Wall clock time and date at job start Tue Mar 31 2020 14:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35897 * 116.99884 * 2 1 4 4 C 1.38658 * 119.90411 * 359.97438 * 3 2 1 5 5 C 1.38155 * 119.92324 * 179.97438 * 4 3 2 6 6 C 1.38037 * 120.01602 * 359.92188 * 5 4 3 7 7 C 1.39157 * 120.33484 * 0.02562 * 6 5 4 8 8 C 1.38311 * 119.72608 * 359.90864 * 7 6 5 9 9 C 1.50769 * 121.42290 * 179.30537 * 8 7 6 10 10 C 1.53068 * 109.61980 * 18.35813 * 9 8 7 11 11 H 1.09005 * 109.70101 * 71.28509 * 10 9 8 12 12 N 1.46501 * 109.73467 * 191.86800 * 10 9 8 13 13 C 1.39083 * 120.00352 * 203.85139 * 12 10 9 14 14 C 1.38745 * 119.65372 * 0.02562 * 13 12 10 15 15 C 1.40777 * 118.66754 * 179.97438 * 14 13 12 16 16 C 1.41553 * 120.99619 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99525 * 23.17461 * 16 15 14 18 18 C 1.40028 * 120.00431 * 203.17559 * 16 15 14 19 19 N 1.30744 * 119.99529 * 17.30783 * 18 16 15 20 20 Si 1.86798 * 120.00281 * 197.30472 * 18 16 15 21 21 H 1.48504 * 109.46911 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47000 * 119.99884 * 20 18 16 23 23 H 1.48497 * 109.47272 * 240.00435 * 20 18 16 24 24 C 1.41189 * 118.01684 * 359.97438 * 15 14 13 25 25 C 1.36557 * 119.14261 * 0.02562 * 24 15 14 26 26 N 1.32094 * 121.26764 * 359.72478 * 25 24 15 27 27 C 1.53405 * 108.29151 * 311.58900 * 10 9 8 28 28 O 1.35849 * 118.48245 * 180.30912 * 7 6 5 29 29 H 1.08996 * 109.47265 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46388 * 60.00813 * 1 2 3 31 31 H 1.08997 * 109.47461 * 300.00942 * 1 2 3 32 32 H 1.08000 * 120.03529 * 359.94756 * 4 3 2 33 33 H 1.07995 * 119.98834 * 179.90552 * 5 4 3 34 34 H 1.08006 * 119.83250 * 180.02562 * 6 5 4 35 35 H 1.08993 * 109.61919 * 258.21663 * 9 8 7 36 36 H 1.09003 * 109.27911 * 138.28490 * 9 8 7 37 37 H 0.96996 * 119.99995 * 23.86188 * 12 10 9 38 38 H 1.08002 * 120.66838 * 359.96923 * 14 13 12 39 39 H 0.97003 * 120.00125 * 179.97438 * 19 18 16 40 40 H 1.07993 * 120.42934 * 179.97438 * 24 15 14 41 41 H 1.07994 * 119.36805 * 179.97438 * 25 24 15 42 42 H 1.09000 * 109.67982 * 304.94149 * 27 10 9 43 43 H 1.09004 * 109.70947 * 184.40873 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2888 2.3725 -0.0005 5 6 1.9156 3.6037 0.0000 6 6 3.2940 3.6768 0.0027 7 6 4.0595 2.5146 0.0044 8 6 3.4336 1.2812 0.0052 9 6 4.2252 -0.0019 -0.0086 10 6 5.6643 0.2773 0.4321 11 1 5.6854 0.4983 1.4993 12 7 6.5026 -0.8914 0.1532 13 6 7.6738 -1.0954 0.8751 14 6 8.0411 -0.1878 1.8581 15 6 9.2304 -0.4148 2.5764 16 6 9.6522 0.4795 3.5893 17 1 8.9317 1.1145 4.0833 18 6 11.0036 0.5409 3.9508 19 7 11.9162 0.0470 3.1553 20 14 11.5027 1.3286 5.5694 21 1 10.2906 1.8078 6.2812 22 1 12.2079 0.3280 6.4102 23 1 12.4062 2.4767 5.3035 24 6 9.9899 -1.5612 2.2564 25 6 9.5480 -2.3983 1.2721 26 7 8.4242 -2.1577 0.6209 27 6 6.1835 1.4862 -0.3566 28 8 5.4130 2.6304 0.0134 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3634 0.5139 0.8898 32 1 0.2103 2.3148 -0.0018 33 1 1.3269 4.5090 -0.0020 34 1 3.7809 4.6409 0.0035 35 1 4.2287 -0.4189 -1.0156 36 1 3.7675 -0.7145 0.6776 37 1 6.2409 -1.5228 -0.5350 38 1 7.4271 0.6755 2.0680 39 1 12.8524 0.0899 3.4055 40 1 10.9089 -1.7729 2.7827 41 1 10.1263 -3.2759 1.0241 42 1 6.0756 1.3010 -1.4254 43 1 7.2331 1.6576 -0.1179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160133619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:56 Heat of formation + Delta-G solvation = -33.257859 kcal Electronic energy + Delta-G solvation = -26882.665614 eV Core-core repulsion = 23085.274630 eV Total energy + Delta-G solvation = -3797.390983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.02695 -40.50013 -40.00329 -37.74499 -37.04547 -35.87076 -33.80435 -32.58830 -31.34400 -30.58485 -29.00018 -28.15078 -27.86338 -26.78609 -24.67652 -23.29637 -23.12957 -22.57989 -21.01637 -19.59720 -19.39600 -18.26395 -17.82513 -17.28992 -17.07982 -16.82410 -16.64745 -16.37995 -16.10410 -16.03097 -15.62340 -15.38827 -14.82709 -14.76305 -14.46159 -14.34012 -14.24271 -13.98072 -13.81977 -13.21621 -13.19411 -12.92813 -12.86820 -12.76113 -12.57270 -12.38277 -12.02296 -11.87660 -11.86400 -11.71644 -11.59497 -11.25548 -10.70711 -9.95250 -9.87239 -9.40261 -9.06566 -8.72525 -8.31951 -6.56718 0.29791 0.41906 0.95148 1.15055 1.38383 1.53551 1.58168 2.03406 2.18747 2.27671 2.55212 2.73371 2.78102 3.50345 3.55600 3.78070 3.85644 3.89108 4.03887 4.16839 4.22499 4.25864 4.37305 4.43511 4.47225 4.47820 4.58074 4.64319 4.77203 4.78794 4.88820 4.98104 5.00705 5.03486 5.12120 5.24735 5.27574 5.29853 5.45367 5.59726 5.63791 5.88042 6.09244 6.23999 6.34202 6.46548 6.52219 6.84942 6.86818 6.99466 7.83871 8.25190 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015934 B = 0.003002 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.857683 B = 9325.497536 C =10279.185982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.154 3.846 4 C -0.238 4.238 5 C -0.041 4.041 6 C -0.196 4.196 7 C 0.143 3.857 8 C -0.208 4.208 9 C -0.057 4.057 10 C 0.140 3.860 11 H 0.069 0.931 12 N -0.718 5.718 13 C 0.400 3.600 14 C -0.354 4.354 15 C 0.129 3.871 16 C -0.488 4.488 17 H 0.076 0.924 18 C 0.040 3.960 19 N -0.809 5.809 20 Si 0.986 3.014 21 H -0.259 1.259 22 H -0.260 1.260 23 H -0.263 1.263 24 C -0.269 4.269 25 C 0.117 3.883 26 N -0.630 5.630 27 C 0.053 3.947 28 O -0.321 6.321 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.140 0.860 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.403 0.597 38 H 0.099 0.901 39 H 0.293 0.707 40 H 0.113 0.887 41 H 0.146 0.854 42 H 0.079 0.921 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.207 5.179 -5.741 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.108 3.892 4 C -0.257 4.257 5 C -0.059 4.059 6 C -0.215 4.215 7 C 0.098 3.902 8 C -0.210 4.210 9 C -0.095 4.095 10 C 0.033 3.967 11 H 0.087 0.913 12 N -0.355 5.355 13 C 0.168 3.832 14 C -0.381 4.381 15 C 0.120 3.880 16 C -0.519 4.519 17 H 0.094 0.906 18 C -0.177 4.177 19 N -0.434 5.434 20 Si 0.806 3.194 21 H -0.183 1.183 22 H -0.184 1.184 23 H -0.187 1.187 24 C -0.294 4.294 25 C -0.032 4.032 26 N -0.354 5.354 27 C -0.024 4.024 28 O -0.234 6.234 29 H 0.133 0.867 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.177 0.823 33 H 0.184 0.816 34 H 0.158 0.842 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.239 0.761 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.164 0.836 42 H 0.098 0.902 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.080 4.666 -6.308 21.558 hybrid contribution 0.774 0.419 0.992 1.326 sum -19.306 5.084 -5.316 20.660 Atomic orbital electron populations 1.23383 0.76096 1.05547 1.02603 1.86052 1.23694 1.26618 1.88118 1.18696 0.90492 0.85452 0.94558 1.21439 1.01380 0.91418 1.11462 1.21082 0.92700 0.98539 0.93560 1.20795 0.94212 0.96684 1.09823 1.18841 0.82530 0.93443 0.95387 1.19037 0.92456 0.94118 1.15422 1.20340 0.91095 0.94904 1.03150 1.21209 0.90371 0.85645 0.99518 0.91326 1.43933 1.22097 1.27463 1.42038 1.18100 0.86613 0.89697 0.88741 1.21229 1.05113 1.04988 1.06771 1.17989 0.89967 0.90729 0.89271 1.19883 0.94269 1.19947 1.17778 0.90618 1.26840 0.95702 0.94197 1.00995 1.69841 1.03032 1.34812 1.35692 0.85108 0.79001 0.78603 0.76705 1.18304 1.18434 1.18718 1.21780 1.04420 0.98055 1.05101 1.21760 0.91399 0.97854 0.92180 1.66880 1.10176 1.22906 1.35483 1.23481 0.95094 0.84269 0.99565 1.86042 1.15198 1.38327 1.83804 0.86661 0.91104 0.91465 0.82316 0.81595 0.84215 0.89177 0.89779 0.76115 0.88335 0.89644 0.86869 0.83625 0.90234 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.99 9.64 -92.39 -0.89 -7.88 16 3 C 0.15 3.56 6.65 22.54 0.15 3.71 16 4 C -0.24 -4.19 9.03 22.35 0.20 -3.98 16 5 C -0.04 -0.70 10.03 22.20 0.22 -0.48 16 6 C -0.20 -4.53 9.93 22.44 0.22 -4.31 16 7 C 0.14 4.12 6.47 22.51 0.15 4.27 16 8 C -0.21 -5.72 5.76 -19.66 -0.11 -5.84 16 9 C -0.06 -1.60 4.97 29.89 0.15 -1.45 16 10 C 0.14 4.68 2.34 45.15 0.11 4.79 16 11 H 0.07 2.65 6.50 -2.38 -0.02 2.64 16 12 N -0.72 -26.78 5.27 -323.95 -1.71 -28.48 16 13 C 0.40 18.93 7.64 132.90 1.01 19.94 16 14 C -0.35 -18.32 8.67 23.01 0.20 -18.12 16 15 C 0.13 7.20 5.61 -21.12 -0.12 7.08 16 16 C -0.49 -26.85 9.12 23.52 0.21 -26.63 16 17 H 0.08 4.06 7.90 -2.91 -0.02 4.04 16 18 C 0.04 2.03 5.19 85.29 0.44 2.47 16 19 N -0.81 -41.85 10.90 21.84 0.24 -41.61 16 20 Si 0.99 37.90 29.59 68.60 2.03 39.93 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 23 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 24 C -0.27 -14.56 8.75 22.60 0.20 -14.36 16 25 C 0.12 5.81 11.10 84.26 0.94 6.74 16 26 N -0.63 -30.87 10.37 -194.48 -2.02 -32.89 16 27 C 0.05 1.72 6.54 72.12 0.47 2.19 16 28 O -0.32 -10.52 10.27 -91.85 -0.94 -11.47 16 29 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.58 7.65 -2.39 -0.02 0.56 16 31 H 0.07 0.60 7.65 -2.39 -0.02 0.59 16 32 H 0.16 1.73 6.28 -2.91 -0.02 1.71 16 33 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.09 2.27 8.10 -2.39 -0.02 2.25 16 36 H 0.08 2.40 7.83 -2.39 -0.02 2.38 16 37 H 0.40 13.42 8.70 -92.71 -0.81 12.62 16 38 H 0.10 4.96 6.21 -2.91 -0.02 4.94 16 39 H 0.29 13.47 8.29 -92.71 -0.77 12.70 16 40 H 0.11 6.25 6.16 -2.91 -0.02 6.23 16 41 H 0.15 6.21 8.06 -2.91 -0.02 6.18 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.10 3.53 7.81 -2.38 -0.02 3.51 16 Total: -1.00 -66.50 354.53 2.52 -63.98 By element: Atomic # 1 Polarization: 40.85 SS G_CDS: 0.25 Total: 41.10 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 5.55 Total: -22.67 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -3.49 Total: -102.99 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -1.83 Total: -19.35 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Total: -66.50 2.52 -63.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160133619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.723 kcal (2) G-P(sol) polarization free energy of solvation -66.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds