Wall clock time and date at job start Tue Mar 31 2020 14:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 116.99307 * 2 1 4 4 C 1.38653 * 119.90609 * 359.97438 * 3 2 1 5 5 C 1.38154 * 119.92106 * 180.02562 * 4 3 2 6 6 C 1.38040 * 120.01870 * 0.07190 * 5 4 3 7 7 C 1.39159 * 120.33386 * 359.96295 * 6 5 4 8 8 C 1.38315 * 119.72671 * 359.88479 * 7 6 5 9 9 C 1.50756 * 121.43045 * 180.45043 * 8 7 6 10 10 C 1.53077 * 109.68004 * 342.17402 * 9 8 7 11 11 H 1.09001 * 109.73292 * 288.46665 * 10 9 8 12 12 N 1.46508 * 109.70065 * 167.88773 * 10 9 8 13 13 C 1.39077 * 120.00136 * 156.16605 * 12 10 9 14 14 C 1.38752 * 119.65587 * 0.02562 * 13 12 10 15 15 C 1.40767 * 118.66746 * 179.71913 * 14 13 12 16 16 C 1.41550 * 120.99536 * 180.29917 * 15 14 13 17 17 H 1.08006 * 119.99842 * 23.19285 * 16 15 14 18 18 C 1.40027 * 120.00345 * 203.19847 * 16 15 14 19 19 N 1.30742 * 119.99942 * 17.26545 * 18 16 15 20 20 Si 1.86805 * 119.99875 * 197.26658 * 18 16 15 21 21 H 1.48507 * 109.46683 * 89.99995 * 20 18 16 22 22 H 1.48503 * 109.46884 * 209.99464 * 20 18 16 23 23 H 1.48497 * 109.47436 * 329.99716 * 20 18 16 24 24 C 1.41193 * 118.01465 * 0.28392 * 15 14 13 25 25 C 1.36551 * 119.14367 * 359.97438 * 24 15 14 26 26 N 1.32093 * 121.27467 * 0.02562 * 25 24 15 27 27 C 1.53404 * 108.28605 * 48.19091 * 10 9 8 28 28 O 1.35844 * 118.48421 * 179.83398 * 7 6 5 29 29 H 1.08995 * 109.47505 * 299.99918 * 1 2 3 30 30 H 1.09003 * 109.46948 * 60.00693 * 1 2 3 31 31 H 1.09002 * 109.46639 * 179.97438 * 1 2 3 32 32 H 1.08005 * 120.03717 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.98851 * 180.02562 * 5 4 3 34 34 H 1.07996 * 119.82938 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.44644 * 222.10048 * 9 8 7 36 36 H 1.09005 * 109.42561 * 102.23263 * 9 8 7 37 37 H 0.96998 * 119.99790 * 336.17615 * 12 10 9 38 38 H 1.07996 * 120.66192 * 0.02562 * 14 13 12 39 39 H 0.97000 * 119.99924 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.42766 * 179.97438 * 24 15 14 41 41 H 1.08003 * 119.36225 * 180.02562 * 25 24 15 42 42 H 1.08993 * 109.68542 * 55.02570 * 27 10 9 43 43 H 1.09011 * 109.68269 * 175.57873 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2887 2.3725 -0.0005 5 6 1.9154 3.6037 -0.0011 6 6 3.2938 3.6769 -0.0026 7 6 4.0594 2.5148 -0.0028 8 6 3.4336 1.2813 0.0009 9 6 4.2251 -0.0017 0.0110 10 6 5.6655 0.2777 -0.4256 11 1 5.6903 0.4986 -1.4927 12 7 6.5026 -0.8912 -0.1437 13 6 7.6761 -1.0955 -0.8615 14 6 8.0476 -0.1875 -1.8427 15 6 9.2425 -0.4113 -2.5524 16 6 9.6716 0.4866 -3.5590 17 1 9.3266 1.5101 -3.5525 18 6 10.5434 0.0481 -4.5632 19 7 10.6976 -1.2317 -4.7820 20 14 11.4861 1.2915 -5.5903 21 1 12.7860 1.5892 -4.9368 22 1 11.7293 0.7323 -6.9443 23 1 10.6924 2.5413 -5.7060 24 6 10.0005 -1.5581 -2.2300 25 6 9.5516 -2.3985 -1.2518 26 7 8.4251 -2.1583 -0.6051 27 6 6.1822 1.4865 0.3651 28 8 5.4129 2.6306 -0.0077 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2102 2.3147 -0.0014 33 1 1.3267 4.5091 -0.0011 34 1 3.7806 4.6409 -0.0034 35 1 3.7696 -0.7145 -0.6763 36 1 4.2258 -0.4194 1.0178 37 1 6.2382 -1.5227 0.5434 38 1 7.4349 0.6764 -2.0541 39 1 11.3018 -1.5355 -5.4774 40 1 10.9233 -1.7679 -2.7503 41 1 10.1288 -3.2765 -1.0020 42 1 6.0707 1.3013 1.4334 43 1 7.2326 1.6577 0.1294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160133620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:00 Heat of formation + Delta-G solvation = -16.212713 kcal Electronic energy + Delta-G solvation = -26878.196193 eV Core-core repulsion = 23081.544343 eV Total energy + Delta-G solvation = -3796.651850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.99224 -39.32428 -38.41128 -36.69789 -35.65017 -34.03337 -32.53727 -30.67962 -30.11549 -29.50519 -27.59190 -27.24996 -25.98228 -25.59391 -23.39951 -22.19587 -21.51303 -20.86085 -19.74533 -18.50452 -17.75686 -17.15533 -16.39335 -16.03405 -16.01536 -15.66929 -15.32383 -15.03707 -14.88344 -14.56583 -14.03979 -13.96628 -13.60328 -13.34958 -13.23539 -12.97392 -12.71792 -12.56183 -12.44139 -12.27150 -11.96252 -11.75037 -11.43393 -11.25276 -11.20226 -11.02740 -10.90374 -10.65455 -10.53079 -10.26439 -9.80115 -9.42555 -9.04181 -8.42031 -8.14654 -7.97945 -7.91937 -6.84545 -6.52405 -4.56054 1.21421 1.33865 2.79601 3.00294 3.02759 3.05719 3.08597 3.30857 3.34728 3.60839 3.87971 3.97900 4.61029 4.64186 4.70286 4.77111 4.89967 4.91934 5.00721 5.06313 5.20091 5.28472 5.30731 5.38759 5.46331 5.60251 5.79255 5.82913 6.00446 6.10945 6.16057 6.16949 6.22527 6.31197 6.50008 6.72748 6.88380 6.93130 6.99928 7.15580 7.26235 7.45764 7.54297 7.82104 8.01748 8.05836 8.42766 8.67506 8.83152 8.88544 9.74983 10.10580 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.003006 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.607273 B = 9313.953958 C =10202.384398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.162 3.838 4 C -0.246 4.246 5 C -0.051 4.051 6 C -0.186 4.186 7 C 0.173 3.827 8 C -0.187 4.187 9 C -0.071 4.071 10 C 0.135 3.865 11 H 0.094 0.906 12 N -0.733 5.733 13 C 0.396 3.604 14 C -0.337 4.337 15 C 0.156 3.844 16 C -0.455 4.455 17 H 0.080 0.920 18 C 0.079 3.921 19 N -0.783 5.783 20 Si 0.910 3.090 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.244 4.244 25 C 0.115 3.885 26 N -0.622 5.622 27 C 0.045 3.955 28 O -0.306 6.306 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.392 0.608 38 H 0.099 0.901 39 H 0.282 0.718 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.064 0.936 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.354 6.139 7.829 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.116 3.884 4 C -0.265 4.265 5 C -0.069 4.069 6 C -0.205 4.205 7 C 0.127 3.873 8 C -0.189 4.189 9 C -0.109 4.109 10 C 0.027 3.973 11 H 0.112 0.888 12 N -0.370 5.370 13 C 0.165 3.835 14 C -0.364 4.364 15 C 0.148 3.852 16 C -0.486 4.486 17 H 0.098 0.902 18 C -0.141 4.141 19 N -0.408 5.408 20 Si 0.735 3.265 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.268 4.268 25 C -0.034 4.034 26 N -0.346 5.346 27 C -0.032 4.032 28 O -0.218 6.218 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.226 0.774 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.318 5.477 8.168 19.053 hybrid contribution 0.312 0.711 -0.962 1.236 sum -16.006 6.188 7.206 18.612 Atomic orbital electron populations 1.23061 0.78381 1.03917 1.01337 1.86080 1.21296 1.26834 1.88278 1.18570 0.90894 0.84277 0.94655 1.21037 0.99844 0.92200 1.13388 1.20640 0.93467 0.97077 0.95693 1.20508 0.93159 0.97037 1.09790 1.18504 0.83226 0.92200 0.93414 1.18987 0.91381 0.94684 1.13822 1.20498 0.93143 0.94415 1.02836 1.21217 0.89117 0.86182 1.00748 0.88790 1.43952 1.23401 1.26762 1.42890 1.17915 0.85801 0.90647 0.89097 1.21170 1.02122 1.05143 1.07916 1.17592 0.88070 0.90655 0.88905 1.19620 1.23548 0.98001 1.07456 0.90155 1.25972 0.95185 0.95707 0.97202 1.69805 1.28817 1.15311 1.26825 0.86276 0.80358 0.81290 0.78625 1.19126 1.20221 1.18458 1.21811 1.03418 0.99446 1.02130 1.21352 0.91581 0.97442 0.92998 1.66728 1.10329 1.22588 1.34928 1.23719 0.96132 0.84424 0.98934 1.86074 1.13967 1.38648 1.83068 0.92657 0.92586 0.88255 0.85466 0.85260 0.85033 0.89292 0.90360 0.77353 0.88320 0.90687 0.85860 0.86405 0.91755 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.63 9.64 -19.43 -0.19 -3.82 16 3 C 0.16 2.02 6.65 -39.16 -0.26 1.76 16 4 C -0.25 -2.57 9.03 -39.46 -0.36 -2.92 16 5 C -0.05 -0.51 10.03 -39.69 -0.40 -0.91 16 6 C -0.19 -2.25 9.93 -39.31 -0.39 -2.64 16 7 C 0.17 2.47 6.47 -39.21 -0.25 2.22 16 8 C -0.19 -2.61 5.76 -104.30 -0.60 -3.21 16 9 C -0.07 -1.00 4.96 -27.82 -0.14 -1.14 16 10 C 0.14 2.19 2.35 -67.68 -0.16 2.03 16 11 H 0.09 1.73 6.50 -51.93 -0.34 1.40 16 12 N -0.73 -13.46 5.27 -53.74 -0.28 -13.74 16 13 C 0.40 9.13 7.64 -154.98 -1.18 7.95 16 14 C -0.34 -8.32 8.67 -38.44 -0.33 -8.65 16 15 C 0.16 4.18 5.61 -106.56 -0.60 3.59 16 16 C -0.46 -12.04 9.12 -37.65 -0.34 -12.38 16 17 H 0.08 2.05 7.90 -52.48 -0.41 1.64 16 18 C 0.08 1.97 5.20 -17.34 -0.09 1.87 16 19 N -0.78 -19.97 10.90 55.55 0.61 -19.36 16 20 Si 0.91 18.42 29.59 -169.99 -5.03 13.39 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 24 C -0.24 -6.38 8.75 -39.07 -0.34 -6.72 16 25 C 0.12 2.81 11.10 -18.05 -0.20 2.61 16 26 N -0.62 -15.12 10.37 -12.82 -0.13 -15.26 16 27 C 0.04 0.68 6.54 37.37 0.24 0.93 16 28 O -0.31 -4.76 10.27 -19.25 -0.20 -4.96 16 29 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 30 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.13 1.00 6.28 -52.48 -0.33 0.67 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.09 1.29 7.84 -51.93 -0.41 0.88 16 36 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 37 H 0.39 6.61 8.69 -40.82 -0.35 6.25 16 38 H 0.10 2.33 6.21 -52.49 -0.33 2.00 16 39 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 40 H 0.12 3.28 6.16 -52.49 -0.32 2.96 16 41 H 0.12 2.53 8.06 -52.48 -0.42 2.11 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.12 1.96 7.81 -51.92 -0.41 1.56 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -29.80 354.52 -9.66 -39.46 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -5.36 Total: 13.37 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -4.41 Total: -14.42 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.19 Total: -48.36 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.39 Total: -8.77 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.80 -9.66 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160133620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.243 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds