033 -36.69602 -35.64734 -34.03438 -32.53767 -30.67807 -30.11053 -29.50503 -27.59595 -27.24770 -25.98148 -25.58803 -23.39516 -22.19435 -21.51331 -20.86088 -19.74198 -18.50121 -17.75956 -17.14926 -16.38921 -16.03939 -16.01672 -15.66268 -15.32428 -15.02569 -14.88201 -14.56634 -14.03327 -13.96584 -13.60659 -13.34706 -13.23266 -12.97192 -12.68491 -12.60527 -12.44215 -12.26572 -11.95932 -11.74615 -11.45765 -11.29087 -11.16167 -11.02648 -10.80980 -10.71454 -10.51315 -10.27198 -9.81698 -9.43199 -9.02369 -8.42118 -8.14326 -7.97424 -7.92401 -6.84975 -6.52439 -4.55974 1.21561 1.34000 2.78332 3.00117 3.02765 3.05530 3.10827 3.31927 3.33918 3.61066 3.88117 3.98032 4.61111 4.64399 4.70127 4.76965 4.89475 4.91721 5.01195 5.06870 5.19641 5.28420 5.30935 5.39110 5.46775 5.61010 5.78916 5.85365 6.00366 6.11490 6.15760 6.17612 6.22583 6.31409 6.50286 6.72671 6.88414 6.93091 6.99631 7.15480 7.26150 7.46802 7.54325 7.82248 8.01671 8.05888 8.42773 8.67473 8.83225 8.88477 9.75009 10.10175 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015934 B = 0.003002 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.857683 B = 9325.497536 C =10279.185982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.162 3.838 4 C -0.246 4.246 5 C -0.051 4.051 6 C -0.186 4.186 7 C 0.173 3.827 8 C -0.187 4.187 9 C -0.071 4.071 10 C 0.136 3.864 11 H 0.094 0.906 12 N -0.733 5.733 13 C 0.396 3.604 14 C -0.337 4.337 15 C 0.156 3.844 16 C -0.455 4.455 17 H 0.080 0.920 18 C 0.079 3.921 19 N -0.782 5.782 20 Si 0.909 3.091 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.244 4.244 25 C 0.115 3.885 26 N -0.623 5.623 27 C 0.044 3.956 28 O -0.305 6.305 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.392 0.608 38 H 0.099 0.901 39 H 0.282 0.718 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.064 0.936 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.997 4.390 -5.609 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.116 3.884 4 C -0.265 4.265 5 C -0.069 4.069 6 C -0.205 4.205 7 C 0.127 3.873 8 C -0.189 4.189 9 C -0.109 4.109 10 C 0.028 3.972 11 H 0.111 0.889 12 N -0.370 5.370 13 C 0.166 3.834 14 C -0.364 4.364 15 C 0.148 3.852 16 C -0.485 4.485 17 H 0.098 0.902 18 C -0.141 4.141 19 N -0.407 5.407 20 Si 0.733 3.267 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.268 4.268 25 C -0.034 4.034 26 N -0.346 5.346 27 C -0.033 4.033 28 O -0.217 6.217 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.226 0.774 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.817 3.877 -6.140 19.240 hybrid contribution 0.263 0.656 1.027 1.247 sum -17.554 4.533 -5.113 18.837 Atomic orbital electron populations 1.23059 0.78391 1.03901 1.01341 1.86076 1.21286 1.26851 1.88295 1.18566 0.90889 0.84266 0.94690 1.21035 0.99832 0.92202 1.13426 1.20640 0.93467 0.97076 0.95688 1.20515 0.93159 0.97061 1.09753 1.18514 0.83278 0.92202 0.93343 1.18988 0.91367 0.94686 1.13866 1.20497 0.93139 0.94414 1.02817 1.21207 0.89092 0.86200 1.00718 0.88858 1.43951 1.23517 1.26761 1.42784 1.17913 0.85802 0.90563 0.89169 1.21175 1.05112 1.04222 1.05852 1.17598 0.88964 0.90095 0.88582 1.19637 0.93058 1.19106 1.16741 0.90168 1.25971 0.96482 0.93949 0.97656 1.69812 1.02258 1.34560 1.34101 0.86243 0.79443 0.79282 0.81698 1.18257 1.19582 1.19865 1.21809 1.04194 0.97213 1.03601 1.21351 0.91342 0.97512 0.93154 1.66724 1.09964 1.22564 1.35338 1.23733 0.96195 0.84377 0.98966 1.86084 1.13896 1.38672 1.83050 0.88265 0.92666 0.92586 0.85477 0.85263 0.85020 0.90336 0.89339 0.77352 0.88320 0.90740 0.85864 0.86404 0.91764 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.59 9.64 -19.42 -0.19 -3.78 16 3 C 0.16 2.01 6.65 -39.16 -0.26 1.75 16 4 C -0.25 -2.56 9.03 -39.46 -0.36 -2.92 16 5 C -0.05 -0.51 10.03 -39.69 -0.40 -0.91 16 6 C -0.19 -2.27 9.93 -39.31 -0.39 -2.66 16 7 C 0.17 2.49 6.47 -39.21 -0.25 2.24 16 8 C -0.19 -2.61 5.76 -104.30 -0.60 -3.21 16 9 C -0.07 -0.99 4.97 -27.81 -0.14 -1.13 16 10 C 0.14 2.20 2.34 -67.68 -0.16 2.04 16 11 H 0.09 1.70 6.50 -51.93 -0.34 1.36 16 12 N -0.73 -13.46 5.27 -53.74 -0.28 -13.74 16 13 C 0.40 9.13 7.64 -154.98 -1.18 7.95 16 14 C -0.34 -8.32 8.67 -38.44 -0.33 -8.65 16 15 C 0.16 4.18 5.61 -106.55 -0.60 3.58 16 16 C -0.45 -12.01 9.12 -37.65 -0.34 -12.35 16 17 H 0.08 2.05 7.90 -52.48 -0.41 1.64 16 18 C 0.08 1.96 5.19 -17.34 -0.09 1.87 16 19 N -0.78 -19.88 10.90 55.55 0.61 -19.27 16 20 Si 0.91 18.39 29.59 -169.99 -5.03 13.36 16 21 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.24 -6.38 8.75 -39.07 -0.34 -6.72 16 25 C 0.12 2.82 11.10 -18.05 -0.20 2.62 16 26 N -0.62 -15.12 10.37 -12.82 -0.13 -15.26 16 27 C 0.04 0.69 6.54 37.37 0.24 0.93 16 28 O -0.31 -4.83 10.27 -19.26 -0.20 -5.03 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.32 7.65 -51.93 -0.40 -0.07 16 31 H 0.06 0.34 7.65 -51.93 -0.40 -0.05 16 32 H 0.13 0.99 6.28 -52.49 -0.33 0.66 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 35 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.09 1.26 7.83 -51.93 -0.41 0.85 16 37 H 0.39 6.61 8.70 -40.82 -0.35 6.25 16 38 H 0.10 2.33 6.21 -52.49 -0.33 2.00 16 39 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 40 H 0.12 3.28 6.16 -52.49 -0.32 2.95 16 41 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.12 2.07 7.81 -51.93 -0.41 1.66 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -29.73 354.53 -9.66 -39.38 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -5.36 Total: 13.37 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -4.41 Total: -14.39 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.19 Total: -48.27 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.38 Total: -8.81 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.73 -9.66 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160133619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.232 kcal (2) G-P(sol) polarization free energy of solvation -29.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds